Works matching IS 03051048 AND DT 2012 AND VI 40 AND IP 14

Results: 59

OLE RNA protects extremophilic bacteria from alcohol toxicity.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 14, p. 6898, doi. 10.1093/nar/gks352

By:

Wallace, Jason G.;
Zhou, Zhiyuan;
Breaker, Ronald R.

Publication type:

Article

Solution-state structure of an intramolecular G-quadruplex with propeller, diagonal and edgewise loops.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 14, p. 6946

By:

Marušič, Maja;
Šket, Primož;
Bauer, Lubos;
Viglasky, Viktor;
Plavec, Janez

Publication type:

Article

KH domains with impaired nucleic acid binding as a tool for functional analysis.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 14, p. 6873, doi. 10.1093/nar/gks368

By:

Hollingworth, David;
Candel, Adela M.;
Nicastro, Giuseppe;
Martin, Stephen R.;
Briata, Paola;
Gherzi, Roberto;
Ramos, Andres

Publication type:

Article

Postnatal development- and age-related changes in DNA-methylation patterns in the human genome.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 14, p. 6477, doi. 10.1093/nar/gks312

By:

Salpea, Paraskevi;
Russanova, Valya R.;
Hirai, Tazuko H.;
Sourlingas, Thomae G.;
Sekeri-Pataryas, Kalliope E.;
Romero, Roberto;
Epstein, Jonathan;
Howard, Bruce H.

Publication type:

Article

Sequence and expression analysis of gaps in human chromosome 20.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 14, p. 6660, doi. 10.1093/nar/gks302

By:

Minocherhomji, Sheroy;
Seemann, Stefan;
Mang, Yuan;
El-schich, Zahra;
Bak, Mads;
Hansen, Claus;
Papadopoulos, Nickolas;
Josefsen, Knud;
Nielsen, Henrik;
Gorodkin, Jan;
Tommerup, Niels;
Silahtaroglu, Asli

Publication type:

Article

Deregulated telomere transcription causes replication-dependent telomere shortening and promotes cellular senescence.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 14, p. 6649, doi. 10.1093/nar/gks358

By:

Maicher, André;
Kastner, Lisa;
Dees, Martina;
Luke, Brian

Publication type:

Article

Biochemical analyses indicate that binding and cleavage specificities define the ordered processing of human Okazaki fragments by Dna2 and FEN1.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 14, p. 6774, doi. 10.1093/nar/gks388

By:

Gloor, Jason W.;
Balakrishnan, Lata;
Campbell, Judith L.;
Bambara, Robert A.

Publication type:

Article

A novel source for miR-21 expression through the alternative polyadenylation of VMP1 gene transcripts.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 14, p. 6821, doi. 10.1093/nar/gks308

By:

Ribas, Judit;
Ni, Xiaohua;
Castanares, Mark;
Liu, Minzhi M.;
Esopi, David;
Yegnasubramanian, Srinivasan;
Rodriguez, Ronald;
Mendell, Joshua T.;
Lupold, Shawn E.

Publication type:

Article

Homologous recombination repairs secondary replication induced DNA double-strand breaks after ionizing radiation.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 14, p. 6585, doi. 10.1093/nar/gks315

By:

Groth, Petra;
Orta, Manuel Luís;
Elvers, Ingegerd;
Majumder, Muntasir Mamun;
Lagerqvist, Anne;
Helleday, Thomas

Publication type:

Article

Structural study of MCPIP1 N-terminal conserved domain reveals a PIN-like RNase.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 14, p. 6957

By:

Xu, Jiwei;
Peng, Wei;
Sun, Yao;
Wang, Xiangxi;
Xu, Yihui;
Li, Xuemei;
Gao, Guangxia;
Rao, Zihe

Publication type:

Article

TFIIS is required for the balanced expression of the genes encoding ribosomal components under transcriptional stress.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 14, p. 6508

By:

Gómez-Herreros, Fernando;
de Miguel-Jiménez, Lola;
Morillo-Huesca, Macarena;
Delgado-Ramos, Lidia;
Muñoz-Centeno, María C.;
Chávez, Sebastián

Publication type:

Article

A twist in the tail: SHAPE mapping of long-range interactions and structural rearrangements of RNA elements involved in HCV replication.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 14, p. 6908, doi. 10.1093/nar/gks370

By:

Tuplin, Andrew;
Struthers, Madeleine;
Simmonds, Peter;
Evans, David J.

