Works matching IS 03051048 AND DT 2013 AND VI 41 AND IP 11

Results: 43

Dynamic changes in 5-hydroxymethylation signatures underpin early and late events in drug exposed liver.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 11, p. 5639, doi. 10.1093/nar/gkt232

By:

Thomson, John P.;
Hunter, Jennifer M.;
Lempiäinen, Harri;
Müller, Arne;
Terranova, Rémi;
Moggs, Jonathan G.;
Meehan, Richard R.

Publication type:

Article

HP1 promotes tumor suppressor BRCA1 functions during the DNA damage response.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 11, p. 5784, doi. 10.1093/nar/gkt231

By:

Lee, Young-Ho;
Kuo, Ching-Ying;
Stark, Jeremy M.;
Shih, Hsiu-Ming;
Ann, David K.

Publication type:

Article

Computational identification of functional introns: high positional conservation of introns that harbor RNA genes.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 11, p. 5604, doi. 10.1093/nar/gkt244

By:

Chorev, Michal;
Carmel, Liran

Publication type:

Article

Meander: visually exploring the structural variome using space-filling curves.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 11, p. e118, doi. 10.1093/nar/gkt254

By:

Pavlopoulos, Georgios A.;
Kumar, Parveen;
Sifrim, Alejandro;
Sakai, Ryo;
Lin, Meng Lay;
Voet, Thierry;
Moreau, Yves;
Aerts, Jan

Publication type:

Article

5-Aza-2′-deoxycytidine causes replication lesions that require Fanconi anemia-dependent homologous recombination for repair.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 11, p. 5827, doi. 10.1093/nar/gkt270

By:

Orta, Manuel Luís;
Calderón-Montaño, José Manuel;
Domínguez, Inmaculada;
Pastor, Nuria;
Burgos-Morón, Estefanía;
López-Lázaro, Miguel;
Cortés, Felipe;
Mateos, Santiago;
Helleday, Thomas

Publication type:

Article

The actinobacterial transcription factor RbpA binds to the principal sigma subunit of RNA polymerase.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 11, p. 5679, doi. 10.1093/nar/gkt277

By:

Tabib-Salazar, Aline;
Liu, Bing;
Doughty, Philip;
Lewis, Richard A.;
Ghosh, Somadri;
Parsy, Marie-Laure;
Simpson, Peter J.;
O’Dwyer, Kathleen;
Matthews, Steve J.;
Paget, Mark S.

Publication type:

Article

Mitochondrial DNA replication proceeds via a ‘bootlace’ mechanism involving the incorporation of processed transcripts.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 11, p. 5837, doi. 10.1093/nar/gkt196

By:

Reyes, Aurelio;
Kazak, Lawrence;
Wood, Stuart R.;
Yasukawa, Takehiro;
Jacobs, Howard T.;
Holt, Ian J.

Publication type:

Article

Tumor suppressor p53 plays a key role in induction of both tristetraprolin and let-7 in human cancer cells.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 11, p. 5614, doi. 10.1093/nar/gkt222

By:

Lee, Ji Young;
Kim, Hyo Jeong;
Yoon, Nal Ae;
Lee, Won Hyeok;
Min, Young Joo;
Ko, Byung Kyun;
Lee, Byung Ju;
Lee, Aran;
Cha, Hee Jeong;
Cho, Wha Ja;
Park, Jeong Woo

Publication type:

Article

Thermodynamic studies of a series of homologous HIV-1 TAR RNA ligands reveal that loose binders are stronger Tat competitors than tight ones.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 11, p. 5851, doi. 10.1093/nar/gkt237

By:

Pascale, Lise;
Azoulay, Stéphane;
Di Giorgio, Audrey;
Zenacker, Laura;
Gaysinski, Marc;
Clayette, Pascal;
Patino, Nadia

Publication type:

Article

Nucleic Acids Research - Editorial Board.

