Works matching IS 03051048 AND DT 2012 AND VI 40 AND IP 20

Results: 63

The THO complex cooperates with the nuclear RNA surveillance machinery to control small nucleolar RNA expression.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 20, p. 10240, doi. 10.1093/nar/gks838

By:

Larochelle, Marc;
Lemay, Jean-François;
Bachand, François

Publication type:

Article

Complementary strand relocation may play vital roles in RecA-based homology recognition.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 20, p. 10441, doi. 10.1093/nar/gks769

By:

Peacock-Villada, Alexandra;
Yang, Darren;
Danilowicz, Claudia;
Feinstein, Efraim;
Pollock, Nolan;
McShan, Sarah;
Coljee, Vincent;
Prentiss, Mara

Publication type:

Article

The architecture of eukaryotic translation.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 20, p. 10098, doi. 10.1093/nar/gks825

By:

Chu, Dominique;
von der Haar, Tobias

Publication type:

Article

DNA breathing dynamics distinguish binding from nonbinding consensus sites for transcription factor YY1 in cells.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 20, p. 10116, doi. 10.1093/nar/gks758

By:

Alexandrov, Boian S.;
Fukuyo, Yayoi;
Lange, Martin;
Horikoshi, Nobuo;
Gelev, Vladimir;
Rasmussen, Kim Ø.;
Bishop, Alan R.;
Usheva, Anny

Publication type:

Article

PALB2 self-interaction controls homologous recombination.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 20, p. 10312, doi. 10.1093/nar/gks807

By:

Buisson, Rémi;
Masson, Jean-Yves

Publication type:

Article

DOT1A-dependent H3K76 methylation is required for replication regulation in Trypanosoma brucei.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 20, p. 10302, doi. 10.1093/nar/gks801

By:

Gassen, Alwine;
Brechtefeld, Doris;
Schandry, Niklas;
Arteaga-Salas, J. Manuel;
Israel, Lars;
Imhof, Axel;
Janzen, Christian J.

Publication type:

Article

Promoter propagation in prokaryotes.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 20, p. 10032, doi. 10.1093/nar/gks787

By:

Matus-Garcia, Mariana;
Nijveen, Harm;
van Passel, Mark W. J.

Publication type:

Article

miR-182 inhibits Schwann cell proliferation and migration by targeting FGF9 and NTM, respectively at an early stage following sciatic nerve injury.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 20, p. 10356, doi. 10.1093/nar/gks750

By:

Yu, Bin;
Qian, Tianmei;
Wang, Yongjun;
Zhou, Songlin;
Ding, Guohui;
Ding, Fei;
Gu, Xiaosong

Publication type:

Article

MutSβ and histone deacetylase complexes promote expansions of trinucleotide repeats in human cells.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 20, p. 10324, doi. 10.1093/nar/gks810

By:

Gannon, Anne-Marie M.;
Frizzell, Aisling;
Healy, Evan;
Lahue, Robert S.

Publication type:

Article

A comprehensive comparison of RNA-Seq-based transcriptome analysis from reads to differential gene expression and cross-comparison with microarrays: a case study in Saccharomyces cerevisiae.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 20, p. 10084, doi. 10.1093/nar/gks804

By:

Nookaew, Intawat;
Papini, Marta;
Pornputtapong, Natapol;
Scalcinati, Gionata;
Fagerberg, Linn;
Uhlén, Matthias;
Nielsen, Jens

Publication type:

Article

The antibiotic Furvina® targets the P-site of 30S ribosomal subunits and inhibits translation initiation displaying start codon bias.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 20, p. 10366, doi. 10.1093/nar/gks822

By:

Fabbretti, Attilio;
Brandi, Letizia;
Petrelli, Dezemona;
Pon, Cynthia L.;
Castañedo, Nilo R.;
Medina, Ricardo;
Gualerzi, Claudio O.

Publication type:

Article

Metal and ligand binding to the HIV-RNase H active site are remotely monitored by Ile556.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 20, p. 10543, doi. 10.1093/nar/gks791

By:

Zheng, Xunhai;
Mueller, Geoffrey A.;
DeRose, Eugene F.;
London, Robert E.

Publication type:

Article

Recognition of the 70S ribosome and polysome by the RNA degradosome in Escherichia coli.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 20, p. 10417, doi. 10.1093/nar/gks739

By:

Tsai, Yi-Chun;
Du, Dijun;
Domínguez-Malfavón, Lilianha;
Dimastrogiovanni, Daniela;
Cross, Jonathan;
Callaghan, Anastasia J.;
García-Mena, Jaime;
Luisi, Ben F.

