Works matching IS 03051048 AND DT 2012 AND VI 40 AND IP 18

Results: 60

Sequence signatures of direct complementarity between mRNAs and cognate proteins on multiple levels.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 18, p. 8874, doi. 10.1093/nar/gks679

By:

Hlevnjak, Mario;
Polyansky, Anton A.;
Zagrovic, Bojan

Publication type:

Article

Monitoring bypass of single replication-blocking lesions by damage avoidance in the Escherichia coli chromosome.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 18, p. 9036, doi. 10.1093/nar/gks675

By:

Pagès, Vincent;
Mazón, Gerard;
Naiman, Karel;
Philippin, Gaëlle;
Fuchs, Robert P.

Publication type:

Article

Computational identification of new structured cis-regulatory elements in the 3′-untranslated region of human protein coding genes.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 18, p. 8862, doi. 10.1093/nar/gks684

By:

Chen, Xiaowei Sylvia;
Brown, Chris M.

Publication type:

Article

The epigenetic control of E-box and Myc-dependent chromatin modifications regulate the licensing of lamin B2 origin during cell cycle.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 18, p. 9021, doi. 10.1093/nar/gks617

By:

Swarnalatha, Manickavinayaham;
Singh, Anup Kumar;
Kumar, Vijay

Publication type:

Article

Epigenetic control of alternative mRNA processing at the imprinted Herc3/Nap1l5 locus.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 18, p. 8917, doi. 10.1093/nar/gks654

By:

Cowley, Michael;
Wood, Andrew J.;
Böhm, Sabrina;
Schulz, Reiner;
Oakey, Rebecca J.

Publication type:

Article

A common feature from different subunits of a homomeric AAA+ protein contacts three spatially distinct transcription elements.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 18, p. 9139, doi. 10.1093/nar/gks661

By:

Zhang, Nan;
Joly, Nicolas;
Buck, Martin

Publication type:

Article

Phosphorothioate DNA as an antioxidant in bacteria.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 18, p. 9115, doi. 10.1093/nar/gks650

By:

Xie, Xinqiang;
Liang, Jingdan;
Pu, Tianning;
Xu, Fei;
Yao, Fen;
Yang, Yan;
Zhao, Yi-Lei;
You, Delin;
Zhou, Xiufen;
Deng, Zixin;
Wang, Zhijun

Publication type:

Article

The core regulation module of stress-responsive regulatory networks in yeast.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 18, p. 8793, doi. 10.1093/nar/gks649

By:

Kim, Dongsan;
Kim, Man-Sun;
Cho, Kwang-Hyun

Publication type:

Article

Residues of E. coli topoisomerase I conserved for interaction with a specific cytosine base to facilitate DNA cleavage.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 18, p. 9233, doi. 10.1093/nar/gks688

By:

Narula, Gagandeep;
Tse-Dinh, Yuk-Ching

Publication type:

Article

SVM2: an improved paired-end-based tool for the detection of small genomic structural variations using high-throughput single-genome resequencing data.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 18, p. e145, doi. 10.1093/nar/gks606

By:

Chiara, Matteo;
Pesole, Graziano;
Horner, David S.

Publication type:

Article

Spi-1/PU.1 activates transcription through clustered DNA occupancy in erythroleukemia.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 18, p. 8927, doi. 10.1093/nar/gks659

By:

Ridinger-Saison, Maya;
Boeva, Valentina;
Rimmelé, Pauline;
Kulakovskiy, Ivan;
Gallais, Isabelle;
Levavasseur, Benjamin;
Paccard, Caroline;
Legoix-Né, Patricia;
Morlé, François;
Nicolas, Alain;
Hupé, Philippe;
Barillot, Emmanuel;
Moreau-Gachelin, Françoise;
Guillouf, Christel

Publication type:

Article

Structural insights into recognition and repair of UV-DNA damage by Spore Photoproduct Lyase, a radical SAM enzyme.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 18, p. 9308, doi. 10.1093/nar/gks603

By:

Benjdia, Alhosna;
Heil, Korbinian;
Barends, Thomas R. M.;
Carell, Thomas;
Schlichting, Ilme

Publication type:

Article

Identification of new microRNA-regulated genes by conserved targeting in plant species.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 18, p. 8893, doi. 10.1093/nar/gks625

By:

Chorostecki, Uciel;
Crosa, Valeria A.;
Lodeyro, Anabella F.;
Bologna, Nicolás G.;
Martin, Ana P.;
Carrillo, Néstor;
Schommer, Carla;
Palatnik, Javier F.