Published in:: Nucleic Acids Research, 2013, v. 41, n. 11, p. ii, doi. 10.1093/nar/gks1392
Publication type:: Article

Development of an assay to measure mutagenic non-homologous end-joining repair activity in mammalian cells.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 11, p. e115, doi. 10.1093/nar/gkt255

By:

Bindra, Ranjit S.;
Goglia, Alexander G.;
Jasin, Maria;
Powell, Simon N.

Publication type:

Article

RNA global alignment in the joint sequence–structure space using elastic shape analysis.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 11, p. e114, doi. 10.1093/nar/gkt187

By:

Laborde, Jose;
Robinson, Daniel;
Srivastava, Anuj;
Klassen, Eric;
Zhang, Jinfeng

Publication type:

Article

Reconstitution of hemisomes on budding yeast centromeric DNA.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 11, p. 5769, doi. 10.1093/nar/gkt314

By:

Furuyama, Takehito;
Codomo, Christine A.;
Henikoff, Steven

Publication type:

Article

Cell-free co-production of an orthogonal transfer RNA activates efficient site-specific non-natural amino acid incorporation.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 11, p. 5949, doi. 10.1093/nar/gkt226

By:

Albayrak, Cem;
Swartz, James R.

Publication type:

Article

Details of ssDNA annealing revealed by an HSV-1 ICP8–ssDNA binary complex.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 11, p. 5927, doi. 10.1093/nar/gkt266

By:

Tolun, Gökhan;
Makhov, Alexander M.;
Ludtke, Steven J.;
Griffith, Jack D.

Publication type:

Article

Hfq-bridged ternary complex is important for translation activation of rpoS by DsrA.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 11, p. 5938, doi. 10.1093/nar/gkt276

By:

Wang, Weiwei;
Wang, Lijun;
Wu, Jihui;
Gong, Qingguo;
Shi, Yunyu

Publication type:

Article

Massively parallel characterization of restriction endonucleases.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 11, p. e119, doi. 10.1093/nar/gkt257

By:

Kamps-Hughes, Nick;
Quimby, Aine;
Zhu, Zhenyu;
Johnson, Eric A.

Publication type:

Article

Computational analyses of transcriptomic data reveal the dynamic organization of the Escherichia coli chromosome under different conditions.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 11, p. 5594, doi. 10.1093/nar/gkt261

By:

Ma, Qin;
Yin, Yanbin;
Schell, Mark A.;
Zhang, Han;
Li, Guojun;
Xu, Ying

Publication type:

Article

TherMos: Estimating protein–DNA binding energies from in vivo binding profiles.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 11, p. 5555, doi. 10.1093/nar/gkt250

By:

Sun, Wenjie;
Hu, Xiaoming;
Lim, Michael H. K.;
Ng, Calista K. L.;
Choo, Siew Hua;
Castro, Diogo S.;
Drechsel, Daniela;
Guillemot, François;
Kolatkar, Prasanna R.;
Jauch, Ralf;
Prabhakar, Shyam

Publication type:

Article

The Scaffold attachment factor b1 (Safb1) regulates myogenic differentiation by facilitating the transition of myogenic gene chromatin from a repressed to an activated state.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 11, p. 5704, doi. 10.1093/nar/gkt285

By:

Hernández-Hernández, J. Manuel;
Mallappa, Chandrashekara;
Nasipak, Brian T.;
Oesterreich, Steffi;
Imbalzano, Anthony N.

Publication type:

Article

Subscriptions.

Published in:: Nucleic Acids Research, 2013, v. 41, n. 11, p. iii, doi. 10.1093/nar/gks1416
Publication type:: Article

COHCAP: an integrative genomic pipeline for single-nucleotide resolution DNA methylation analysis.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 11, p. e117, doi. 10.1093/nar/gkt242

By:

Warden, Charles D.;
Lee, Heehyoung;
Tompkins, Joshua D.;
Li, Xiaojin;
Wang, Charles;
Riggs, Arthur D.;
Yu, Hua;
Jove, Richard;
Yuan, Yate-Ching

Publication type:

Article

An aromatic residue switch in enhancer-dependent bacterial RNA polymerase controls transcription intermediate complex activity.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 11, p. 5874, doi. 10.1093/nar/gkt271

By:

Wiesler, Simone C.;
Weinzierl, Robert O. J.;
Buck, Martin

Publication type:

Article

The pre-mRNA retention and splicing complex controls tRNA maturation by promoting TAN1 expression.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 11, p. 5669, doi. 10.1093/nar/gkt269

By:

Zhou, Yang;
Chen, Changchun;
Johansson, Marcus J. O.

