Works matching IS 03051048 AND DT 2012 AND VI 40 AND IP 6

Results: 46

SCOREM: statistical consolidation of redundant expression measures.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 6, p. e46, doi. 10.1093/nar/gkr1270

By:

Schneider, Stephanie;
Smith, Temple;
Hansen, Ulla

Publication type:

Article

Nucleic Acids Research - Editorial Board.

Published in:: Nucleic Acids Research, 2012, v. 40, n. 6, p. ii, doi. 10.1093/nar/gks088
Publication type:: Article

Naphthyridine tetramer with a pre-organized structure for 1:1 binding to a CGG/CGG sequence.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 6, p. 2771, doi. 10.1093/nar/gkr1148

By:

Dohno, Chikara;
Kohyama, Izumi;
Hong, Changfeng;
Nakatani, Kazuhiko

Publication type:

Article

Hobbes: optimized gram-based methods for efficient read alignment.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 6, p. e41, doi. 10.1093/nar/gkr1246

By:

Ahmadi, Athena;
Behm, Alexander;
Honnalli, Nagesh;
Li, Chen;
Weng, Lingjie;
Xie, Xiaohui

Publication type:

Article

The allele distribution in next-generation sequencing data sets is accurately described as the result of a stochastic branching process.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 6, p. 2426, doi. 10.1093/nar/gkr1073

By:

Heinrich, Verena;
Stange, Jens;
Dickhaus, Thorsten;
Imkeller, Peter;
Krüger, Ulrike;
Bauer, Sebastian;
Mundlos, Stefan;
Robinson, Peter N.;
Hecht, Jochen;
Krawitz, Peter M.

Publication type:

Article

Structure and stability of DNA containing an aristolactam II-dA lesion: implications for the NER recognition of bulky adducts.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 6, p. 2759, doi. 10.1093/nar/gkr1094

By:

Lukin, Mark;
Zaliznyak, Tanya;
Johnson, Francis;
de los Santos, Carlos

Publication type:

Article

An integer linear programming approach for finding deregulated subgraphs in regulatory networks.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 6, p. e43, doi. 10.1093/nar/gkr1227

By:

Backes, Christina;
Rurainski, Alexander;
Klau, Gunnar W.;
Müller, Oliver;
Stöckel, Daniel;
Gerasch, Andreas;
Küntzer, Jan;
Maisel, Daniela;
Ludwig, Nicole;
Hein, Matthias;
Keller, Andreas;
Burtscher, Helmut;
Kaufmann, Michael;
Meese, Eckart;
Lenhof, Hans-Peter

Publication type:

Article

Efficient large-scale protein sequence comparison and gene matching to identify orthologs and co-orthologs.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 6, p. e44, doi. 10.1093/nar/gkr1261

By:

Mahmood, Khalid;
Webb, Geoffrey I.;
Song, Jiangning;
Whisstock, James C.;
Konagurthu, Arun S.

Publication type:

Article

mTOR signaling regulates the processing of pre-rRNA in human cells.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 6, p. 2527, doi. 10.1093/nar/gkr1040

By:

Iadevaia, Valentina;
Zhang, Ze;
Jan, Eric;
Proud, Christopher G.

Publication type:

Article

Functional redundancy between DNA ligases I and III in DNA replication in vertebrate cells.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 6, p. 2599, doi. 10.1093/nar/gkr1024

By:

Arakawa, Hiroshi;
Bednar, Theresa;
Wang, Minli;
Paul, Katja;
Mladenov, Emil;
Bencsik-Theilen, Alena A.;
Iliakis, George

Publication type:

Article

Structural, energetic and dynamic properties of guanine(C8)–thymine(N3) cross-links in DNA provide insights on susceptibility to nucleotide excision repair.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 6, p. 2506, doi. 10.1093/nar/gkr1087

By:

Ding, Shuang;
Kropachev, Konstantin;
Cai, Yuqin;
Kolbanovskiy, Marina;
Durandina, Svetlana A.;
Liu, Zhi;
Shafirovich, Vladimir;
Broyde, Suse;
Geacintov, Nicholas E.

