Works matching IS 03051048 AND DT 2012 AND VI 40 AND IP 7

Results: 49

A central fragment of ribosomal protein S26 containing the eukaryote-specific motif YxxPKxYxK is a key component of the ribosomal binding site of mRNA region 5′ of the E site codon.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 7, p. 3056, doi. 10.1093/nar/gkr1212

By:

Sharifulin, Dmitri;
Khairulina, Yulia;
Ivanov, Anton;
Meschaninova, Maria;
Ven'yaminova, Aliya;
Graifer, Dmitri;
Karpova, Galina

Publication type:

Article

IKKα contributes to UVB-induced VEGF expression by regulating AP-1 transactivation.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 7, p. 2940, doi. 10.1093/nar/gkr1216

By:

Dong, Wen;
Li, Yi;
Gao, Ming;
Hu, Meiru;
Li, Xiaoguang;
Mai, Sanyue;
Guo, Ning;
Yuan, Shengtao;
Song, Lun

Publication type:

Article

A highly efficient and effective motif discovery method for ChIP-seq/ChIP-chip data using positional information.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 7, p. e50, doi. 10.1093/nar/gkr1135

By:

Ma, Xiaotu;
Kulkarni, Ashwinikumar;
Zhang, Zhihua;
Xuan, Zhenyu;
Serfling, Robert;
Zhang, Michael Q.

Publication type:

Article

MCScanX: a toolkit for detection and evolutionary analysis of gene synteny and collinearity.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 7, p. e49, doi. 10.1093/nar/gkr1293

By:

Wang, Yupeng;
Tang, Haibao;
DeBarry, Jeremy D.;
Tan, Xu;
Li, Jingping;
Wang, Xiyin;
Lee, Tae-ho;
Jin, Huizhe;
Marler, Barry;
Guo, Hui;
Kissinger, Jessica C.;
Paterson, Andrew H.

Publication type:

Article

2A peptides provide distinct solutions to driving stop-carry on translational recoding.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 7, p. 3143, doi. 10.1093/nar/gkr1176

By:

Sharma, Pamila;
Yan, Fu;
Doronina, Victoria A.;
Escuin-Ordinas, Helena;
Ryan, Martin D.;
Brown, Jeremy D.

Publication type:

Article

Configuring robust DNA strand displacement reactions for in situ molecular analyses.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 7, p. 3289, doi. 10.1093/nar/gkr1209

By:

Duose, Dzifa Y.;
Schweller, Ryan M.;
Zimak, Jan;
Rogers, Arthur R.;
Hittelman, Walter N.;
Diehl, Michael R.

Publication type:

Article

Structural and functional analysis of the archaeal endonuclease Nob1.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 7, p. 3259, doi. 10.1093/nar/gkr1186

By:

Veith, Thomas;
Martin, Roman;
Wurm, Jan P.;
Weis, Benjamin L.;
Duchardt-Ferner, Elke;
Safferthal, Charlotta;
Hennig, Raoul;
Mirus, Oliver;
Bohnsack, Markus T.;
Wöhnert, Jens;
Schleiff, Enrico

Publication type:

Article

Structure of Musashi1 in a complex with target RNA: the role of aromatic stacking interactions.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 7, p. 3218, doi. 10.1093/nar/gkr1139

By:

Ohyama, Takako;
Nagata, Takashi;
Tsuda, Kengo;
Kobayashi, Naohiro;
Imai, Takao;
Okano, Hideyuki;
Yamazaki, Toshio;
Katahira, Masato

Publication type:

Article

A rapid assay for affinity and kinetics of molecular interactions with nucleic acids.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 7, p. e48, doi. 10.1093/nar/gkr1299

By:

Donaldson, Gregory P.;
Roelofs, Kevin G.;
Luo, Yiling;
Sintim, Herman O.;
Lee, Vincent T.

Publication type:

Article

The telomeric transcriptome of Schizosaccharomyces pombe.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 7, p. 2995, doi. 10.1093/nar/gkr1153

By:

Bah, Amadou;
Wischnewski, Harry;
Shchepachev, Vadim;
Azzalin, Claus M.

