Works matching IS 03051048 AND DT 2013 AND VI 41 AND IP 14

Results: 45

Modelling of crowded polymers elucidate effects of double-strand breaks in topological domains of bacterial chromosomes.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 14, p. 6808, doi. 10.1093/nar/gkt480

By:

Dorier, Julien;
Stasiak, Andrzej

Publication type:

Article

Genome-wide quantitative assessment of variation in DNA methylation patterns.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 14, p. 7184, doi. 10.1093/nar/gkt209

By:

Xie, H.;
Wang, M.;
de Andrade, A.;
Bonaldo, Mde F.;
Galat, V.;
Arndt, K.;
Rajaram, V.;
Goldman, S.;
Tomita, T.;
Soares, M. B.

Publication type:

Article

Strong bending of the DNA double helix.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 14, p. 6785, doi. 10.1093/nar/gkt396

By:

Vologodskii, Alexander;
D. Frank-Kamenetskii, Maxim

Publication type:

Article

Investigation of DNA sequence recognition by a streptomycete MarR family transcriptional regulator through surface plasmon resonance and X-ray crystallography.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 14, p. 7009, doi. 10.1093/nar/gkt523

By:

Stevenson, Clare E. M.;
Assaad, Aoun;
Chandra, Govind;
Le, Tung B. K.;
Greive, Sandra J.;
Bibb, Mervyn J.;
Lawson, David M.

Publication type:

Article

CARM1 automethylation is controlled at the level of alternative splicing.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 14, p. 6870, doi. 10.1093/nar/gkt415

By:

Wang, Lu;
Charoensuksai, Purin;
Watson, Nikole J.;
Wang, Xing;
Zhao, Zibo;
Coriano, Carlos G.;
Kerr, Leslie R.;
Xu, Wei

Publication type:

Article

Conserved regions of ribonucleoprotein ribonuclease MRP are involved in interactions with its substrate.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 14, p. 7084, doi. 10.1093/nar/gkt432

By:

Esakova, Olga;
Perederina, Anna;
Berezin, Igor;
Krasilnikov, Andrey S.

Publication type:

Article

Nucleic Acids Research.

Published in:: Nucleic Acids Research, 2013, v. 41, n. 14, p. i, doi. 10.1093/nar/gks1366
Publication type:: Article

Prediction of clustered RNA-binding protein motif sites in the mammalian genome.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 14, p. 6793, doi. 10.1093/nar/gkt421

By:

Zhang, Chaolin;
Lee, Kuang-Yung;
Swanson, Maurice S.;
Darnell, Robert B.

Publication type:

Article

Structural and torsional properties of the RAD51-dsDNA nucleoprotein filament.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 14, p. 7023, doi. 10.1093/nar/gkt425

By:

Lee, Mina;
Lipfert, Jan;
Sanchez, Humberto;
Wyman, Claire;
Dekker, Nynke H.

Publication type:

Article

UV-triggered p21 degradation facilitates damaged-DNA replication and preserves genomic stability.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 14, p. 6942, doi. 10.1093/nar/gkt475

By:

Mansilla, Sabrina F.;
Soria, Gastón;
Vallerga, María Belén;
Habif, Martín;
Martínez-López, Wilner;
Prives, Carol;
Gottifredi, Vanesa

Publication type:

Article

UGA codon position-dependent incorporation of selenocysteine into mammalian selenoproteins.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 14, p. 6952, doi. 10.1093/nar/gkt409

By:

Turanov, Anton A.;
Lobanov, Alexei V.;
Hatfield, Dolph L.;
Gladyshev, Vadim N.

Publication type:

Article

Enhancer networks revealed by correlated DNAse hypersensitivity states of enhancers.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 14, p. 6828, doi. 10.1093/nar/gkt374

By:

Malin, Justin;
Aniba, Mohamed Radhouane;
Hannenhalli, Sridhar

Publication type:

Article

Expression of a large LINE-1-driven antisense RNA is linked to epigenetic silencing of the metastasis suppressor gene TFPI-2 in cancer.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 14, p. 6857, doi. 10.1093/nar/gkt438

By:

Cruickshanks, Hazel A.;
Vafadar-Isfahani, Natasha;
Dunican, Donncha S.;
Lee, Andy;
Sproul, Duncan;
Lund, Jonathan N.;
Meehan, Richard R.;
Tufarelli, Cristina

Publication type:

Article

Subscriptions.