Publication type:

Article

Metastases suppressor NME2 associates with telomere ends and telomerase and reduces telomerase activity within cells.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 6, p. 2554, doi. 10.1093/nar/gkr1109

By:

Kar, Anirban;
Saha, Dhurjhoti;
Purohit, Gunjan;
Singh, Ankita;
Kumar, Parveen;
Yadav, Vinod Kumar;
Kumar, Pankaj;
Thakur, Ram Krishna;
Chowdhury, Shantanu

Publication type:

Article

Gene network inference and visualization tools for biologists: application to new human transcriptome datasets.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 6, p. 2377, doi. 10.1093/nar/gkr902

By:

Hurley, Daniel;
Araki, Hiromitsu;
Tamada, Yoshinori;
Dunmore, Ben;
Sanders, Deborah;
Humphreys, Sally;
Affara, Muna;
Imoto, Seiya;
Yasuda, Kaori;
Tomiyasu, Yuki;
Tashiro, Kosuke;
Savoie, Christopher;
Cho, Vicky;
Smith, Stephen;
Kuhara, Satoru;
Miyano, Satoru;
Charnock-Jones, D. Stephen;
Crampin, Edmund J.;
Print, Cristin G.

Publication type:

Article

Evolutionary pressures on simple sequence repeats in prokaryotic coding regions.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 6, p. 2399, doi. 10.1093/nar/gkr1078

By:

Lin, Wei-Hsiang;
Kussell, Edo

Publication type:

Article

Promiscuous DNA synthesis by human DNA polymerase θ.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 6, p. 2611, doi. 10.1093/nar/gkr1102

By:

Hogg, Matthew;
Sauer-Eriksson, A. Elisabeth;
Johansson, Erik

Publication type:

Article

Neuron-specific ELAV/Hu proteins suppress HuR mRNA during neuronal differentiation by alternative polyadenylation.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 6, p. 2734, doi. 10.1093/nar/gkr1114

By:

Mansfield, Kyle D.;
Keene, Jack D.

Publication type:

Article

Identification and characterization of the RNA binding surface of the pentatricopeptide repeat protein.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 6, p. 2712, doi. 10.1093/nar/gkr1084

By:

Kobayashi, Keiko;
Kawabata, Masuyo;
Hisano, Keizo;
Kazama, Tomohiko;
Matsuoka, Ken;
Sugita, Mamoru;
Nakamura, Takahiro

Publication type:

Article

An exogenous chloroplast genome for complex sequence manipulation in algae.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 6, p. 2782, doi. 10.1093/nar/gkr1008

By:

O'Neill, Bryan M.;
Mikkelson, Kari L.;
Gutierrez, Noel M.;
Cunningham, Jennifer L.;
Wolff, Kari L.;
Szyjka, Shawn J.;
Yohn, Christopher B.;
Redding, Kevin E.;
Mendez, Michael J.

Publication type:

Article

Functional mammalian spliceosomal complex E contains SMN complex proteins in addition to U1 and U2 snRNPs.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 6, p. 2639, doi. 10.1093/nar/gkr1056

By:

Makarov, Evgeny M.;
Owen, Nicholas;
Bottrill, Andrew;
Makarova, Olga V.

Publication type:

Article

A novel zinc-finger nuclease platform with a sequence-specific cleavage module.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 6, p. 2623, doi. 10.1093/nar/gkr1112

By:

Schierling, Benno;
Dannemann, Nadine;
Gabsalilow, Lilia;
Wende, Wolfgang;
Cathomen, Toni;
Pingoud, Alfred

Publication type:

Article

Highly specific unnatural base pair systems as a third base pair for PCR amplification.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 6, p. 2793, doi. 10.1093/nar/gkr1068

By:

Yamashige, Rie;
Kimoto, Michiko;
Takezawa, Yusuke;
Sato, Akira;
Mitsui, Tsuneo;
Yokoyama, Shigeyuki;
Hirao, Ichiro

Publication type:

Article

Subscriptions.

Published in:: Nucleic Acids Research, 2012, v. 40, n. 6, p. iii, doi. 10.1093/nar/gks132
Publication type:: Article

Chromatin structure of adenovirus DNA throughout infection.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 6, p. 2369, doi. 10.1093/nar/gkr1076

By:

Giberson, Andrea N.;
Davidson, Adam R.;
Parks, Robin J.

Publication type:

Article

Comprehensive homing endonuclease target site specificity profiling reveals evolutionary constraints and enables genome engineering applications.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 6, p. 2587, doi. 10.1093/nar/gkr1072

By:

Li, Hui;
Ulge, Umut Y.;
Hovde, Blake T.;
Doyle, Lindsey A.;
Monnat, Raymond J.

