Works matching IS 03051048 AND DT 2012 AND VI 40 AND IP 15

Results: 58

Tracing the path of DNA substrates in active Tetrahymena telomerase holoenzyme complexes: mapping of DNA contact sites in the RNA subunit.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 15, p. 7430, doi. 10.1093/nar/gks416

By:

Goldin, Svetlana;
Kertesz Rosenfeld, Karin;
Manor, Haim

Publication type:

Article

Prospects and limitations of full-text index structures in genome analysis.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 15, p. 6993, doi. 10.1093/nar/gks408

By:

Vyverman, Michaël;
De Baets, Bernard;
Fack, Veerle;
Dawyndt, Peter

Publication type:

Article

The magnitude and colour of noise in genetic negative feedback systems.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 15, p. 7084, doi. 10.1093/nar/gks385

By:

Voliotis, Margaritis;
Bowsher, Clive G.

Publication type:

Article

RNA-dependent regulation of the cell wall stress response.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 15, p. 7507, doi. 10.1093/nar/gks411

By:

Catala, Mathieu;
Aksouh, Leyla;
Abou Elela, Sherif

Publication type:

Article

Repetitive elements and enforced transcriptional repression co-operate to enhance DNA methylation spreading into a promoter CpG-island.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 15, p. 7257, doi. 10.1093/nar/gks429

By:

Zhang, Yan;
Shu, Jingmin;
Si, Jiali;
Shen, Lanlan;
Estecio, Marcos R.H.;
Issa, Jean-Pierre J.

Publication type:

Article

Topological characterization of the DnaA–oriC complex using single-molecule nanomanipuation.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 15, p. 7375, doi. 10.1093/nar/gks371

By:

Zorman, Sylvain;
Seitz, H.;
Sclavi, B.;
Strick, T. R.

Publication type:

Article

Genome-wide analysis of p63 binding sites identifies AP-2 factors as co-regulators of epidermal differentiation.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 15, p. 7190, doi. 10.1093/nar/gks389

By:

McDade, Simon S.;
Henry, Alexandra E.;
Pivato, Geraldine P.;
Kozarewa, Iwanka;
Mitsopoulos, Constantinos;
Fenwick, Kerry;
Assiotis, Ioannis;
Hakas, Jarle;
Zvelebil, Marketa;
Orr, Nicholas;
Lord, Christopher J.;
Patel, Daksha;
Ashworth, Alan;
McCance, Dennis J.

Publication type:

Article

Detection of transcriptional triggers in the dynamics of microbial growth: application to the respiratorily versatile bacterium Shewanella oneidensis.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 15, p. 7132, doi. 10.1093/nar/gks467

By:

Beg, Qasim K.;
Zampieri, Mattia;
Klitgord, Niels;
Collins, Sara B.;
Altafini, Claudio;
Serres, Margrethe H.;
Segrè, Daniel

Publication type:

Article

Mycobacterium smegmatis SftH exemplifies a distinctive clade of superfamily II DNA-dependent ATPases with 3′ to 5′ translocase and helicase activities.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 15, p. 7465, doi. 10.1093/nar/gks417

By:

Yakovleva, Lyudmila;
Shuman, Stewart

Publication type:

Article

Cryptic transcripts from a ubiquitous plasmid origin of replication confound tests for cis-regulatory function.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 15, p. 7280, doi. 10.1093/nar/gks451

By:

Lemp, Nathan A.;
Hiraoka, Kei;
Kasahara, Noriyuki;
Logg, Christopher R.

Publication type:

Article

Myh7b/miR-499 gene expression is transcriptionally regulated by MRFs and Eos.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 15, p. 7303, doi. 10.1093/nar/gks466

By:

Yeung, Fan;
Chung, Eunhee;
Guess, Martin G.;
Bell, Matthew L.;
Leinwand, Leslie A.

Publication type:

Article

Subscriptions.

Published in:: Nucleic Acids Research, 2012, v. 40, n. 15, p. iii, doi. 10.1093/nar/gks121
Publication type:: Article

Nucleic Acids Research.