Published in:: Nucleic Acids Research, 2013, v. 41, n. 14, p. iii, doi. 10.1093/nar/gks1419
Publication type:: Article

Nucleic Acids Research - Editorial Board.

Published in:: Nucleic Acids Research, 2013, v. 41, n. 14, p. ii, doi. 10.1093/nar/gks1395
Publication type:: Article

Structure-function analysis of the EF-hand protein centrin-2 for its intracellular localization and nucleotide excision repair.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 14, p. 6917, doi. 10.1093/nar/gkt434

By:

Nishi, Ryotaro;
Sakai, Wataru;
Tone, Daisuke;
Hanaoka, Fumio;
Sugasawa, Kaoru

Publication type:

Article

Splicing-coupled 3′ end formation requires a terminal splice acceptor site, but not intron excision.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 14, p. 7101, doi. 10.1093/nar/gkt446

By:

Davidson, Lee;
West, Steven

Publication type:

Article

Identifying the targets of aminoacyl-tRNA synthetase inhibitors by primer extension inhibition.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 14, p. e144, doi. 10.1093/nar/gkt526

By:

Orelle, Cédric;
Szal, Teresa;
Klepacki, Dorota;
Shaw, Karen J.;
Vázquez-Laslop, Nora;
Mankin, Alexander S.

Publication type:

Article

CoRAL: predicting non-coding RNAs from small RNA-sequencing data.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 14, p. e137, doi. 10.1093/nar/gkt426

By:

Leung, Yuk Yee;
Ryvkin, Paul;
Ungar, Lyle H.;
Gregory, Brian D.;
Wang, Li-San

Publication type:

Article

Transcriptional cross talk between orphan nuclear receptor ERRγ and transmembrane transcription factor ATF6α coordinates endoplasmic reticulum stress response.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 14, p. 6960, doi. 10.1093/nar/gkt429

By:

Misra, Jagannath;
Kim, Don-Kyu;
Choi, Woogyun;
Koo, Seung-Hoi;
Lee, Chul-Ho;
Back, Sung-Hoon;
Kaufman, Randal J.;
Choi, Hueng-Sik

Publication type:

Article

A novel interplay between the Fanconi anemia core complex and ATR-ATRIP kinase during DNA cross-link repair.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 14, p. 6930, doi. 10.1093/nar/gkt467

By:

Tomida, Junya;
Itaya, Akiko;
Shigechi, Tomoko;
Unno, Junya;
Uchida, Emi;
Ikura, Masae;
Masuda, Yuji;
Matsuda, Shun;
Adachi, Jun;
Kobayashi, Masahiko;
Meetei, Amom Ruhikanta;
Maehara, Yoshihiko;
Yamamoto, Ken-ichi;
Kamiya, Kenji;
Matsuura, Akira;
Matsuda, Tomonari;
Ikura, Tsuyoshi;
Ishiai, Masamichi;
Takata, Minoru

Publication type:

Article

Structural dynamics of possible late-stage intermediates in folding of quadruplex DNA studied by molecular simulations.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 14, p. 7128, doi. 10.1093/nar/gkt412

By:

Stadlbauer, Petr;
Krepl, Miroslav;
Cheatham, Thomas E.;
Koča, Jaroslav;
Šponer, Jiří

Publication type:

Article

Human TREX component Thoc5 affects alternative polyadenylation site choice by recruiting mammalian cleavage factor I.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 14, p. 7060, doi. 10.1093/nar/gkt414

By:

Katahira, Jun;
Okuzaki, Daisuke;
Inoue, Hitomi;
Yoneda, Yoshihiro;
Maehara, Kazumitsu;
Ohkawa, Yasuyuki

Publication type:

Article

Prospero-related homeobox 1 (Prox1) functions as a novel modulator of retinoic acid-related orphan receptors α- and γ-mediated transactivation.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 14, p. 6992, doi. 10.1093/nar/gkt447

By:

Takeda, Yukimasa;
Jetten, Anton M.