Publication type:

Article

The solution structure of double helical arabino nucleic acids (ANA and 2′F-ANA): effect of arabinoses in duplex-hairpin interconversion.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 18, p. 9329

By:

Martín-Pintado, Nerea;
Yahyaee-Anzahaee, Maryam;
Campos-Olivas, Ramón;
Noronha, Anne M.;
Wilds, Christopher J.;
Damha, Masad J.;
González, Carlos

Publication type:

Article

Deep sequencing of RNA from immune cell-derived vesicles uncovers the selective incorporation of small non-coding RNA biotypes with potential regulatory functions.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 18, p. 9272, doi. 10.1093/nar/gks658

By:

Nolte-’t Hoen, Esther N. M.;
Buermans, Henk P. J.;
Waasdorp, Maaike;
Stoorvogel, Willem;
Wauben, Marca H. M.;
’t Hoen, Peter A. C.

Publication type:

Article

PKC phosphorylates HEXIM1 and regulates P-TEFb activity.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 18, p. 9160, doi. 10.1093/nar/gks682

By:

Fujinaga, Koh;
Barboric, Matjaz;
Li, Qintong;
Luo, Zeping;
Price, David H.;
Peterlin, B. Matija

Publication type:

Article

Functional screening for miRNAs targeting Smad4 identified miR-199a as a negative regulator of TGF-β signalling pathway.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 18, p. 9286, doi. 10.1093/nar/gks667

By:

Zhang, Yan;
Fan, Kai-Ji;
Sun, Qiang;
Chen, Ai-Zhong;
Shen, Wen-Long;
Zhao, Zhi-Hu;
Zheng, Xiao-Fei;
Yang, Xiao

Publication type:

Article

A fractal model for nuclear organization: current evidence and biological implications.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 18, p. 8783, doi. 10.1093/nar/gks586

By:

Bancaud, Aurélien;
Lavelle, Christophe;
Huet, Sébastien;
Ellenberg, Jan

Publication type:

Article

Efficient deamination of 5-methylcytosines in DNA by human APOBEC3A, but not by AID or APOBEC3G.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 18, p. 9206, doi. 10.1093/nar/gks685

By:

Wijesinghe, Priyanga;
Bhagwat, Ashok S.

Publication type:

Article

Nucleic Acids Research - Editorial Board.

Published in:: Nucleic Acids Research, 2012, v. 40, n. 18, p. ii, doi. 10.1093/nar/gks080
Publication type:: Article

Customized optimization of metabolic pathways by combinatorial transcriptional engineering.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 18, p. e142, doi. 10.1093/nar/gks549

By:

Du, Jing;
Yuan, Yongbo;
Si, Tong;
Lian, Jiazhang;
Zhao, Huimin

Publication type:

Article

Structural basis for translation termination by archaeal RF1 and GTP-bound EF1α complex.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 18, p. 9319, doi. 10.1093/nar/gks660

By:

Kobayashi, Kan;
Saito, Kazuki;
Ishitani, Ryuichiro;
Ito, Koichi;
Nureki, Osamu

Publication type:

Article

One Hand Clapping: detection of condition-specific transcription factor interactions from genome-wide gene activity data.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 18, p. 8883

By:

Dümcke, Sebastian;
Seizl, Martin;
Etzold, Stefanie;
Pirkl, Nicole;
Martin, Dietmar E.;
Cramer, Patrick;
Tresch, Achim

Publication type:

Article

The co-regulation mechanism of transcription factors in the human gene regulatory network.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 18, p. 8849, doi. 10.1093/nar/gks664

By:

Kim, Junil;
Choi, Minsoo;
Kim, Jeong-Rae;
Jin, Hua;
Kim, V. Narry;
Cho, Kwang-Hyun

Publication type:

Article

Trans-kingdom rescue of Gln-tRNAGln synthesis in yeast cytoplasm and mitochondria.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 18, p. 9171, doi. 10.1093/nar/gks689

By:

Liao, Chih-Chi;
Lin, Chen-Huan;
Chen, Shun-Jia;
Wang, Chien-Chia

Publication type:

Article

Sequencing of the smallest Apicomplexan genome from the human pathogen Babesia microti†.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 18, p. 9102, doi. 10.1093/nar/gks700

By:

Cornillot, Emmanuel;
Hadj-Kaddour, Kamel;
Dassouli, Amina;
Noel, Benjamin;
Ranwez, Vincent;
Vacherie, Benoît;
Augagneur, Yoann;
Brès, Virginie;
Duclos, Aurelie;
Randazzo, Sylvie;
Carcy, Bernard;
Debierre-Grockiego, Françoise;
Delbecq, Stéphane;
Moubri-Ménage, Karina;
Shams-Eldin, Hosam;
Usmani-Brown, Sahar;
Bringaud, Frédéric;
Wincker, Patrick;
Vivarès, Christian P.;
Schwarz, Ralph T.