Published in:: Nucleic Acids Research, 2012, v. 40, n. 15, p. i, doi. 10.1093/nar/gks099
Publication type:: Article

Primer3—new capabilities and interfaces.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 15, p. e115, doi. 10.1093/nar/gks596

By:

Untergasser, Andreas;
Cutcutache, Ioana;
Koressaar, Triinu;
Ye, Jian;
Faircloth, Brant C.;
Remm, Maido;
Rozen, Steven G.

Publication type:

Article

Engineering synthetic TAL effectors with orthogonal target sites.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 15, p. 7584, doi. 10.1093/nar/gks404

By:

Garg, Abhishek;
Lohmueller, Jason J.;
Silver, Pamela A.;
Armel, Thomas Z.

Publication type:

Article

The FleQ protein from Pseudomonas aeruginosa functions as both a repressor and an activator to control gene expression from the pel operon promoter in response to c-di-GMP.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 15, p. 7207, doi. 10.1093/nar/gks384

By:

Baraquet, Claudine;
Murakami, Keiji;
Parsek, Matthew R.;
Harwood, Caroline S.

Publication type:

Article

Dynamic acetylation of lysine-4-trimethylated histone H3 and H3 variant biology in a simple multicellular eukaryote.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 15, p. 7247, doi. 10.1093/nar/gks367

By:

Hsu, Duen-Wei;
Chubb, Jonathan R.;
Muramoto, Tetsuya;
Pears, Catherine J.;
Mahadevan, Louis C.

Publication type:

Article

SAYP and Brahma are important for ‘repressive’ and ‘transient’ Pol II pausing.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 15, p. 7319, doi. 10.1093/nar/gks472

By:

Vorobyeva, Nadezhda E.;
Nikolenko, Julia V.;
Nabirochkina, Elena N.;
Krasnov, Alexey N.;
Shidlovskii, Yulii V.;
Georgieva, Sofia G.

Publication type:

Article

Codon usage bias in prokaryotic pyrimidine-ending codons is associated with the degeneracy of the encoded amino acids.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 15, p. 7074, doi. 10.1093/nar/gks348

By:

Wald, Naama;
Alroy, Maya;
Botzman, Maya;
Margalit, Hanah

Publication type:

Article

RI-1: a chemical inhibitor of RAD51 that disrupts homologous recombination in human cells.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 15, p. 7347, doi. 10.1093/nar/gks353

By:

Budke, Brian;
Logan, Hillary L.;
Kalin, Jay H.;
Zelivianskaia, Anna S.;
Cameron McGuire, William;
Miller, Luke L.;
Stark, Jeremy M.;
Kozikowski, Alan P.;
Bishop, Douglas K.;
Connell, Philip P.

Publication type:

Article

A genetic screen for terminator function in yeast identifies a role for a new functional domain in termination factor Nab3.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 15, p. 7476, doi. 10.1093/nar/gks377

By:

Loya, Travis J.;
O’Rourke, Thomas W.;
Reines, Daniel

Publication type:

Article

Identification of novel NRF2-regulated genes by ChIP-Seq: influence on retinoid X receptor alpha.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 15, p. 7416, doi. 10.1093/nar/gks409

By:

Chorley, Brian N.;
Campbell, Michelle R.;
Wang, Xuting;
Karaca, Mehmet;
Sambandan, Deepa;
Bangura, Fatu;
Xue, Peng;
Pi, Jingbo;
Kleeberger, Steven R.;
Bell, Douglas A.

Publication type:

Article

Active site opening and closure control translocation of multisubunit RNA polymerase.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 15, p. 7442, doi. 10.1093/nar/gks383

By:

Malinen, Anssi M.;
Turtola, Matti;
Parthiban, Marimuthu;
Vainonen, Lioudmila;
Johnson, Mark S.;
Belogurov, Georgiy A.

Publication type:

Article

Iterative capped assembly: rapid and scalable synthesis of repeat-module DNA such as TAL effectors from individual monomers.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 15, p. e117, doi. 10.1093/nar/gks624

By:

Briggs, Adrian W.;
Rios, Xavier;
Chari, Raj;
Yang, Luhan;
Zhang, Feng;
Mali, Prashant;
Church, George M.