Publication type:

Article

Evidence that the Upf1-related molecular motor scans the 3′-UTR to ensure mRNA integrity.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 14, p. 6887, doi. 10.1093/nar/gks344

By:

Shigeoka, Toshiaki;
Kato, Sayaka;
Kawaichi, Masashi;
Ishida, Yasumasa

Publication type:

Article

A flexible integrative approach based on random forest improves prediction of transcription factor binding sites.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 14, p. e106, doi. 10.1093/nar/gks283

By:

Hooghe, Bart;
Broos, Stefan;
van Roy, Frans;
De Bleser, Pieter

Publication type:

Article

Rad51 presynaptic filament stabilization function of the mouse Swi5–Sfr1 heterodimeric complex.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 14, p. 6558, doi. 10.1093/nar/gks305

By:

Tsai, Shang-Pu;
Su, Guan-Chin;
Lin, Sheng-Wei;
Chung, Chan-I.;
Xue, Xiaoyu;
Dunlop, Myun Hwa;
Akamatsu, Yufuko;
Jasin, Maria;
Sung, Patrick;
Chi, Peter

Publication type:

Article

Computational inference of mRNA stability from histone modification and transcriptome profiles.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 14, p. 6414, doi. 10.1093/nar/gks304

By:

Wang, Chengyang;
Tian, Rui;
Zhao, Qian;
Xu, Han;
Meyer, Clifford A.;
Li, Cheng;
Zhang, Yong;
Liu, X. Shirley

Publication type:

Article

Dissociation from DNA of Type III Restriction–Modification enzymes during helicase-dependent motion and following endonuclease activity.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 14, p. 6752

By:

Tóth, Júlia;
van Aelst, Kara;
Salmons, Hannah;
Szczelkun, Mark D.

Publication type:

Article

The structure of the C-terminal domain of the largest editosome interaction protein and its role in promoting RNA binding by RNA-editing ligase L2.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 14, p. 6966, doi. 10.1093/nar/gks369

By:

Park, Young-Jun;
Budiarto, Tanya;
Wu, Meiting;
Pardon, Els;
Steyaert, Jan;
Hol, Wim G. J.

Publication type:

Article

Emx2 is a dose-dependent negative regulator of Sox2 telencephalic enhancers.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 14, p. 6461, doi. 10.1093/nar/gks295

By:

Mariani, J.;
Favaro, R.;
Lancini, C.;
Vaccari, G.;
Ferri, A. L.;
Bertolini, J.;
Tonoli, D.;
Latorre, E.;
Caccia, R.;
Ronchi, A.;
Ottolenghi, S.;
Miyagi, S.;
Okuda, A.;
Zappavigna, V.;
Nicolis, S. K.

Publication type:

Article

Nucleic Acids Research - Editorial Board.

Published in:: Nucleic Acids Research, 2012, v. 40, n. 14, p. ii, doi. 10.1093/nar/gks076
Publication type:: Article

The transition in spliceosome assembly from complex E to complex A purges surplus U1 snRNPs from alternative splice sites.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 14, p. 6850, doi. 10.1093/nar/gks322

By:

Hodson, Mark J.;
Hudson, Andrew J.;
Cherny, Dmitry;
Eperon, Ian C.

Publication type:

Article

An analysis of substitution, deletion and insertion mutations in cancer genes.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 14, p. 6401, doi. 10.1093/nar/gks290

By:

Iengar, Prathima

Publication type:

Article

The SNORD115 (H/MBII-52) and SNORD116 (H/MBII-85) gene clusters at the imprinted Prader–Willi locus generate canonical box C/D snoRNAs.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 14, p. 6800, doi. 10.1093/nar/gks321

By:

Bortolin-Cavaillé, Marie-Line;
Cavaillé, Jérôme

Publication type:

Article

Emerging functional and mechanistic paradigms of mammalian long non-coding RNAs.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 14, p. 6391, doi. 10.1093/nar/gks296

By:

Moran, Victoria A.;
Perera, Ranjan J.;
Khalil, Ahmad M.