Publication type:

Article

RecJ-like protein from Pyrococcus furiosus has 3′–5′ exonuclease activity on RNA: implications for proofreading of 3′-mismatched RNA primers in DNA replication.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 11, p. 5817, doi. 10.1093/nar/gkt275

By:

Yuan, Hui;
Liu, Xi-Peng;
Han, Zhong;
Allers, Thorsten;
Hou, Jing-Li;
Liu, Jian-Hua

Publication type:

Article

De novo piRNA cluster formation in the Drosophila germ line triggered by transgenes containing a transcribed transposon fragment.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 11, p. 5757, doi. 10.1093/nar/gkt310

By:

Olovnikov, Ivan;
Ryazansky, Sergei;
Shpiz, Sergey;
Lavrov, Sergey;
Abramov, Yuri;
Vaury, Chantal;
Jensen, Silke;
Kalmykova, Alla

Publication type:

Article

High-efficiency and heritable gene targeting in mouse by transcription activator-like effector nucleases.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 11, p. e120, doi. 10.1093/nar/gkt258

By:

Qiu, Zhongwei;
Liu, Meizhen;
Chen, Zhaohua;
Shao, Yanjiao;
Pan, Hongjie;
Wei, Gaigai;
Yu, Chao;
Zhang, Long;
Li, Xia;
Wang, Ping;
Fan, Heng-Yu;
Du, Bing;
Liu, Bin;
Liu, Mingyao;
Li, Dali

Publication type:

Article

A novel cis-acting element from the 3′UTR of DNA damage-binding protein 2 mRNA links transcriptional and post-transcriptional regulation of gene expression.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 11, p. 5692, doi. 10.1093/nar/gkt279

By:

Melanson, Brian D.;
Cabrita, Miguel A.;
Bose, Reetesh;
Hamill, Jeffrey D.;
Pan, Elysia;
Brochu, Christian;
Marcellus, Kristen A.;
Zhao, Tong T.;
Holcik, Martin;
McKay, Bruce C.

Publication type:

Article

Crystal structures of Escherichia coli exonuclease I in complex with single-stranded DNA provide insights into the mechanism of processive digestion.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 11, p. 5887, doi. 10.1093/nar/gkt278

By:

Korada, Sai Krishna C.;
Johns, Trevor D.;
Smith, Christopher E.;
Jones, Nathan D.;
McCabe, Kimberly A.;
Bell, Charles E.

Publication type:

Article

Sequence features of yeast and human core promoters that are predictive of maximal promoter activity.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 11, p. 5569, doi. 10.1093/nar/gkt256

By:

Lubliner, Shai;
Keren, Leeat;
Segal, Eran

Publication type:

Article

Laser capture microdissection–reduced representation bisulfite sequencing (LCM-RRBS) maps changes in DNA methylation associated with gonadectomy-induced adrenocortical neoplasia in the mouse.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 11, p. e116, doi. 10.1093/nar/gkt230

By:

Schillebeeckx, Maximiliaan;
Schrade, Anja;
Löbs, Ann-Kathrin;
Pihlajoki, Marjut;
Wilson, David B.;
Mitra, Robi D.

Publication type:

Article

Nucleocapsid protein structures from orthobunyaviruses reveal insight into ribonucleoprotein architecture and RNA polymerization.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 11, p. 5912, doi. 10.1093/nar/gkt268

By:

Ariza, Antonio;
Tanner, Sian J.;
Walter, Cheryl T.;
Dent, Kyle C.;
Shepherd, Dale A.;
Wu, Weining;
Matthews, Susan V.;
Hiscox, Julian A.;
Green, Todd J.;
Luo, Ming;
Elliott, Richard M.;
Fooks, Anthony R.;
Ashcroft, Alison E.;
Stonehouse, Nicola J.;
Ranson, Neil A.;
Barr, John N.;
Edwards, Thomas A.