Publication type:

Article

Rapid incorporation kinetics and improved fidelity of a novel class of 3′-OH unblocked reversible terminators.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 15, p. 7404, doi. 10.1093/nar/gks330

By:

Gardner, Andrew F.;
Wang, Jinchun;
Wu, Weidong;
Karouby, Jennifer;
Li, Hong;
Stupi, Brian P.;
Jack, William E.;
Hersh, Megan N.;
Metzker, Michael L.

Publication type:

Article

A benchmark for chromatin binding measurements in live cells.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 15, p. e119, doi. 10.1093/nar/gks701

By:

Mazza, Davide;
Abernathy, Alice;
Golob, Nicole;
Morisaki, Tatsuya;
McNally, James G.

Publication type:

Article

Characterization and prediction of the binding site in DNA-binding proteins: improvement of accuracy by combining residue composition, evolutionary conservation and structural parameters.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 15, p. 7150, doi. 10.1093/nar/gks405

By:

Dey, Sucharita;
Pal, Arumay;
Guharoy, Mainak;
Sonavane, Shrihari;
Chakrabarti, Pinak

Publication type:

Article

Thermodynamics of the multi-stage DNA lesion recognition and repair by formamidopyrimidine-DNA glycosylase using pyrrolocytosine fluorescence—stopped-flow pre-steady-state kinetics.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 15, p. 7384, doi. 10.1093/nar/gks423

By:

Kuznetsov, Nikita A.;
Vorobjev, Yuri N.;
Krasnoperov, Lev N.;
Fedorova, Olga S.

Publication type:

Article

A role for chromatin remodellers in replication of damaged DNA.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 15, p. 7393, doi. 10.1093/nar/gks453

By:

Niimi, Atsuko;
Chambers, Anna L.;
Downs, Jessica A.;
Lehmann, Alan R.

Publication type:

Article

A new way of measuring apoptosis by absolute quantitation of inter-nucleosomally fragmented genomic DNA.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 15, p. e113, doi. 10.1093/nar/gks334

By:

Hooker, David J.;
Mobarok, Masqura;
Anderson, Jenny L.;
Rajasuriar, Reena;
Gray, Lachlan R.;
Ellett, Anne M.;
Lewin, Sharon R.;
Gorry, Paul R.;
Cherry, Catherine L.

Publication type:

Article

i-cisTarget: an integrative genomics method for the prediction of regulatory features and cis-regulatory modules.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 15, p. e114, doi. 10.1093/nar/gks543

By:

Herrmann, Carl;
Van de Sande, Bram;
Potier, Delphine;
Aerts, Stein

Publication type:

Article

The evolutionary dynamics of functional modules and the extraordinary plasticity of regulons: the Escherichia coli perspective.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 15, p. 7104, doi. 10.1093/nar/gks443

By:

Moreno-Hagelsieb, Gabriel;
Jokic, Petar

Publication type:

Article

Sequence, structure and functional diversity of PD-(D/E)XK phosphodiesterase superfamily.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 15, p. 7016, doi. 10.1093/nar/gks382

By:

Steczkiewicz, Kamil;
Muszewska, Anna;
Knizewski, Lukasz;
Rychlewski, Leszek;
Ginalski, Krzysztof

Publication type:

Article

A high-throughput next-generation sequencing-based method for detecting the mutational fingerprint of carcinogens.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 15, p. e116, doi. 10.1093/nar/gks610

By:

Besaratinia, Ahmad;
Li, Haiqing;
Yoon, Jae-In;
Zheng, Albert;
Gao, Hanlin;
Tommasi, Stella

Publication type:

Article

Stochastic simulation for the inference of transcriptional control network of yeast cyclins genes.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 15, p. 7096, doi. 10.1093/nar/gks440

By:

Vohradsky, Jiri

Publication type:

Article

Structural bioinformatics of the human spliceosomal proteome.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 15, p. 7046, doi. 10.1093/nar/gks347

By:

Korneta, Iga;
Magnus, Marcin;
Bujnicki, Janusz M.

Publication type:

Article

Quencher-free multiplexed monitoring of DNA reaction circuits.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 15, p. e118, doi. 10.1093/nar/gks621

By:

Padirac, Adrien;
Fujii, Teruo;
Rondelez, Yannick

Publication type:

Article

The testis-specific double bromodomain-containing protein BRDT forms a complex with multiple spliceosome components and is required for mRNA splicing and 3′-UTR truncation in round spermatids.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 15, p. 7162, doi. 10.1093/nar/gks342

By:

Berkovits, Binyamin D.;
Wang, Li;
Guarnieri, Paolo;
Wolgemuth, Debra J.