Publication type:

Article

Multiple conformations of SAM-II riboswitch detected with SAXS and NMR spectroscopy.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 7, p. 3117, doi. 10.1093/nar/gkr1154

By:

Chen, Bin;
Zuo, Xiaobing;
Wang, Yun-Xing;
Dayie, T. Kwaku

Publication type:

Article

Modular architecture of eukaryotic RNase P and RNase MRP revealed by electron microscopy.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 7, p. 3275, doi. 10.1093/nar/gkr1217

By:

Hipp, Katharina;
Galani, Kyriaki;
Batisse, Claire;
Prinz, Simone;
Böttcher, Bettina

Publication type:

Article

The structure and selectivity of the SR protein SRSF2 RRM domain with RNA.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 7, p. 3232, doi. 10.1093/nar/gkr1164

By:

Phelan, Marie M.;
Goult, Benjamin T.;
Clayton, Jonathan C.;
Hautbergue, Guillaume M.;
Wilson, Stuart A.;
Lian, Lu-Yun

Publication type:

Article

Structural and functional insights into DNA-end processing by the archaeal HerA helicase–NurA nuclease complex.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 7, p. 3183, doi. 10.1093/nar/gkr1157

By:

Blackwood, John K.;
Rzechorzek, Neil J.;
Abrams, Andrew S.;
Maman, Joseph D.;
Pellegrini, Luca;
Robinson, Nicholas P.

Publication type:

Article

Use of ChIP-Seq data for the design of a multiple promoter-alignment method.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 7, p. e52, doi. 10.1093/nar/gkr1292

By:

Erb, Ionas;
González-Vallinas, Juan R.;
Bussotti, Giovanni;
Blanco, Enrique;
Eyras, Eduardo;
Notredame, Cédric

Publication type:

Article

Nucleic Acids Research - Editorial Board.

Published in:: Nucleic Acids Research, 2012, v. 40, n. 7, p. ii, doi. 10.1093/nar/gks089
Publication type:: Article

The orientation of the C-terminal domain of the Saccharomyces cerevisiae Rap1 protein is determined by its binding to DNA.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 7, p. 3197, doi. 10.1093/nar/gkr1166

By:

Matot, Béatrice;
Le Bihan, Yann-Vaï;
Lescasse, Rachel;
Pérez, Javier;
Miron, Simona;
David, Gabriel;
Castaing, Bertrand;
Weber, Patrick;
Raynal, Bertrand;
Zinn-Justin, Sophie;
Gasparini, Sylvaine;
Le Du, Marie-Hélène

Publication type:

Article

Predicting the strength of UP-elements and full-length E. coli σE promoters.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 7, p. 2907, doi. 10.1093/nar/gkr1190

By:

Rhodius, Virgil A.;
Mutalik, Vivek K.;
Gross, Carol A.

Publication type:

Article

Subscriptions.

Published in:: Nucleic Acids Research, 2012, v. 40, n. 7, p. iii, doi. 10.1093/nar/gks133
Publication type:: Article

Structural transitions in the transcription elongation complexes of bacterial RNA polymerase during σ-dependent pausing.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 7, p. 3078, doi. 10.1093/nar/gkr1158

By:

Zhilina, Ekaterina;
Esyunina, Daria;
Brodolin, Konstantin;
Kulbachinskiy, Andrey

Publication type:

Article

The post-transcriptional trans-acting regulator, TbZFP3, co-ordinates transmission-stage enriched mRNAs in Trypanosoma brucei.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 7, p. 2869, doi. 10.1093/nar/gkr1106

By:

Walrad, Pegine B.;
Capewell, Paul;
Fenn, Katelyn;
Matthews, Keith R.

Publication type:

Article

An in silico model for identification of small RNAs in whole bacterial genomes: characterization of antisense RNAs in pathogenic Escherichia coli and Streptococcus agalactiae strains.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 7, p. 2846, doi. 10.1093/nar/gkr1141

By:

Pichon, Christophe;
du Merle, Laurence;
Caliot, Marie Elise;
Trieu-Cuot, Patrick;
Le Bouguénec, Chantal

Publication type:

Article

Metal-induced DNA translocation leads to DNA polymerase conformational activation.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 7, p. 2974, doi. 10.1093/nar/gkr1218

By:

Kirby, Thomas W.;
DeRose, Eugene F.;
Cavanaugh, Nisha A.;
Beard, William A.;
Shock, David D.;
Mueller, Geoffrey A.;
Wilson, Samuel H.;
London, Robert E.

Publication type:

Article

Nucleic Acids Research.