Publication type:

Article

The RNA polymerase trigger loop functions in all three phases of the transcription cycle.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 14, p. 7048, doi. 10.1093/nar/gkt433

By:

Fouqueau, Thomas;
Zeller, Mirijam E.;
Cheung, Alan C.;
Cramer, Patrick;
Thomm, Michael

Publication type:

Article

Uridylation prevents 3′ trimming of oligoadenylated mRNAs.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 14, p. 7115, doi. 10.1093/nar/gkt465

By:

Sement, François Michaël;
Ferrier, Emilie;
Zuber, Hélène;
Merret, Rémy;
Alioua, Malek;
Deragon, Jean-Marc;
Bousquet-Antonelli, Cécile;
Lange, Heike;
Gagliardi, Dominique

Publication type:

Article

Enhanced and prolonged baculovirus-mediated expression by incorporating recombinase system and in cis elements: a comparative study.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 14, p. e139, doi. 10.1093/nar/gkt442

By:

Sung, Li-Yu;
Chen, Chiu-Ling;
Lin, Shih-Yeh;
Hwang, Shiaw-Min;
Lu, Chia-Hsin;
Li, Kuei-Chang;
Lan, Alice S.;
Hu, Yu-Chen

Publication type:

Article

Discovering high-resolution patterns of differential DNA methylation that correlate with gene expression changes.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 14, p. 6816, doi. 10.1093/nar/gkt482

By:

VanderKraats, Nathan D.;
Hiken, Jeffrey F.;
Decker, Keith F.;
Edwards, John R.

Publication type:

Article

DNA G-quadruplex formation in response to remote downstream transcription activity: long-range sensing and signal transducing in DNA double helix.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 14, p. 7144, doi. 10.1093/nar/gkt443

By:

Zhang, Chao;
Liu, Hong-he;
Zheng, Ke-wei;
Hao, Yu-hua;
Tan, Zheng

Publication type:

Article

Density-dependent cooperative non-specific binding in solid-phase SELEX affinity selection.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 14, p. 7167, doi. 10.1093/nar/gkt477

By:

Ozer, Abdullah;
White, Brian S.;
Lis, John T.;
Shalloway, David

Publication type:

Article

CLIP-based prediction of mammalian microRNA binding sites.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 14, p. e138, doi. 10.1093/nar/gkt435

By:

Liu, Chaochun;
Mallick, Bibekanand;
Long, Dang;
Rennie, William A.;
Wolenc, Adam;
Carmack, C. Steven;
Ding, Ye

Publication type:

Article

Cryo-EM structures of the late-stage assembly intermediates of the bacterial 50S ribosomal subunit.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 14, p. 7073

By:

Li, Ningning;
Chen, Yuling;
Guo, Qiang;
Zhang, Yixiao;
Yuan, Yi;
Ma, Chengying;
Deng, Haiteng;
Lei, Jianlin;
Gao, Ning

Publication type:

Article

Chromosomal deletions and inversions mediated by TALENs and CRISPR/Cas in zebrafish.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 14, p. e141, doi. 10.1093/nar/gkt464

By:

Xiao, An;
Wang, Zhanxiang;
Hu, Yingying;
Wu, Yingdan;
Luo, Zhou;
Yang, Zhipeng;
Zu, Yao;
Li, Wenyuan;
Huang, Peng;
Tong, Xiangjun;
Zhu, Zuoyan;
Lin, Shuo;
Zhang, Bo

Publication type:

Article

Real-time single-molecule tethered particle motion analysis reveals mechanistic similarities and contrasts of Flp site-specific recombinase with Cre and λ Int.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 14, p. 7031, doi. 10.1093/nar/gkt424

By:

Fan, Hsiu-Fang;
Ma, Chien-Hui;
Jayaram, Makkuni

Publication type:

Article

KDM4B is a Master Regulator of the Estrogen Receptor Signalling Cascade.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 14, p. 6892, doi. 10.1093/nar/gkt469

By:

Gaughan, Luke;
Stockley, Jacqueline;
Coffey, Kelly;
O’Neill, Daniel;
Jones, Dominic L.;
Wade, Mark;
Wright, Jamie;
Moore, Madeleine;
Tse, Sandy;
Rogerson, Lynsey;
Robson, Craig N.