Publication type:

Article

Crystal structure of RlmM, the 2′O-ribose methyltransferase for C2498 of Escherichia coli 23S rRNA.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 20, p. 10507, doi. 10.1093/nar/gks727

By:

Punekar, Avinash S.;
Shepherd, Tyson R.;
Liljeruhm, Josefine;
Forster, Anthony C.;
Selmer, Maria

Publication type:

Article

RTL-P: a sensitive approach for detecting sites of 2′-O-methylation in RNA molecules.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 20, p. e157, doi. 10.1093/nar/gks698

By:

Dong, Zhi-Wei;
Shao, Peng;
Diao, Li-Ting;
Zhou, Hui;
Yu, Chun-Hong;
Qu, Liang-Hu

Publication type:

Article

Multipartite control of the DNA translocase, Mfd.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 20, p. 10408, doi. 10.1093/nar/gks775

By:

Smith, Abigail J.;
Pernstich, Christian;
Savery, Nigel J.

Publication type:

Article

X-ray structure of the fourth type of archaeal tRNA splicing endonuclease: insights into the evolution of a novel three-unit composition and a unique loop involved in broad substrate specificity.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 20, p. 10554, doi. 10.1093/nar/gks826

By:

Hirata, Akira;
Fujishima, Kosuke;
Yamagami, Ryota;
Kawamura, Takuya;
Banfield, Jillian F.;
Kanai, Akio;
Hori, Hiroyuki

Publication type:

Article

A global sampling approach to designing and reengineering RNA secondary structures.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 20, p. 10041, doi. 10.1093/nar/gks768

By:

Levin, Alex;
Lis, Mieszko;
Ponty, Yann;
O’Donnell, Charles W.;
Devadas, Srinivas;
Berger, Bonnie;
Waldispühl, Jérôme

Publication type:

Article

PARP activation regulates the RNA-binding protein NONO in the DNA damage response to DNA double-strand breaks.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 20, p. 10287, doi. 10.1093/nar/gks798

By:

Krietsch, Jana;
Caron, Marie-Christine;
Gagné, Jean-Philippe;
Ethier, Chantal;
Vignard, Julien;
Vincent, Michel;
Rouleau, Michèle;
Hendzel, Michael J.;
Poirier, Guy G.;
Masson, Jean-Yves

Publication type:

Article

Structural basis for the substrate recognition and catalysis of peptidyl-tRNA hydrolase.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 20, p. 10521, doi. 10.1093/nar/gks790

By:

Ito, Kosuke;
Murakami, Ryo;
Mochizuki, Masahiro;
Qi, Hao;
Shimizu, Yoshihiro;
Miura, Kin-ichiro;
Ueda, Takuya;
Uchiumi, Toshio

Publication type:

Article

The bacterial ribonuclease P holoenzyme requires specific, conserved residues for efficient catalysis and substrate positioning.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 20, p. 10384, doi. 10.1093/nar/gks744

By:

Reiter, Nicholas J.;
Osterman, Amy K.;
Mondragón, Alfonso

Publication type:

Article

Solitary restriction endonucleases in prokaryotic genomes.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 20, p. 10107, doi. 10.1093/nar/gks853

By:

Ershova, Anna S.;
Karyagina, Anna S.;
Vasiliev, Mikhail O.;
Lyashchuk, Alexander M.;
Lunin, Vladimir G.;
Spirin, Sergey A.;
Alexeevski, Andrei V.

Publication type:

Article

RNAsnap™: a rapid, quantitative and inexpensive, method for isolating total RNA from bacteria.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 20, p. e156, doi. 10.1093/nar/gks680

By:

Stead, Mark B.;
Agrawal, Ankit;
Bowden, Katherine E.;
Nasir, Rakia;
Mohanty, Bijoy K.;
Meagher, Richard B.;
Kushner, Sidney R.

Publication type:

Article

En bloc transfer of polyubiquitin chains to PCNA in vitro is mediated by two different human E2–E3 pairs.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 20, p. 10394, doi. 10.1093/nar/gks763

By:

Masuda, Yuji;
Suzuki, Miki;
Kawai, Hidehiko;
Hishiki, Asami;
Hashimoto, Hiroshi;
Masutani, Chikahide;
Hishida, Takashi;
Suzuki, Fumio;
Kamiya, Kenji

Publication type:

Article

A high-throughput, quantitative cell-based screen for efficient tailoring of RNA device activity.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 20, p. e154, doi. 10.1093/nar/gks636

By:

Liang, Joe C.;
Chang, Andrew L.;
Kennedy, Andrew B.;
Smolke, Christina D.