Published in:: Nucleic Acids Research, 2012, v. 40, n. 7, p. i, doi. 10.1093/nar/gks111
Publication type:: Article

HDAC1 regulates pluripotency and lineage specific transcriptional networks in embryonic and trophoblast stem cells.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 7, p. 2925, doi. 10.1093/nar/gkr1151

By:

Kidder, Benjamin L.;
Palmer, Stephen

Publication type:

Article

Translation of partially overlapping psbD-psbC mRNAs in chloroplasts: the role of 5′-processing and translational coupling.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 7, p. 3152, doi. 10.1093/nar/gkr1185

By:

Adachi, Yuka;
Kuroda, Hiroshi;
Yukawa, Yasushi;
Sugiura, Masahiro

Publication type:

Article

Structural insights into the Cdt1-mediated MCM2–7 chromatin loading.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 7, p. 3208, doi. 10.1093/nar/gkr1118

By:

Liu, Changdong;
Wu, Rentian;
Zhou, Bo;
Wang, Jiafeng;
Wei, Zhun;
Tye, Bik K.;
Liang, Chun;
Zhu, Guang

Publication type:

Article

Crystal structure of the DNA-bound VapBC2 antitoxin/toxin pair from Rickettsia felis.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 7, p. 3245

By:

Maté, María J.;
Vincentelli, Renaud;
Foos, Nicolas;
Raoult, Didier;
Cambillau, Christian;
Ortiz-Lombardía, Miguel

Publication type:

Article

Transcriptome-wide discovery of circular RNAs in Archaea.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 7, p. 3131, doi. 10.1093/nar/gkr1009

By:

Danan, Miri;
Schwartz, Schraga;
Edelheit, Sarit;
Sorek, Rotem

Publication type:

Article

Quantitative prediction of 3D solution shape and flexibility of nucleic acid nanostructures.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 7, p. 2862, doi. 10.1093/nar/gkr1173

By:

Kim, Do-Nyun;
Kilchherr, Fabian;
Dietz, Hendrik;
Bathe, Mark

Publication type:

Article

Protein-mediated protection as the predominant mechanism for defining processed mRNA termini in land plant chloroplasts.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 7, p. 3092, doi. 10.1093/nar/gkr1137

By:

Zhelyazkova, Petya;
Hammani, Kamel;
Rojas, Margarita;
Voelker, Rodger;
Vargas-Suárez, Martín;
Börner, Thomas;
Barkan, Alice

Publication type:

Article

A comprehensive framework for prioritizing variants in exome sequencing studies of Mendelian diseases.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 7, p. e53, doi. 10.1093/nar/gkr1257

By:

Li, Miao-Xin;
Gui, Hong-Sheng;
Kwan, Johnny S. H.;
Bao, Su-Ying;
Sham, Pak C.

Publication type:

Article

Solution structure of the dimerization domain of the eukaryotic stalk P1/P2 complex reveals the structural organization of eukaryotic stalk complex.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 7, p. 3172, doi. 10.1093/nar/gkr1143

By:

Lee, Ka-Ming;
Yu, Conny Wing-Heng;
Chiu, Teddy Yu-Hin;
Sze, Kong-Hung;
Shaw, Pang-Chui;
Wong, Kam-Bo

Publication type:

Article

Identification of a core set of signature cell cycle genes whose relative order of time to peak expression is conserved across species.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 7, p. 2823

By:

Fernández, Miguel A.;
Rueda, Cristina;
Peddada, Shyamal D.

Publication type:

Article

Identification of tumor-specific Salmonella Typhimurium promoters and their regulatory logic.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 7, p. 2984, doi. 10.1093/nar/gkr1041

By:

Leschner, Sara;
Deyneko, Igor V.;
Lienenklaus, Stefan;
Wolf, Kathrin;
Bloecker, Helmut;
Bumann, Dirk;
Loessner, Holger;
Weiss, Siegfried

Publication type:

Article

Non-coding telomeric and subtelomeric transcripts are differentially regulated by telomeric and heterochromatin assembly factors in fission yeast.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 7, p. 2956, doi. 10.1093/nar/gkr1155

By:

Greenwood, Jessica;
Cooper, Julia Promisel

Publication type:

Article

Functional binding of hexanucleotides to 3C protease of hepatitis A virus.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 7, p. 3042, doi. 10.1093/nar/gkr1152

By:

Blaum, Bärbel S.;
Wünsche, Winfried;
Benie, Andrew J.;
Kusov, Yuri;
Peters, Hannelore;
Gauss-Müller, Verena;
Peters, Thomas;
Sczakiel, Georg

Publication type:

Article

Stringency of start codon selection modulates autoregulation of translation initiation factor eIF5.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 7, p. 2898, doi. 10.1093/nar/gkr1192

By:

Loughran, Gary;
Sachs, Matthew S.;
Atkins, John F.;
Ivanov, Ivaylo P.

