Works matching IS 03051048 AND DT 2012 AND VI 40 AND IP 16

Results: 63

Re-splicing of mature mRNA in cancer cells promotes activation of distant weak alternative splice sites.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 16, p. 7896, doi. 10.1093/nar/gks520

By:

Kameyama, Toshiki;
Suzuki, Hitoshi;
Mayeda, Akila

Publication type:

Article

Sequence dependence of transcription factor-mediated DNA looping.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 16, p. 7728, doi. 10.1093/nar/gks473

By:

Johnson, Stephanie;
Lindén, Martin;
Phillips, Rob

Publication type:

Article

Hydrogen bond formation between the naturally modified nucleobase and phosphate backbone.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 16, p. 8111, doi. 10.1093/nar/gks426

By:

Sheng, Jia;
Zhang, Wen;
Hassan, Abdalla E. A.;
Gan, Jianhua;
Soares, Alexei S.;
Geng, Song;
Ren, Yi;
Huang, Zhen

Publication type:

Article

Nucleic Acids Research.

Published in:: Nucleic Acids Research, 2012, v. 40, n. 16, p. i, doi. 10.1093/nar/gks100
Publication type:: Article

Cross talk between the nuclease and helicase activities of Dna2: role of an essential iron–sulfur cluster domain.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 16, p. 7821, doi. 10.1093/nar/gks534

By:

Pokharel, Subhash;
Campbell, Judith L.

Publication type:

Article

Quantitative proteomics profiling of the poly(ADP-ribose)-related response to genotoxic stress.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 16, p. 7788, doi. 10.1093/nar/gks486

By:

Gagné, Jean-Philippe;
Pic, Émilie;
Isabelle, Maxim;
Krietsch, Jana;
Éthier, Chantal;
Paquet, Éric;
Kelly, Isabelle;
Boutin, Michel;
Moon, Kyung-Mee;
Foster, Leonard J.;
Poirier, Guy G.

Publication type:

Article

How an exonuclease decides where to stop in trimming of nucleic acids: crystal structures of RNase T–product complexes.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 16, p. 8144, doi. 10.1093/nar/gks548

By:

Hsiao, Yu-Yuan;
Duh, Yulander;
Chen, Yi-Ping;
Wang, Yi-Ting;
Yuan, Hanna S.

Publication type:

Article

Impact of methylations of m2G966/m5C967 in 16S rRNA on bacterial fitness and translation initiation.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 16, p. 7885, doi. 10.1093/nar/gks508

By:

Burakovsky, Dmitry E.;
Prokhorova, Irina V.;
Sergiev, Petr V.;
Milón, Pohl;
Sergeeva, Olga V.;
Bogdanov, Alexey A.;
Rodnina, Marina V.;
Dontsova, Olga A.

Publication type:

Article

Genome-wide localization and expression profiling establish Sp2 as a sequence-specific transcription factor regulating vitally important genes.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 16, p. 7844, doi. 10.1093/nar/gks544

By:

Terrados, Gloria;
Finkernagel, Florian;
Stielow, Bastian;
Sadic, Dennis;
Neubert, Juliane;
Herdt, Olga;
Krause, Michael;
Scharfe, Maren;
Jarek, Michael;
Suske, Guntram

Publication type:

Article

Using a priori knowledge to align sequencing reads to their exact genomic position.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 16, p. e125

By:

Böttcher, René;
Amberg, Ronny;
Ruzius, F. P.;
Guryev, V.;
Verhaegh, Wim F. J.;
Beyerlein, Peter;
van der Zaag, P. J.

Publication type:

Article

A new strategy to reduce allelic bias in RNA-Seq readmapping.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 16, p. e127, doi. 10.1093/nar/gks425

By:

Vijaya Satya, Ravi;
Zavaljevski, Nela;
Reifman, Jaques

Publication type:

Article

Contrasting enantioselective DNA preference: chiral helical macrocyclic lanthanide complex binding to DNA.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 16, p. 8186, doi. 10.1093/nar/gks524

By:

Zhao, Chuanqi;
Ren, Jinsong;
Gregoliński, Janusz;
Lisowski, Jerzy;
Qu, Xiaogang

Publication type:

Article

Mitochondrial dynamics and autophagy aid in removal of persistent mitochondrial DNA damage in Caenorhabditis elegans.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 16, p. 7916, doi. 10.1093/nar/gks532

By:

Bess, Amanda S.;
Crocker, Tracey L.;
Ryde, Ian T.;
Meyer, Joel N.