Publication type:

Article

Misacylation of tRNA with methionine in Saccharomyces cerevisiae.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 20, p. 10494, doi. 10.1093/nar/gks805

By:

Wiltrout, Elizabeth;
Goodenbour, Jeffrey M.;
Fréchin, Mathieu;
Pan, Tao

Publication type:

Article

Excision of 5-hydroxymethyluracil and 5-carboxylcytosine by the thymine DNA glycosylase domain: its structural basis and implications for active DNA demethylation.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 20, p. 10203, doi. 10.1093/nar/gks845

By:

Hashimoto, Hideharu;
Hong, Samuel;
Bhagwat, Ashok S.;
Zhang, Xing;
Cheng, Xiaodong

Publication type:

Article

The slicing activity of miRNA-specific Argonautes is essential for the miRNA pathway in C. elegans.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 20, p. 10452, doi. 10.1093/nar/gks748

By:

Bouasker, Samir;
Simard, Martin J.

Publication type:

Article

Modelling and simulating generic RNA-Seq experiments with the flux simulator.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 20, p. 10073, doi. 10.1093/nar/gks666

By:

Griebel, Thasso;
Zacher, Benedikt;
Ribeca, Paolo;
Raineri, Emanuele;
Lacroix, Vincent;
Guigó, Roderic;
Sammeth, Michael

Publication type:

Article

Bacterial topoisomerase I and topoisomerase III relax supercoiled DNA via distinct pathways.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 20, p. 10432, doi. 10.1093/nar/gks780

By:

Terekhova, Ksenia;
Gunn, Kathryn H.;
Marko, John F.;
Mondragón, Alfonso

Publication type:

Article

Mitochondrial DNA copy number is regulated in a tissue specific manner by DNA methylation of the nuclear-encoded DNA polymerase gamma A.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 20, p. 10124, doi. 10.1093/nar/gks770

By:

Kelly, Richard D. W.;
Mahmud, Arsalan;
McKenzie, Matthew;
Trounce, Ian A.;
St John, Justin C.

Publication type:

Article

Repeat or not repeat?—Statistical validation of tandem repeat prediction in genomic sequences.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 20, p. 10005, doi. 10.1093/nar/gks726

By:

Schaper, Elke;
Kajava, Andrey V.;
Hauser, Alain;
Anisimova, Maria

Publication type:

Article

Yeast CAF-1 assembles histone (H3-H4)2 tetramers prior to DNA deposition.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 20, p. 10139, doi. 10.1093/nar/gks812

By:

Winkler, Duane D.;
Zhou, Hui;
Dar, Mohd A.;
Zhang, Zhiguo;
Luger, Karolin

Publication type:

Article

Identification of a two-layer regulatory network of proliferation-related microRNAs in hepatoma cells.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 20, p. 10478, doi. 10.1093/nar/gks789

By:

Huang, Yi;
Chen, Hua-Chien;
Chiang, Chao-Wei;
Yeh, Chau-Ting;
Chen, Shu-Jen;
Chou, Chen-Kung

Publication type:

Article

Chromatin modification by SUMO-1 stimulates the promoters of translation machinery genes.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 20, p. 10172, doi. 10.1093/nar/gks819

By:

Liu, Hui-wen;
Zhang, Jie;
Heine, George F.;
Arora, Mansi;
Gulcin Ozer, Hatice;
Onti-Srinivasan, Raghuram;
Huang, Kun;
Parvin, Jeffrey D.

Publication type:

Article

Nucleosome dynamics: HMGB1 relaxes canonical nucleosome structure to facilitate estrogen receptor binding.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 20, p. 10161, doi. 10.1093/nar/gks815

By:

Joshi, Sachindra R.;
Sarpong, Yaw C.;
Peterson, Ronald C.;
Scovell, William M.

Publication type:

Article

Dynamic changes in translational efficiency are deduced from codon usage of the transcriptome.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 20, p. 10053, doi. 10.1093/nar/gks772

By:

Gingold, Hila;
Dahan, Orna;
Pilpel, Yitzhak

Publication type:

Article

Discovering the hidden sub-network component in a ranked list of genes or proteins derived from genomic experiments.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 20, p. e158, doi. 10.1093/nar/gks699

By:

García-Alonso, Luz;
Alonso, Roberto;
Vidal, Enrique;
Amadoz, Alicia;
de María, Alejandro;
Minguez, Pablo;
Medina, Ignacio;
Dopazo, Joaquín

Publication type:

Article

A hybrid G-quadruplex structure formed between RNA and DNA explains the extraordinary stability of the mitochondrial R-loop.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 20, p. 10334, doi. 10.1093/nar/gks802

By:

Wanrooij, Paulina H.;
Uhler, Jay P.;
Shi, Yonghong;
Westerlund, Fredrik;
Falkenberg, Maria;
Gustafsson, Claes M.