Publication type:

Article

ATHLATES: accurate typing of human leukocyte antigen through exome sequencing.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 14, p. e142, doi. 10.1093/nar/gkt481

By:

Liu, Chang;
Yang, Xiao;
Duffy, Brian;
Mohanakumar, Thalachallour;
Mitra, Robi D.;
Zody, Michael C.;
Pfeifer, John D.

Publication type:

Article

The pneumococcal MgaSpn virulence transcriptional regulator generates multimeric complexes on linear double-stranded DNA.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 14, p. 6975, doi. 10.1093/nar/gkt445

By:

Solano-Collado, Virtu;
Lurz, Rudi;
Espinosa, Manuel;
Bravo, Alicia

Publication type:

Article

iPcc: a novel feature extraction method for accurate disease class discovery and prediction.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 14, p. e143, doi. 10.1093/nar/gkt343

By:

Ren, Xianwen;
Wang, Yong;
Zhang, Xiang-Sun;
Jin, Qi

Publication type:

Article

Structural and mechanistic basis of anti-termination of Rho-dependent transcription termination by bacteriophage P4 capsid protein Psu.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 14, p. 6839, doi. 10.1093/nar/gkt336

By:

Ranjan, Amitabh;
Sharma, Savita;
Banerjee, Ramanuj;
Sen, Udayaditya;
Sen, Ranjan

Publication type:

Article

Allelic exclusion of the immunoglobulin heavy chain locus is independent of its nuclear localization in mature B cells.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 14, p. 6905, doi. 10.1093/nar/gkt491

By:

Holwerda, Sjoerd J. B.;
van de Werken, Harmen J. G.;
Ribeiro de Almeida, Claudia;
Bergen, Ingrid M.;
de Bruijn, Marjolein J. W.;
Verstegen, Marjon J. A. M.;
Simonis, Marieke;
Splinter, Erik;
Wijchers, Patrick J.;
Hendriks, Rudi W.;
de Laat, Wouter

Publication type:

Article

Cooperative working of bacterial chromosome replication proteins generated by a reconstituted protein expression system.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 14, p. 7176, doi. 10.1093/nar/gkt489

By:

Fujiwara, Kei;
Katayama, Tsutomu;
Nomura, Shin-ichiro M.

Publication type:

Article

Nuclear import of RNA polymerase II is coupled with nucleocytoplasmic shuttling of the RNA polymerase II-associated protein 2.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 14, p. 6881, doi. 10.1093/nar/gkt455

By:

Forget, Diane;
Lacombe, Andrée-Anne;
Cloutier, Philippe;
Lavallée-Adam, Mathieu;
Blanchette, Mathieu;
Coulombe, Benoit

Publication type:

Article

Computational analysis of bacterial RNA-Seq data.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 14, p. e140, doi. 10.1093/nar/gkt444

By:

McClure, Ryan;
Balasubramanian, Divya;
Sun, Yan;
Bobrovskyy, Maksym;
Sumby, Paul;
Genco, Caroline A.;
Vanderpool, Carin K.;
Tjaden, Brian

Publication type:

Article

Structural insights into the targeting of mRNA GU-rich elements by the three RRMs of CELF1.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 14, p. 7153, doi. 10.1093/nar/gkt470

By:

Edwards, John M.;
Long, Jed;
de Moor, Cornelia H.;
Emsley, Jonas;
Searle, Mark S.

Publication type:

Article

The role of the C-terminal helix of U1A protein in the interaction with U1hpII RNA.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 14, p. 7092, doi. 10.1093/nar/gkt326

By:

Law, Michael J.;
Lee, Diane S.;
Lee, Charlene S.;
Anglim, Paul P.;
Haworth, Ian S.;
Laird-Offringa, Ite A.

Publication type:

Article