Publication type:

Article

Bulged DNA substrates for identifying poxvirus resolvase inhibitors.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 16, p. e124, doi. 10.1093/nar/gks325

By:

Culyba, Matthew;
Hwang, Young;
Attar, Sana;
Madrid, Peter B.;
Bupp, James;
Huryn, Donna;
Sanchez, Luis;
Grobler, Jay;
Miller, Michael D.;
Bushman, Frederic D.

Publication type:

Article

Dual roles of the SUMO-interacting motif in the regulation of Srs2 sumoylation.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 16, p. 7831, doi. 10.1093/nar/gks484

By:

Kolesar, Peter;
Sarangi, Prabha;
Altmannova, Veronika;
Zhao, Xiaolan;
Krejci, Lumir

Publication type:

Article

DeltaPhage—a novel helper phage for high-valence pIX phagemid display.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 16, p. e120, doi. 10.1093/nar/gks341

By:

Nilssen, Nicolay R.;
Frigstad, Terje;
Pollmann, Sylvie;
Roos, Norbert;
Bogen, Bjarne;
Sandlie, Inger;
Løset, Geir Å.

Publication type:

Article

Prioritizing cancer-related key miRNA–target interactions by integrative genomics.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 16, p. 7653, doi. 10.1093/nar/gks538

By:

Xiao, Yun;
Guan, Jinxia;
Ping, Yanyan;
Xu, Chaohan;
Huang, Teng;
Zhao, Hongying;
Fan, Huihui;
Li, Yiqun;
Lv, Yanling;
Zhao, Tingting;
Dong, Yucui;
Ren, Huan;
Li, Xia

Publication type:

Article

Regulation of p21/CIP1/WAF-1 mediated cell-cycle arrest by RNase L and tristetraprolin, and involvement of AU-rich elements.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 16, p. 7739, doi. 10.1093/nar/gks545

By:

Al-Haj, Latifa;
Blackshear, Perry J.;
Khabar, Khalid S.A.

Publication type:

Article

Mitochondrial DNA deletions are associated with non-B DNA conformations.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 16, p. 7606, doi. 10.1093/nar/gks500

By:

Damas, Joana;
Carneiro, João;
Gonçalves, Joana;
Stewart, James B.;
Samuels, David C.;
Amorim, António;
Pereira, Filipe

Publication type:

Article

Structural flexibility of RNA as molecular basis for Hfq chaperone function.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 16, p. 8072, doi. 10.1093/nar/gks510

By:

de Almeida Ribeiro, Euripedes;
Beich-Frandsen, Mads;
Konarev, Petr V.;
Shang, Weifeng;
Večerek, Branislav;
Kontaxis, Georg;
Hämmerle, Hermann;
Peterlik, Herwig;
Svergun, Dmitri I.;
Bläsi, Udo;
Djinović-Carugo, Kristina

Publication type:

Article

Characterization of the RpoN regulon reveals differential regulation of T6SS and new flagellar operons in Vibrio cholerae O37 strain V52.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 16, p. 7766, doi. 10.1093/nar/gks567

By:

Dong, Tao G.;
Mekalanos, John J.

Publication type:

Article

Identification of the regulatory elements controlling the transmission stage-specific gene expression of PAD1 in Trypanosoma brucei.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 16, p. 7705, doi. 10.1093/nar/gks533

By:

MacGregor, Paula;
Matthews, Keith R.

Publication type:

Article

Computational mapping reveals dramatic effect of Hoogsteen breathing on duplex DNA reactivity with formaldehyde.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 16, p. 7644, doi. 10.1093/nar/gks519

By:

Bohnuud, Tanggis;
Beglov, Dmitri;
Ngan, Chi Ho;
Zerbe, Brandon;
Hall, David R.;
Brenke, Ryan;
Vajda, Sandor;
Frank-Kamenetskii, Maxim D.;
Kozakov, Dima

Publication type:

Article

Rational design and directed evolution of a bacterial-type glutaminyl-tRNA synthetase precursor.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 16, p. 7967, doi. 10.1093/nar/gks507

By:

Guo, Li-Tao;
Helgadóttir, Sunna;
Söll, Dieter;
Ling, Jiqiang

Publication type:

Article

Targeting duplex DNA with chimeric α,β-triplex-forming oligonucleotides.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 16, p. 8175, doi. 10.1093/nar/gks410

By:

Kolganova, N. A.;
Shchyolkina, A. K.;
Chudinov, A. V.;
Zasedatelev, A. S.;
Florentiev, V. L.;
Timofeev, E. N.