Publication type:

Article

Benchmarking spliced alignment programs including Spaln2, an extended version of Spaln that incorporates additional species-specific features.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 20, p. e161, doi. 10.1093/nar/gks708

By:

Iwata, Hiroaki;
Gotoh, Osamu

Publication type:

Article

Cell-cycle-regulated control of VSG expression site silencing by histones and histone chaperones ASF1A and CAF-1b in Trypanosoma brucei.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 20, p. 10150, doi. 10.1093/nar/gks813

By:

Alsford, Sam;
Horn, David

Publication type:

Article

Sequence analysis of a complete 1.66 Mb Prochlorococcus marinus MED4 genome cloned in yeast.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 20, p. 10375, doi. 10.1093/nar/gks823

By:

Tagwerker, Christian;
Dupont, Christopher L.;
Karas, Bogumil J.;
Ma, Li;
Chuang, Ray-Yuan;
Benders, Gwynedd A.;
Ramon, Adi;
Novotny, Mark;
Montague, Michael G.;
Venepally, Pratap;
Brami, Daniel;
Schwartz, Ariel;
Andrews-Pfannkoch, Cynthia;
Gibson, Daniel G.;
Glass, John I.;
Smith, Hamilton O.;
Venter, J. Craig;
Hutchison, Clyde A.

Publication type:

Article

Assessing the biocompatibility of click-linked DNA in Escherichia coli.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 20, p. 10567, doi. 10.1093/nar/gks756

By:

Sanzone, A. Pia;
El-Sagheer, Afaf H.;
Brown, Tom;
Tavassoli, Ali

Publication type:

Article

Regulation of the nucleosome unwrapping rate controls DNA accessibility.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 20, p. 10215, doi. 10.1093/nar/gks747

By:

North, Justin A.;
Shimko, John C.;
Javaid, Sarah;
Mooney, Alex M.;
Shoffner, Matthew A.;
Rose, Sean D.;
Bundschuh, Ralf;
Fishel, Richard;
Ottesen, Jennifer J.;
Poirier, Michael G.

Publication type:

Article

Dynamic regulation of HIV-1 mRNA populations analyzed by single-molecule enrichment and long-read sequencing.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 20, p. 10345, doi. 10.1093/nar/gks753

By:

Ocwieja, Karen E.;
Sherrill-Mix, Scott;
Mukherjee, Rithun;
Custers-Allen, Rebecca;
David, Patricia;
Brown, Michael;
Wang, Susana;
Link, Darren R.;
Olson, Jeff;
Travers, Kevin;
Schadt, Eric;
Bushman, Frederic D.

Publication type:

Article

Mixture models and wavelet transforms reveal high confidence RNA-protein interaction sites in MOV10 PAR-CLIP data.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 20, p. e160, doi. 10.1093/nar/gks697

By:

Sievers, Cem;
Schlumpf, Tommy;
Sawarkar, Ritwick;
Comoglio, Federico;
Paro, Renato

Publication type:

Article

DNA repair endonuclease ERCC1–XPF as a novel therapeutic target to overcome chemoresistance in cancer therapy.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 20, p. 9990, doi. 10.1093/nar/gks818

By:

McNeil, Ewan M.;
Melton, David W.

Publication type:

Article

Promoters active in interphase are bookmarked during mitosis by ubiquitination.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 20, p. 10187, doi. 10.1093/nar/gks820

By:

Arora, Mansi;
Zhang, Jie;
Heine, George F.;
Ozer, Gulcin;
Liu, Hui-wen;
Huang, Kun;
Parvin, Jeffrey D.

Publication type:

Article

Nucleic Acids Research - Editorial Board.

Published in:: Nucleic Acids Research, 2012, v. 40, n. 20, p. ii, doi. 10.1093/nar/gks082
Publication type:: Article

New paradigms for conserved, multifactorial, cis-acting regulation of meiotic recombination.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 20, p. 9983, doi. 10.1093/nar/gks761

By:

Wahls, Wayne P.;
Davidson, Mari K.

Publication type:

Article