Publication type:

Article

New function for the RNA helicase p68/DDX5 as a modifier of MBNL1 activity on expanded CUG repeats.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 7, p. 3159, doi. 10.1093/nar/gkr1228

By:

Laurent, François-Xavier;
Sureau, Alain;
Klein, Arnaud F.;
Trouslard, François;
Gasnier, Erwan;
Furling, Denis;
Marie, Joëlle

Publication type:

Article

Regulation of polysome assembly on the endoplasmic reticulum by a coiled-coil protein, p180.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 7, p. 3006, doi. 10.1093/nar/gkr1197

By:

Ueno, Tomonori;
Kaneko, Keiko;
Sata, Tetsutaro;
Hattori, Shunji;
Ogawa-Goto, Kiyoko

Publication type:

Article

MeCP2 binds to nucleosome free (linker DNA) regions and to H3K9/H3K27 methylated nucleosomes in the brain.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 7, p. 2884, doi. 10.1093/nar/gkr1066

By:

Thambirajah, Anita A.;
Ng, Marlee K.;
Frehlick, Lindsay J.;
Li, Andra;
Serpa, Jason J.;
Petrotchenko, Evgeniy V.;
Silva-Moreno, Begonia;
Missiaen, Kristal K.;
Borchers, Christoph H.;
Adam Hall, J.;
Mackie, Ryan;
Lutz, Frank;
Gowen, Brent E.;
Hendzel, Michael;
Georgel, Philippe T.;
Ausió, Juan

Publication type:

Article

PfAlbas constitute a new eukaryotic DNA/RNA-binding protein family in malaria parasites.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 7, p. 3066, doi. 10.1093/nar/gkr1215

By:

Chêne, Arnaud;
Vembar, Shruthi S.;
Rivière, Loïc;
Lopez-Rubio, José Juan;
Claes, Aurelie;
Siegel, T. Nicolai;
Sakamoto, Hiroshi;
Scheidig-Benatar, Christine;
Hernandez-Rivas, Rosaura;
Scherf, Artur

Publication type:

Article

Structural bias in T4 RNA ligase-mediated 3′-adapter ligation.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 7, p. e54, doi. 10.1093/nar/gkr1263

By:

Zhuang, Fanglei;
Fuchs, Ryan T.;
Sun, Zhiyi;
Zheng, Yu;
Robb, G. Brett

Publication type:

Article

Human PSF concentrates DNA and stimulates duplex capture in DMC1-mediated homologous pairing.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 7, p. 3031, doi. 10.1093/nar/gkr1229

By:

Morozumi, Yuichi;
Ino, Ryohei;
Takaku, Motoki;
Hosokawa, Mihoko;
Chuma, Shinichiro;
Kurumizaka, Hitoshi

Publication type:

Article

Improved systematic tRNA gene annotation allows new insights into the evolution of mitochondrial tRNA structures and into the mechanisms of mitochondrial genome rearrangements.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 7, p. 2833, doi. 10.1093/nar/gkr1131

By:

Jühling, Frank;
Pütz, Joern;
Bernt, Matthias;
Donath, Alexander;
Middendorf, Martin;
Florentz, Catherine;
Stadler, Peter F.

Publication type:

Article

Correction of RT–qPCR data for genomic DNA-derived signals with ValidPrime.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 7, p. e51, doi. 10.1093/nar/gkr1259

By:

Laurell, Henrik;
Iacovoni, Jason S.;
Abot, Anne;
Svec, David;
Maoret, Jean-José;
Arnal, Jean-François;
Kubista, Mikael

Publication type:

Article

N-terminal constraint activates the catalytic subunit of the DNA-dependent protein kinase in the absence of DNA or Ku.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 7, p. 2964, doi. 10.1093/nar/gkr1211

By:

Meek, Katheryn;
Lees-Miller, Susan P.;
Modesti, Mauro

Publication type:

Article

Short non-coding RNA fragments accumulating in chloroplasts: footprints of RNA binding proteins?

Published in:

Nucleic Acids Research, 2012, v. 40, n. 7, p. 3106, doi. 10.1093/nar/gkr1138

By:

Ruwe, Hannes;
Schmitz-Linneweber, Christian

Publication type:

Article

Structural activation of the transcriptional repressor EthR from Mycobacterium tuberculosis by single amino acid change mimicking natural and synthetic ligands.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 7, p. 3018, doi. 10.1093/nar/gkr1113

By:

Carette, Xavier;
Blondiaux, Nicolas;
Willery, Eve;
Hoos, Sylviane;
Lecat-Guillet, Nathalie;
Lens, Zoé;
Wohlkönig, Alexandre;
Wintjens, René;
Soror, Sameh H.;
Frénois, Frédéric;
Dirié, Bertrand;
Villeret, Vincent;
England, Patrick;
Lippens, Guy;
Deprez, Benoit;
Locht, Camille;
Willand, Nicolas;
Baulard, Alain R.

Publication type:

Article