Publication type:

Article

5′-Triphosphate-RNA-independent activation of RIG-I via RNA aptamer with enhanced antiviral activity.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 6, p. 2724, doi. 10.1093/nar/gkr1098

By:

Hwang, Sun-Young;
Sun, Hwa-Young;
Lee, Kwang-Hoon;
Oh, Byung-Ha;
Cha, Yu Jin;
Kim, Byeang Hyean;
Yoo, Joo-Yeon

Publication type:

Article

Nucleic Acids Research.

Published in:: Nucleic Acids Research, 2012, v. 40, n. 6, p. i, doi. 10.1093/nar/gks110
Publication type:: Article

Mre11 modulates the fidelity of fusion between short telomeres in human cells.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 6, p. 2518, doi. 10.1093/nar/gkr1117

By:

Tankimanova, Maira;
Capper, Rebecca;
Letsolo, Boitelo T.;
Rowson, Jan;
Jones, Rhiannon E.;
Britt-Compton, Bethan;
Taylor, A. Malcolm R.;
Baird, Duncan M.

Publication type:

Article

Different effects of the TAR structure on HIV-1 and HIV-2 genomic RNA translation.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 6, p. 2653, doi. 10.1093/nar/gkr1093

By:

Soto-Rifo, Ricardo;
Limousin, Taran;
Rubilar, Paulina S.;
Ricci, Emiliano P.;
Décimo, Didier;
Moncorgé, Olivier;
Trabaud, Mary-Anne;
André, Patrice;
Cimarelli, Andrea;
Ohlmann, Théophile

Publication type:

Article

Modulation of CRISPR locus transcription by the repeat-binding protein Cbp1 in Sulfolobus.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 6, p. 2470, doi. 10.1093/nar/gkr1111

By:

Deng, Ling;
Kenchappa, Chandra S.;
Peng, Xu;
She, Qunxin;
Garrett, Roger A.

Publication type:

Article

A universal description for the experimental behavior of salt-(in)dependent oligocation-induced DNA condensation.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 6, p. 2807, doi. 10.1093/nar/gks214

By:

Korolev, Nikolay;
Berezhnoy, Nikolay V.;
Eom, Khee Dong;
Tam, James P.;
Nordenskiöld, Lars

Publication type:

Article

In vitro experimental system for analysis of transcription–translation coupling.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 6, p. e45, doi. 10.1093/nar/gkr1262

By:

Castro-Roa, Daniel;
Zenkin, Nikolay

Publication type:

Article

RNASEQR—a streamlined and accurate RNA-seq sequence analysis program.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 6, p. e42, doi. 10.1093/nar/gkr1248

By:

Chen, Leslie Y.;
Wei, Kuo-Chen;
Huang, Abner C.-Y.;
Wang, Kai;
Huang, Chiung-Yin;
Yi, Danielle;
Tang, Chuan Yi;
Galas, David J.;
Hood, Leroy E.

Publication type:

Article

A pre-initiation complex at the 3′-end of genes drives antisense transcription independent of divergent sense transcription.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 6, p. 2432, doi. 10.1093/nar/gkr1121

By:

Murray, Struan C.;
Serra Barros, Ana;
Brown, David A.;
Dudek, Peter;
Ayling, Jonathan;
Mellor, Jane

Publication type:

Article

MUSI: an integrated system for identifying multiple specificity from very large peptide or nucleic acid data sets.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 6, p. e47, doi. 10.1093/nar/gkr1294

By:

Kim, TaeHyung;
Tyndel, Marc S.;
Huang, Haiming;
Sidhu, Sachdev S.;
Bader, Gary D.;
Gfeller, David;
Kim, Philip M.

Publication type:

Article

GADD45α inhibition of DNMT1 dependent DNA methylation during homology directed DNA repair.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 6, p. 2481, doi. 10.1093/nar/gkr1115

By:

Lee, Bongyong;
Morano, Annalisa;
Porcellini, Antonio;
Muller, Mark T.

