Works matching IS 03051048 AND DT 2013 AND VI 41 AND IP 15

Results: 44

Cooperativity and interaction energy threshold effects in recognition of the −10 promoter element by bacterial RNA polymerase.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 15, p. 7276, doi. 10.1093/nar/gkt541

By:

Mekler, Vladimir;
Severinov, Konstantin

Publication type:

Article

Mapping the driving forces of chromosome structure and segregation in Escherichia coli.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 15, p. 7370, doi. 10.1093/nar/gkt468

By:

Kuwada, Nathan J.;
Cheveralls, Keith C.;
Traxler, Beth;
Wiggins, Paul A.

Publication type:

Article

The genetic code constrains yet facilitates Darwinian evolution.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 15, p. 7420, doi. 10.1093/nar/gkt536

By:

Firnberg, Elad;
Ostermeier, Marc

Publication type:

Article

Co-expression of RNA–protein complexes in Escherichia coli and applications to RNA biology.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 15, p. e150, doi. 10.1093/nar/gkt576

By:

Ponchon, Luc;
Catala, Marjorie;
Seijo, Bili;
El Khouri, Marguerite;
Dardel, Frédéric;
Nonin-Lecomte, Sylvie;
Tisné, Carine

Publication type:

Article

Nucleic Acids Research - Editorial Board.

Published in:: Nucleic Acids Research, 2013, v. 41, n. 15, p. ii, doi. 10.1093/nar/gks1396
Publication type:: Article

DNA topoisomerase IIα controls replication origin cluster licensing and firing time in Xenopus egg extracts.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 15, p. 7313, doi. 10.1093/nar/gkt494

By:

Gaggioli, Vincent;
Le Viet, Barbara;
Germe, Thomas;
Hyrien, Olivier

Publication type:

Article

DNA damage-induced inhibition of rRNA synthesis by DNA-PK and PARP-1.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 15, p. 7378, doi. 10.1093/nar/gkt502

By:

Calkins, Anne S.;
Iglehart, J. Dirk;
Lazaro, Jean-Bernard

Publication type:

Article

Mapping the LINE1 ORF1 protein interactome reveals associated inhibitors of human retrotransposition.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 15, p. 7401, doi. 10.1093/nar/gkt512

By:

Goodier, John L.;
Cheung, Ling E.;
Kazazian, Haig H.

Publication type:

Article

Visualization of multivalent histone modification in a single cell reveals highly concerted epigenetic changes on differentiation of embryonic stem cells.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 15, p. 7231, doi. 10.1093/nar/gkt528

By:

Hattori, Naoko;
Niwa, Tohru;
Kimura, Kana;
Helin, Kristian;
Ushijima, Toshikazu

Publication type:

Article

Recognition of O6-benzyl-2′-deoxyguanosine by a perimidinone-derived synthetic nucleoside: a DNA interstrand stacking interaction.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 15, p. 7566, doi. 10.1093/nar/gkt488

By:

Kowal, Ewa A.;
Lad, Rahul R.;
Pallan, Pradeep S.;
Dhummakupt, Elizabeth;
Wawrzak, Zdzislaw;
Egli, Martin;
Sturla, Shana J.;
Stone, Michael P.

Publication type:

Article

Binding of RNA by APOBEC3G controls deamination-independent restriction of retroviruses.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 15, p. 7438

By:

Bélanger, Kasandra;
Savoie, Mathieu;
Rosales Gerpe, María Carla;
Couture, Jean-François;
Langlois, Marc-André

Publication type:

Article

Computational prediction of the localization of microRNAs within their pre-miRNA.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 15, p. 7200, doi. 10.1093/nar/gkt466

By:

Leclercq, Mickael;
Diallo, Abdoulaye Banire;
Blanchette, Mathieu

Publication type:

Article

Two RNA-binding motifs in eIF3 direct HCV IRES-dependent translation.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 15, p. 7512, doi. 10.1093/nar/gkt510

By:

Sun, Chaomin;
Querol-Audí, Jordi;
Mortimer, Stefanie A.;
Arias-Palomo, Ernesto;
Doudna, Jennifer A.;
Nogales, Eva;
Cate, Jamie H. D.