Publication type:

Article

Reciprocal regulation of the basic helix–loop–helix/Per–Arnt–Sim partner proteins, Arnt and Arnt2, during neuronal differentiation.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 11, p. 5626, doi. 10.1093/nar/gkt206

By:

Hao, Nan;
Bhakti, Veronica L. D.;
Peet, Daniel J.;
Whitelaw, Murray L.

Publication type:

Article

Models incorporating chromatin modification data identify functionally important p53 binding sites.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 11, p. 5582, doi. 10.1093/nar/gkt260

By:

Lim, Ji-Hyun;
Iggo, Richard D.;
Barker, Daniel

Publication type:

Article

Homeodomain-interacting protein kinase 2-dependent repression of myogenic differentiation is relieved by its caspase-mediated cleavage.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 11, p. 5731, doi. 10.1093/nar/gkt262

By:

de la Vega, Laureano;
Hornung, Juliane;
Kremmer, Elisabeth;
Milanovic, Maja;
Schmitz, M. Lienhard

Publication type:

Article

Single molecule analysis of DNA wrapping and looping by a circular 14mer wheel of the bacteriophage 186 CI repressor.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 11, p. 5746, doi. 10.1093/nar/gkt298

By:

Wang, Haowei;
Dodd, Ian B.;
Dunlap, David D.;
Shearwin, Keith E.;
Finzi, Laura

Publication type:

Article

Nucleic Acids Research.

Published in:: Nucleic Acids Research, 2013, v. 41, n. 11, p. i, doi. 10.1093/nar/gks1366
Publication type:: Article

Din7 and Mhr1 expression levels regulate double-strand-break–induced replication and recombination of mtDNA at ori5 in yeast.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 11, p. 5799, doi. 10.1093/nar/gkt273

By:

Ling, Feng;
Hori, Akiko;
Yoshitani, Ayako;
Niu, Rong;
Yoshida, Minoru;
Shibata, Takehiko

Publication type:

Article

Metabolic tinker: an online tool for guiding the design of synthetic metabolic pathways.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 11, p. e113, doi. 10.1093/nar/gkt234

By:

McClymont, Kent;
Soyer, Orkun S.

Publication type:

Article

A novel role for Sem1 and TREX-2 in transcription involves their impact on recruitment and H2B deubiquitylation activity of SAGA.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 11, p. 5655, doi. 10.1093/nar/gkt272

By:

García-Oliver, Encar;
Pascual-García, Pau;
García-Molinero, Varinia;
Lenstra, Tineke L.;
Holstege, Frank C. P.;
Rodríguez-Navarro, Susana

Publication type:

Article

Structure and mechanism of the 2′,3′ phosphatase component of the bacterial Pnkp-Hen1 RNA repair system.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 11, p. 5864, doi. 10.1093/nar/gkt221

By:

Wang, Li Kai;
Smith, Paul;
Shuman, Stewart

Publication type:

Article

Insulator protein Su(Hw) recruits SAGA and Brahma complexes and constitutes part of Origin Recognition Complex-binding sites in the Drosophila genome.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 11, p. 5717, doi. 10.1093/nar/gkt297

By:

Vorobyeva, Nadezhda E.;
Mazina, Marina U.;
Golovnin, Anton K.;
Kopytova, Daria V.;
Gurskiy, Dmitriy Y.;
Nabirochkina, Elena N.;
Georgieva, Sofia G.;
Georgiev, Pavel G.;
Krasnov, Aleksey N.

Publication type:

Article

Exploring mRNA 3′-UTR G-quadruplexes: evidence of roles in both alternative polyadenylation and mRNA shortening.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 11, p. 5898, doi. 10.1093/nar/gkt265

By:

Beaudoin, Jean-Denis;
Perreault, Jean-Pierre

Publication type:

Article