Publication type:

Article

Analysis of the RNA chaperoning activity of the hepatitis C virus core protein on the conserved 3′X region of the viral genome.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 6, p. 2540, doi. 10.1093/nar/gkr1140

By:

Sharma, Kamal Kant;
de Rocquigny, Hugues;
Darlix, Jean Luc;
Lavergne, Jean-Pierre;
Pénin, François;
Lessinger, Jean-Marc;
Mély, Yves

Publication type:

Article

The N-terminal domains of TRF1 and TRF2 regulate their ability to condense telomeric DNA.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 6, p. 2566, doi. 10.1093/nar/gkr1116

By:

Poulet, Anaïs;
Pisano, Sabrina;
Faivre-Moskalenko, Cendrine;
Pei, Bei;
Tauran, Yannick;
Haftek-Terreau, Zofia;
Brunet, Frédéric;
Le Bihan, Yann-Vaï;
Ledu, Marie-Hélène;
Montel, Fabien;
Hugo, Nicolas;
Amiard, Simon;
Argoul, Françoise;
Chaboud, Annie;
Gilson, Eric;
Giraud-Panis, Marie-Josèphe

Publication type:

Article

The eIF3c/NIP1 PCI domain interacts with RNA and RACK1/ASC1 and promotes assembly of translation preinitiation complexes.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 6, p. 2683, doi. 10.1093/nar/gkr1083

By:

Kouba, Tomáš;
Rutkai, Edit;
Karásková, Martina;
Valášek, Leoš Shivaya

Publication type:

Article

The PolyA tail length of yeast histone mRNAs varies during the cell cycle and is influenced by Sen1p and Rrp6p.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 6, p. 2700, doi. 10.1093/nar/gkr1108

By:

Beggs, Suzanne;
James, Tharappel C.;
Bond, Ursula

Publication type:

Article

Transcription co-activator SAYP mediates the action of STAT activator.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 6, p. 2445, doi. 10.1093/nar/gkr1165

By:

Panov, Vladislav V.;
Kuzmina, Julia L.;
Doronin, Semen A.;
Kopantseva, Marina R.;
Nabirochkina, Elena N.;
Georgieva, Sofia G.;
Vorobyeva, Nadezhda E.;
Shidlovskii, Yulii V.

Publication type:

Article

Sequential action of ATPase, ATP, ADP, Pi and dsDNA in procapsid-free system to enlighten mechanism in viral dsDNA packaging.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 6, p. 2577, doi. 10.1093/nar/gkr841

By:

Schwartz, Chad;
Fang, Huaming;
Huang, Lisa;
Guo, Peixuan

Publication type:

Article

Lack of recognition by global-genome nucleotide excision repair accounts for the high mutagenicity and persistence of aristolactam-DNA adducts.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 6, p. 2494, doi. 10.1093/nar/gkr1095

By:

Sidorenko, Victoria S.;
Yeo, Jung-Eun;
Bonala, Radha R.;
Johnson, Francis;
Schärer, Orlando D.;
Grollman, Arthur P.

Publication type:

Article

Recognition of methylated DNA through methyl-CpG binding domain proteins.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 6, p. 2747, doi. 10.1093/nar/gkr1057

By:

Zou, Xueqing;
Ma, Wen;
Solov'yov, Ilia A.;
Chipot, Christophe;
Schulten, Klaus

Publication type:

Article

TDP-43 regulates global translational yield by splicing of exon junction complex component SKAR.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 6, p. 2668, doi. 10.1093/nar/gkr1082

By:

Fiesel, Fabienne C.;
Weber, Stephanie S.;
Supper, Jochen;
Zell, Andreas;
Kahle, Philipp J.

Publication type:

Article

Gene Array Analyzer: alternative usage of gene arrays to study alternative splicing events.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 6, p. 2414, doi. 10.1093/nar/gkr1110

By:

Gellert, Pascal;
Teranishi, Mizue;
Jenniches, Katharina;
De Gaspari, Piera;
John, David;
grosse Kreymborg, Karsten;
Braun, Thomas;
Uchida, Shizuka

Publication type:

Article

Alternative splicing and nonsense-mediated decay modulate expression of important regulatory genes in Arabidopsis.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 6, p. 2454, doi. 10.1093/nar/gkr932

By:

Kalyna, Maria;
Simpson, Craig G.;
Syed, Naeem H.;
Lewandowska, Dominika;
Marquez, Yamile;
Kusenda, Branislav;
Marshall, Jacqueline;
Fuller, John;
Cardle, Linda;
McNicol, Jim;
Dinh, Huy Q.;
Barta, Andrea;
Brown, John W. S.

Publication type:

Article