Publication type:

Article

A modular strategy for engineering orthogonal chimeric RNA transcription regulators.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 15, p. 7577, doi. 10.1093/nar/gkt452

By:

Takahashi, Melissa K.;
Lucks, Julius B.

Publication type:

Article

Distance-dependent duplex DNA destabilization proximal to G-quadruplex/i-motif sequences.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 15, p. 7453, doi. 10.1093/nar/gkt476

By:

König, Sebastian L. B.;
Huppert, Julian L.;
Sigel, Roland K. O.;
Evans, Amanda C.

Publication type:

Article

A super-family of transcriptional activators regulates bacteriophage packaging and lysis in Gram-positive bacteria.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 15, p. 7260, doi. 10.1093/nar/gkt508

By:

Quiles-Puchalt, Nuria;
Tormo-Más, María Ángeles;
Campoy, Susana;
Toledo-Arana, Alejandro;
Monedero, Vicente;
Lasa, Íñigo;
Novick, Richard P.;
Christie, Gail E.;
Penadés, José R.

Publication type:

Article

Inhibition of DNA damage repair by artificial activation of PARP with siDNA.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 15, p. 7344, doi. 10.1093/nar/gkt522

By:

Croset, Amelie;
Cordelières, Fabrice P.;
Berthault, Nathalie;
Buhler, Cyril;
Sun, Jian-Sheng;
Quanz, Maria;
Dutreix, Marie

Publication type:

Article

The Genome of Anopheles darlingi, the main neotropical malaria vector.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 15, p. 7387, doi. 10.1093/nar/gkt484

By:

Marinotti, Osvaldo;
Cerqueira, Gustavo C.;
de Almeida, Luiz Gonzaga Paula;
Ferro, Maria Inês Tiraboschi;
Loreto, Elgion Lucio da Silva;
Zaha, Arnaldo;
Teixeira, Santuza M. R.;
Wespiser, Adam R.;
Almeida e Silva, Alexandre;
Schlindwein, Aline Daiane;
Pacheco, Ana Carolina Landim;
Silva, Artur Luiz da Costa da;
Graveley, Brenton R.;
Walenz, Brian P.;
Lima, Bruna de Araujo;
Ribeiro, Carlos Alexandre Gomes;
Nunes-Silva, Carlos Gustavo;
de Carvalho, Carlos Roberto;
Soares, Célia Maria de Almeida;
de Menezes, Claudia Beatriz Afonso

Publication type:

Article

A probabilistic approach to learn chromatin architecture and accurate inference of the NF-κB/RelA regulatory network using ChIP-Seq.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 15, p. 7240, doi. 10.1093/nar/gkt493

By:

Yang, Jun;
Mitra, Abhishek;
Dojer, Norbert;
Fu, Shuhua;
Rowicka, Maga;
Brasier, Allan R.

Publication type:

Article

DNA-damage tolerance mediated by PCNA&bullet;Ub fusions in human cells is dependent on Rev1 but not Polη.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 15, p. 7356, doi. 10.1093/nar/gkt542

By:

Qin, Zhoushuai;
Lu, Mengxue;
Xu, Xin;
Hanna, Michelle;
Shiomi, Naoko;
Xiao, Wei

Publication type:

Article

Nucleic Acids Research.

Published in:: Nucleic Acids Research, 2013, v. 41, n. 15, p. i, doi. 10.1093/nar/gks1366
Publication type:: Article

Diverse stresses dramatically alter genome-wide p53 binding and transactivation landscape in human cancer cells.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 15, p. 7286, doi. 10.1093/nar/gkt504

By:

Menendez, Daniel;
Nguyen, Thuy-Ai;
Freudenberg, Johannes M.;
Mathew, Viju J.;
Anderson, Carl W.;
Jothi, Raja;
Resnick, Michael A.