Publication type:

Article

Probing hybridization parameters from microarray experiments: nearest-neighbor model and beyond.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 18, p. e138, doi. 10.1093/nar/gks475

By:

Hadiwikarta, W. W.;
Walter, J.-C.;
Hooyberghs, J.;
Carlon, E.

Publication type:

Article

IBM1, a JmjC domain-containing histone demethylase, is involved in the regulation of RNA-directed DNA methylation through the epigenetic control of RDR2 and DCL3 expression in Arabidopsis.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 18, p. 8905, doi. 10.1093/nar/gks647

By:

Fan, Di;
Dai, Yan;
Wang, Xuncheng;
Wang, Zhenjie;
He, Hang;
Yang, Hongchun;
Cao, Ying;
Deng, Xing Wang;
Ma, Ligeng

Publication type:

Article

MicroRNAs are exported from malignant cells in customized particles.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 18, p. 9125, doi. 10.1093/nar/gks656

By:

Palma, Jaime;
Yaddanapudi, Sree C.;
Pigati, Lucy;
Havens, Mallory A.;
Jeong, Sarah;
Weiner, Geoffrey A.;
Weimer, Kristina Mary Ellen;
Stern, Brittany;
Hastings, Michelle L.;
Duelli, Dominik M.

Publication type:

Article

‘Shotgun DNA synthesis’ for the high-throughput construction of large DNA molecules.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 18, p. e140, doi. 10.1093/nar/gks546

By:

Kim, Hwangbeom;
Han, Hyojun;
Ahn, Jinwoo;
Lee, Joongoo;
Cho, Namjin;
Jang, Hoon;
Kim, Hyoki;
Kwon, Sunghoon;
Bang, Duhee

Publication type:

Article

Mammalian NUMT insertion is non-random.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 18, p. 9073, doi. 10.1093/nar/gks424

By:

Tsuji, Junko;
Frith, Martin C.;
Tomii, Kentaro;
Horton, Paul

Publication type:

Article

Regulatory consequences of gene translocation in bacteria.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 18, p. 8979, doi. 10.1093/nar/gks694

By:

Block, Dena H. S.;
Hussein, Razika;
Liang, Lusha W.;
Lim, Han N.

Publication type:

Article

FunciSNP: an R/bioconductor tool integrating functional non-coding data sets with genetic association studies to identify candidate regulatory SNPs.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 18, p. e139, doi. 10.1093/nar/gks542

By:

Coetzee, Simon G.;
Rhie, Suhn K.;
Berman, Benjamin P.;
Coetzee, Gerhard A.;
Noushmehr, Houtan

Publication type:

Article

Expression of endogenous retroviruses is negatively regulated by the pluripotency marker Rex1/Zfp42.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 18, p. 8993, doi. 10.1093/nar/gks686

By:

Guallar, D.;
Pérez-Palacios, R.;
Climent, M.;
Martínez-Abadía, I.;
Larraga, A.;
Fernández-Juan, M.;
Vallejo, C.;
Muniesa, P.;
Schoorlemmer, J.

Publication type:

Article

NF45 dimerizes with NF90, Zfr and SPNR via a conserved domain that has a nucleotidyltransferase fold.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 18, p. 9356, doi. 10.1093/nar/gks696

By:

Wolkowicz, Urszula M.;
Cook, Atlanta G.

Publication type:

Article

Protein L5 is crucial for in vivo assembly of the bacterial 50S ribosomal subunit central protuberance.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 18, p. 9153, doi. 10.1093/nar/gks676

By:

Korepanov, Alexey P.;
Korobeinikova, Anna V.;
Shestakov, Sergey A.;
Garber, Maria B.;
Gongadze, George M.