Publication type:

Article

Integration of Hi-C and ChIP-seq data reveals distinct types of chromatin linkages.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 16, p. 7690, doi. 10.1093/nar/gks501

By:

Lan, Xun;
Witt, Heather;
Katsumura, Koichi;
Ye, Zhenqing;
Wang, Qianben;
Bresnick, Emery H.;
Farnham, Peggy J.;
Jin, Victor X.

Publication type:

Article

FusionAnalyser: a new graphical, event-driven tool for fusion rearrangements discovery.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 16, p. e123, doi. 10.1093/nar/gks394

By:

Piazza, Rocco;
Pirola, Alessandra;
Spinelli, Roberta;
Valletta, Simona;
Redaelli, Sara;
Magistroni, Vera;
Gambacorti-Passerini, Carlo

Publication type:

Article

Subscriptions.

Published in:: Nucleic Acids Research, 2012, v. 40, n. 16, p. iii, doi. 10.1093/nar/gks122
Publication type:: Article

Selenite targets eIF4E-binding protein-1 to inhibit translation initiation and induce the assembly of non-canonical stress granules.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 16, p. 8099, doi. 10.1093/nar/gks566

By:

Fujimura, Ken;
Sasaki, Atsuo T.;
Anderson, Paul

Publication type:

Article

eIF4E-binding protein regulation of mRNAs with differential 5′-UTR secondary structure: a polyelectrostatic model for a component of protein–mRNA interactions.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 16, p. 7666, doi. 10.1093/nar/gks511

By:

Cawley, Andrew;
Warwicker, Jim

Publication type:

Article

Nucleic Acids Research - Editorial Board.

Published in:: Nucleic Acids Research, 2012, v. 40, n. 16, p. ii, doi. 10.1093/nar/gks078
Publication type:: Article

Towards characterization of DNA structure under physiological conditions in vivo at the single-molecule level using single-pair FRET.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 16, p. e121, doi. 10.1093/nar/gks333

By:

Fessl, Tomáš;
Adamec, František;
Polívka, Tomáš;
Foldynová-Trantírková, Silvie;
Vácha, František;
Trantírek, Lukáš

Publication type:

Article

Heterochromatin protein 1 gamma and IκB kinase alpha interdependence during tumour necrosis factor gene transcription elongation in activated macrophages.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 16, p. 7676, doi. 10.1093/nar/gks509

By:

Thorne, James L.;
Ouboussad, Lylia;
Lefevre, Pascal F.

Publication type:

Article

Integrated genome analysis suggests that most conserved non-coding sequences are regulatory factor binding sites.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 16, p. 7858, doi. 10.1093/nar/gks477

By:

Hemberg, Martin;
Gray, Jesse M.;
Cloonan, Nicole;
Kuersten, Scott;
Grimmond, Sean;
Greenberg, Michael E.;
Kreiman, Gabriel

Publication type:

Article

IPAVS: Integrated Pathway Resources, Analysis and Visualization System.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 16, p. 8197, doi. 10.1093/nar/gks782

By:

Sreenivasaiah, Pradeep Kumar;
Rani, Shilpa;
Cayetano, Joseph;
Arul, Novino;
Kim, Do Han

Publication type:

Article

Translation initiation without IF2-dependent GTP hydrolysis.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 16, p. 7946, doi. 10.1093/nar/gks569

By:

Fabbretti, Attilio;
Brandi, Letizia;
Milón, Pohl;
Spurio, Roberto;
Pon, Cynthia L.;
Gualerzi, Claudio O.

Publication type:

Article

Rac1 signalling modulates a STAT5/BCL-6 transcriptional switch on cell-cycle-associated target gene promoters.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 16, p. 7776, doi. 10.1093/nar/gks571

By:

Barros, Patrícia;
Lam, Eric W.-F.;
Jordan, Peter;
Matos, Paulo

Publication type:

Article

Highly efficient generation of heritable zebrafish gene mutations using homo- and heterodimeric TALENs.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 16, p. 8001, doi. 10.1093/nar/gks518

By:

Cade, Lindsay;
Reyon, Deepak;
Hwang, Woong Y.;
Tsai, Shengdar Q.;
Patel, Samir;
Khayter, Cyd;
Joung, J. Keith;
Sander, Jeffry D.;
Peterson, Randall T.;
Yeh, Jing-Ruey Joanna