Publication type:

Article

Secondary structure and domain architecture of the 23S and 5S rRNAs.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 15, p. 7522, doi. 10.1093/nar/gkt513

By:

Petrov, Anton S.;
Bernier, Chad R.;
Hershkovits, Eli;
Xue, Yuzhen;
Waterbury, Chris C.;
Hsiao, Chiaolong;
Stepanov, Victor G.;
Gaucher, Eric A.;
Grover, Martha A.;
Harvey, Stephen C.;
Hud, Nicholas V.;
Wartell, Roger M.;
Fox, George E.;
Williams, Loren Dean

Publication type:

Article

DNA phosphate crowding correlates with protein cationic side chain density and helical curvature in protein/DNA crystal structures.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 15, p. 7547, doi. 10.1093/nar/gkt492

By:

Grant, Bryce N.;
Dourlain, Elizabeth M.;
Araneda, Jayme N.;
Throneberry, Madison L.;
McFail-Isom, Lori A.

Publication type:

Article

Structure-function analysis of the 5′ end of yeast U1 snRNA highlights genetic interactions with the Msl5&bullet;Mud2 branchpoint-binding complex and other spliceosome assembly factors.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 15, p. 7485, doi. 10.1093/nar/gkt490

By:

Schwer, Beate;
Chang, Jonathan;
Shuman, Stewart

Publication type:

Article

Programmable repression and activation of bacterial gene expression using an engineered CRISPR-Cas system.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 15, p. 7429, doi. 10.1093/nar/gkt520

By:

Bikard, David;
Jiang, Wenyan;
Samai, Poulami;
Hochschild, Ann;
Zhang, Feng;
Marraffini, Luciano A.

Publication type:

Article

Impact of target site distribution for Type I restriction enzymes on the evolution of methicillin-resistant Staphylococcus aureus (MRSA) populations.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 15, p. 7472, doi. 10.1093/nar/gkt535

By:

Roberts, Gareth A.;
Houston, Patrick J.;
White, John H.;
Chen, Kai;
Stephanou, Augoustinos S.;
Cooper, Laurie P.;
Dryden, David T.F.;
Lindsay, Jodi A.

Publication type:

Article

Initiating nucleotide identity determines efficiency of RNA synthesis from 6S RNA templates in Bacillus subtilis but not Escherichia coli.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 15, p. 7501, doi. 10.1093/nar/gkt517

By:

Cabrera-Ostertag, Ignacio J.;
Cavanagh, Amy T.;
Wassarman, Karen M.

Publication type:

Article

Genome-wide survey of DNA-binding proteins in Arabidopsis thaliana: analysis of distribution and functions.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 15, p. 7212, doi. 10.1093/nar/gkt505

By:

Malhotra, Sony;
Sowdhamini, Ramanathan

Publication type:

Article

Conserved arginines on the rim of Hfq catalyze base pair formation and exchange.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 15, p. 7536, doi. 10.1093/nar/gkt521

By:

Panja, Subrata;
Schu, Daniel J.;
Woodson, Sarah A.

Publication type:

Article

miRspring: a compact standalone research tool for analyzing miRNA-seq data.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 15, p. e147, doi. 10.1093/nar/gkt485

By:

Humphreys, David T.;
Suter, Catherine M.

Publication type:

Article

Quantitative assessment of ratiometric bimolecular beacons as a tool for imaging single engineered RNA transcripts and measuring gene expression in living cells.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 15, p. e152, doi. 10.1093/nar/gkt561

By:

Zhang, Xuemei;
Song, Yang;
Shah, Akash Y.;
Lekova, Virzhiniya;
Raj, Arjun;
Huang, Ling;
Behlke, Mark A.;
Tsourkas, Andrew

Publication type:

Article

Subscriptions.

Published in:: Nucleic Acids Research, 2013, v. 41, n. 15, p. iii, doi. 10.1093/nar/gks1420
Publication type:: Article

Rapid oligonucleotide-templated fluorogenic tetrazine ligations.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 15, p. e148

By:

Šečkutė, Jolita;
Yang, Jun;
Devaraj, Neal K.