Publication type:

Article

Cap-dependent translation without base-by-base scanning of an messenger ribonucleic acid.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 15, p. 7541, doi. 10.1093/nar/gks471

By:

Paek, Ki Young;
Park, Sung Mi;
Hong, Ka Young;
Jang, Sung Key

Publication type:

Article

The Lin28 cold-shock domain remodels pre-let-7 microRNA.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 15, p. 7492, doi. 10.1093/nar/gks355

By:

Mayr, Florian;
Schütz, Anja;
Döge, Nadine;
Heinemann, Udo

Publication type:

Article

BIM promoter directly targeted by EBNA3C in polycomb-mediated repression by EBV.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 15, p. 7233, doi. 10.1093/nar/gks391

By:

Paschos, Kostas;
Parker, Gillian A.;
Watanatanasup, Ekularn;
White, Robert E.;
Allday, Martin J.

Publication type:

Article

The recognition domain of the methyl-specific endonuclease McrBC flips out 5-methylcytosine.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 15, p. 7552, doi. 10.1093/nar/gks332

By:

Sukackaite, Rasa;
Grazulis, Saulius;
Tamulaitis, Gintautas;
Siksnys, Virginijus

Publication type:

Article

Comparative genomic and proteomic analyses of PE/PPE multigene family of Mycobacterium tuberculosis H37Rv and H37Ra reveal novel and interesting differences with implications in virulence.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 15, p. 7113, doi. 10.1093/nar/gks465

By:

Kohli, Sakshi;
Singh, Yadvir;
Sharma, Khushbu;
Mittal, Aditya;
Ehtesham, Nasreen Z.;
Hasnain, Seyed E.

Publication type:

Article

Linear motifs confer functional diversity onto splice variants.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 15, p. 7123, doi. 10.1093/nar/gks442

By:

Weatheritt, Robert J.;
Davey, Norman E.;
Gibson, Toby J.

Publication type:

Article

CRL4–DDB1–VPRBP ubiquitin ligase mediates the stress triggered proteolysis of Mcm10.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 15, p. 7332, doi. 10.1093/nar/gks366

By:

Kaur, Manpreet;
Khan, Md. Muntaz;
Kar, Ananya;
Sharma, Aparna;
Saxena, Sandeep

Publication type:

Article

Measurements of DNA-loop formation via Cre-mediated recombination.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 15, p. 7452, doi. 10.1093/nar/gks430

By:

Shoura, Massa J.;
Vetcher, Alexandre A.;
Giovan, Stefan M.;
Bardai, Farah;
Bharadwaj, Anusha;
Kesinger, Matthew R.;
Levene, Stephen D.

Publication type:

Article

Crystal structure and mechanism of action of the N6-methyladenine-dependent type IIM restriction endonuclease R.DpnI.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 15, p. 7563, doi. 10.1093/nar/gks428

By:

Siwek, Wojciech;
Czapinska, Honorata;
Bochtler, Matthias;
Bujnicki, Janusz M.;
Skowronek, Krzysztof

Publication type:

Article

Context-dependent conservation of DNA methyltransferases in bacteria.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 15, p. 7066, doi. 10.1093/nar/gks390

By:

Seshasayee, Aswin Sai Narain;
Singh, Parul;
Krishna, Sandeep

Publication type:

Article

Endogenous formation and repair of oxidatively induced G[8-5 m]T intrastrand cross-link lesion.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 15, p. 7368, doi. 10.1093/nar/gks357

By:

Wang, Jin;
Cao, Huachuan;
You, Changjun;
Yuan, Bifeng;
Bahde, Ralf;
Gupta, Sanjeev;
Nishigori, Chikako;
Niedernhofer, Laura J.;
Brooks, Philip J.;
Wang, Yinsheng

Publication type:

Article

A small ribozyme with dual-site kinase activity.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 15, p. 7528, doi. 10.1093/nar/gks356

By:

Biondi, Elisa;
Maxwell, Adam W.R.;
Burke, Donald H.

Publication type:

Article