Publication type:

Article

Duplicate gene enrichment and expression pattern diversification in multicellularity.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 16, p. 7597, doi. 10.1093/nar/gks464

By:

Padawer, Timothy;
Leighty, Ralph E.;
Wang, Degeng

Publication type:

Article

CTCF-mediated transcriptional regulation through cell type-specific chromosome organization in the β-globin locus.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 16, p. 7718, doi. 10.1093/nar/gks536

By:

Junier, Ivan;
Dale, Ryan K.;
Hou, Chunhui;
Képès, François;
Dean, Ann

Publication type:

Article

Molecular characterization of an adaptive response to alkylating agents in the opportunistic pathogen Aspergillus fumigatus.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 16, p. 7806, doi. 10.1093/nar/gks522

By:

O’Hanlon, Karen A.;
Margison, Geoffrey P.;
Hatch, Amy;
Fitzpatrick, David A.;
Owens, Rebecca A.;
Doyle, Sean;
Jones, Gary W.

Publication type:

Article

Exploring the DNA mimicry of the Ocr protein of phage T7.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 16, p. 8129, doi. 10.1093/nar/gks516

By:

Roberts, Gareth A.;
Stephanou, Augoustinos S.;
Kanwar, Nisha;
Dawson, Angela;
Cooper, Laurie P.;
Chen, Kai;
Nutley, Margaret;
Cooper, Alan;
Blakely, Garry W.;
Dryden, David T. F.

Publication type:

Article

Crystallographic characterization of CCG repeats.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 16, p. 8155, doi. 10.1093/nar/gks557

By:

Kiliszek, Agnieszka;
Kierzek, Ryszard;
Krzyzosiak, Wlodzimierz J.;
Rypniewski, Wojciech

Publication type:

Article

Toward site-specific, homogeneous and highly stable fluorescent silver nanoclusters fabrication on triplex DNA scaffolds.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 16, p. e122, doi. 10.1093/nar/gks387

By:

Feng, Lingyan;
Huang, Zhenzhen;
Ren, Jinsong;
Qu, Xiaogang

Publication type:

Article

Engineering domain fusion chimeras from I-OnuI family LAGLIDADG homing endonucleases.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 16, p. 7985, doi. 10.1093/nar/gks502

By:

Baxter, Sarah;
Lambert, Abigail R.;
Kuhar, Ryan;
Jarjour, Jordan;
Kulshina, Nadia;
Parmeggiani, Fabio;
Danaher, Patrick;
Gano, Jacob;
Baker, David;
Stoddard, Barry L.;
Scharenberg, Andrew M.

Publication type:

Article

LRPPRC/SLIRP suppresses PNPase-mediated mRNA decay and promotes polyadenylation in human mitochondria.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 16, p. 8033, doi. 10.1093/nar/gks506

By:

Chujo, Takeshi;
Ohira, Takayuki;
Sakaguchi, Yuriko;
Goshima, Naoki;
Nomura, Nobuo;
Nagao, Asuteka;
Suzuki, Tsutomu

Publication type:

Article

Hybridization-based reconstruction of small non-coding RNA transcripts from deep sequencing data.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 16, p. 7633, doi. 10.1093/nar/gks505

By:

Ragan, Chikako;
Mowry, Bryan J.;
Bauer, Denis C.

Publication type:

Article

Analysis of rRNA processing and translation in mammalian cells using a synthetic 18S rRNA expression system.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 16, p. 8085, doi. 10.1093/nar/gks530

By:

Burman, Luke G.;
Mauro, Vincent P.

Publication type:

Article

High-resolution structures of two complexes between thrombin and thrombin-binding aptamer shed light on the role of cations in the aptamer inhibitory activity.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 16, p. 8119, doi. 10.1093/nar/gks512

By:

Russo Krauss, Irene;
Merlino, Antonello;
Randazzo, Antonio;
Novellino, Ettore;
Mazzarella, Lelio;
Sica, Filomena

Publication type:

Article

Delineation of structural domains and identification of functionally important residues in DNA repair enzyme exonuclease VII.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 16, p. 8163, doi. 10.1093/nar/gks547

By:

Poleszak, Katarzyna;
Kaminska, Katarzyna H.;
Dunin-Horkawicz, Stanislaw;
Lupas, Andrei;
Skowronek, Krzysztof J.;
Bujnicki, Janusz M.

Publication type:

Article