Publication type:

Article

ATP-dependent nucleosome unwrapping catalyzed by human RAD51.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 15, p. 7302, doi. 10.1093/nar/gkt411

By:

North, Justin A.;
Amunugama, Ravindra;
Klajner, Marcelina;
Bruns, Aaron N.;
Poirier, Michael G.;
Fishel, Richard

Publication type:

Article

Integrated analysis of microRNA and mRNA expression: adding biological significance to microRNA target predictions.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 15, p. e146, doi. 10.1093/nar/gkt525

By:

van Iterson, Maarten;
Bervoets, Sander;
de Meijer, Emile J.;
Buermans, Henk P.;
’t Hoen, Peter A. C.;
Menezes, Renée X.;
Boer, Judith M.

Publication type:

Article

Epistatic role of base excision repair and mismatch repair pathways in mediating cisplatin cytotoxicity.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 15, p. 7332, doi. 10.1093/nar/gkt479

By:

Kothandapani, Anbarasi;
Sawant, Akshada;
Dangeti, Venkata Srinivas Mohan Nimai;
Sobol, Robert W.;
Patrick, Steve M.

Publication type:

Article

Computational methods to detect conserved non-genic elements in phylogenetically isolated genomes: application to zebrafish.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 15, p. e151, doi. 10.1093/nar/gkt557

By:

Hiller, Michael;
Agarwal, Saatvik;
Notwell, James H.;
Parikh, Ravi;
Guturu, Harendra;
Wenger, Aaron M.;
Bejerano, Gill

Publication type:

Article

SECISearch3 and Seblastian: new tools for prediction of SECIS elements and selenoproteins.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 15, p. e149, doi. 10.1093/nar/gkt550

By:

Mariotti, Marco;
Lobanov, Alexei V.;
Guigo, Roderic;
Gladyshev, Vadim N.

Publication type:

Article

Carboxyl terminal domain basic amino acids of mycobacterial topoisomerase I bind DNA to promote strand passage.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 15, p. 7462, doi. 10.1093/nar/gkt506

By:

Ahmed, Wareed;
Bhat, Anuradha Gopal;
Leelaram, Majety Naga;
Menon, Shruti;
Nagaraja, Valakunja

Publication type:

Article

Recognition and processing of double-stranded DNA by ExoX, a distributive 3′–5′ exonuclease.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 15, p. 7556, doi. 10.1093/nar/gkt495

By:

Wang, Tianyu;
Sun, Han-Li;
Cheng, Fang;
Zhang, Xian-En;
Bi, Lijun;
Jiang, Tao

Publication type:

Article

Whole-body scanning PCR; a highly sensitive method to study the biodistribution of mRNAs, noncoding RNAs and therapeutic oligonucleotides.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 15, p. e145, doi. 10.1093/nar/gkt515

By:

Boos, Julien A.;
Kirk, David W.;
Piccolotto, Mari-Luz;
Zuercher, Werner;
Gfeller, Sandro;
Neuner, Philippe;
Dattler, Andre;
Wishart, William L.;
Von Arx, Fabian;
Beverly, Michael;
Christensen, Jesper;
Litherland, Karine;
van de Kerkhof, Esther;
Swart, Pieter J.;
Faller, Thomas;
Beyerbach, Armin;
Morrissey, David;
Hunziker, Juerg;
Beuvink, Iwan

Publication type:

Article

Chromatin and epigenetic features of long-range gene regulation.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 15, p. 7185, doi. 10.1093/nar/gkt499

By:

Harmston, Nathan;
Lenhard, Boris

Publication type:

Article

Unravelling the hidden DNA structural/physical code provides novel insights on promoter location.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 15, p. 7220, doi. 10.1093/nar/gkt511

By:

Durán, Elisa;
Djebali, Sarah;
González, Santi;
Flores, Oscar;
Mercader, Josep Maria;
Guigó, Roderic;
Torrents, David;
Soler-López, Montserrat;
Orozco, Modesto

Publication type:

Article