Publication type:

Article

Proximity of H2A.Z containing nucleosome to the transcription start site influences gene expression levels in the mammalian liver and brain.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 18, p. 8965, doi. 10.1093/nar/gks665

By:

Bargaje, Rhishikesh;
Alam, Mohammad Parwez;
Patowary, Ashok;
Sarkar, Maharnob;
Ali, Tamer;
Gupta, Shivani;
Garg, Manali;
Singh, Meghna;
Purkanti, Ramya;
Scaria, Vinod;
Sivasubbu, Sridhar;
Brahmachari, Vani;
Pillai, Beena

Publication type:

Article

Higher order oligomerization is required for H-NS family member MvaT to form gene-silencing nucleoprotein filament.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 18, p. 8942, doi. 10.1093/nar/gks669

By:

Winardhi, Ricksen S.;
Fu, Wenbo;
Castang, Sandra;
Li, Yanan;
Dove, Simon L.;
Yan, Jie

Publication type:

Article

Computational analysis of target hub gene repression regulated by multiple and cooperative miRNAs.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 18, p. 8818, doi. 10.1093/nar/gks657

By:

Lai, Xin;
Schmitz, Ulf;
Gupta, Shailendra K.;
Bhattacharya, Animesh;
Kunz, Manfred;
Wolkenhauer, Olaf;
Vera, Julio

Publication type:

Article

Splicing of internal large exons is defined by novel cis-acting sequence elements.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 18, p. 9244, doi. 10.1093/nar/gks652

By:

Bolisetty, Mohan T.;
Beemon, Karen L.

Publication type:

Article

Fidelity of capture-enrichment for mtDNA genome sequencing: influence of NUMTs.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 18, p. e137, doi. 10.1093/nar/gks499

By:

Li, Mingkun;
Schroeder, Roland;
Ko, Albert;
Stoneking, Mark

Publication type:

Article

Detection of DNA–protein crosslinks (DPCs) by novel direct fluorescence labeling methods: distinct stabilities of aldehyde and radiation-induced DPCs.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 18, p. e143, doi. 10.1093/nar/gks601

By:

Shoulkamy, Mahmoud I.;
Nakano, Toshiaki;
Ohshima, Makiko;
Hirayama, Ryoichi;
Uzawa, Akiko;
Furusawa, Yoshiya;
Ide, Hiroshi

Publication type:

Article

Crucial role of dynamic linker histone binding and divalent ions for DNA accessibility and gene regulation revealed by mesoscale modeling of oligonucleosomes.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 18, p. 8803, doi. 10.1093/nar/gks600

By:

Collepardo-Guevara, Rosana;
Schlick, Tamar

Publication type:

Article

A NAC transcription factor and SNI1 cooperatively suppress basal pathogen resistance in Arabidopsis thaliana.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 18, p. 9182, doi. 10.1093/nar/gks683

By:

Kim, Ho Soo;
Park, Hyeong Cheol;
Kim, Kyung Eun;
Jung, Mi Soon;
Han, Hay Ju;
Kim, Sun Ho;
Kwon, Young Sang;
Bahk, Sunghwa;
An, Jonguk;
Bae, Dong Won;
Yun, Dae-Jin;
Kwak, Sang-Soo;
Chung, Woo Sik

Publication type:

Article

The CR3 motif of Rrp44p is important for interaction with the core exosome and exosome function.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 18, p. 9298, doi. 10.1093/nar/gks693

By:

Schaeffer, Daneen;
Reis, Filipa Pereira;
Johnson, Sean J.;
Arraiano, Cecília Maria;
van Hoof, Ambro

Publication type:

Article

Quantification of RNA integrity and its use for measurement of transcript number.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 18, p. e144, doi. 10.1093/nar/gks588

By:

Brisco, Michael J.;
Morley, Alexander A.

Publication type:

Article

Subscriptions.

Published in:: Nucleic Acids Research, 2012, v. 40, n. 18, p. iii, doi. 10.1093/nar/gks124
Publication type:: Article

A novel ab initio identification system of transcriptional regulation motifs in genome DNA sequences based on direct comparison scheme of signal/noise distributions.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 18, p. 8835, doi. 10.1093/nar/gks642

By:

Nakaki, Ryo;
Kang, Jiyoung;
Tateno, Masaru

Publication type:

Article

Protein kinase CK2 inactivates PRH/Hhex using multiple mechanisms to de-repress VEGF-signalling genes and promote cell survival.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 18, p. 9008, doi. 10.1093/nar/gks687

By:

Noy, Peter;
Sawasdichai, Anyaporn;
Jayaraman, Padma-Sheela;
Gaston, Kevin

Publication type:

Article

Lesion-specific DNA-binding and repair activities of human O6-alkylguanine DNA alkyltransferase.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 18, p. 9060, doi. 10.1093/nar/gks674

By:

Melikishvili, Manana;
Fried, Michael G.

Publication type:

Article