Publication type:

Article

Non-specific binding of Na+ and Mg2+ to RNA determined by force spectroscopy methods.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 14, p. 6922, doi. 10.1093/nar/gks289

By:

Bizarro, C. V.;
Alemany, A.;
Ritort, F.

Publication type:

Article

A highly fluorescent DNA toolkit: synthesis and properties of oligonucleotides containing new Cy3, Cy5 and Cy3B monomers.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 14, p. e108, doi. 10.1093/nar/gks303

By:

Hall, Lucy M.;
Gerowska, Marta;
Brown, Tom

Publication type:

Article

Targeted silencing of the oncogenic transcription factor SOX2 in breast cancer.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 14, p. 6725, doi. 10.1093/nar/gks360

By:

Stolzenburg, Sabine;
Rots, Marianne G.;
Beltran, Adriana S.;
Rivenbark, Ashley G.;
Yuan, Xinni;
Qian, Haili;
Strahl, Brian D.;
Blancafort, Pilar

Publication type:

Article

β-Catenin recognizes a specific RNA motif in the cyclooxygenase-2 mRNA 3′-UTR and interacts with HuR in colon cancer cells.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 14, p. 6863, doi. 10.1093/nar/gks331

By:

Kim, Inae;
Kwak, Hoyun;
Lee, Hee Kyu;
Hyun, Soonsil;
Jeong, Sunjoo

Publication type:

Article

Non-specific protein–DNA interactions control I-CreI target binding and cleavage.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 14, p. 6936, doi. 10.1093/nar/gks320

By:

Molina, Rafael;
Redondo, Pilar;
Stella, Stefano;
Marenchino, Marco;
D’Abramo, Marco;
Gervasio, Francesco Luigi;
Charles Epinat, Jean;
Valton, Julien;
Grizot, Silvestre;
Duchateau, Phillipe;
Prieto, Jesús;
Montoya, Guillermo

Publication type:

Article

Epstein–Barr virus protein EB2 stimulates cytoplasmic mRNA accumulation by counteracting the deleterious effects of SRp20 on viral mRNAs.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 14, p. 6834, doi. 10.1093/nar/gks319

By:

Juillard, Franceline;
Bazot, Quentin;
Mure, Fabrice;
Tafforeau, Lionel;
Macri, Christophe;
Rabourdin-Combe, Chantal;
Lotteau, Vincent;
Manet, Evelyne;
Gruffat, Henri

Publication type:

Article

Evidence that RNA polymerase II and not TFIIB is responsible for the difference in transcription initiation patterns between Saccharomyces cerevisiae and Schizosaccharomyces pombe.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 14, p. 6495, doi. 10.1093/nar/gks323

By:

Yang, Chen;
Ponticelli, Alfred S.

Publication type:

Article

Argonaute identity defines the length of mature mammalian microRNAs.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 14, p. 6808, doi. 10.1093/nar/gks293

By:

Juvvuna, Prasanna Kumar;
Khandelia, Piyush;
Lee, Li Ming;
Makeyev, Eugene V.

Publication type:

Article

The DNA dioxygenase ALKBH2 protects Arabidopsis thaliana against methylation damage.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 14, p. 6620, doi. 10.1093/nar/gks327

By:

Meza, Trine J.;
Moen, Marivi N.;
Vågbø, Cathrine B.;
Krokan, Hans E.;
Klungland, Arne;
Grini, Paul E.;
Falnes, Pål Ø.

Publication type:

Article

Impact of PNKP mutations associated with microcephaly, seizures and developmental delay on enzyme activity and DNA strand break repair.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 14, p. 6608, doi. 10.1093/nar/gks318

By:

Reynolds, John J.;
Walker, Alexandra K.;
Gilmore, Edward C.;
Walsh, Christopher A.;
Caldecott, Keith W.

Publication type:

Article

Nucleic Acids Research.

Published in:: Nucleic Acids Research, 2012, v. 40, n. 14, p. i, doi. 10.1093/nar/gks098
Publication type:: Article

Automated 3D structure composition for large RNAs.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 14, p. e112, doi. 10.1093/nar/gks339

By:

Popenda, Mariusz;
Szachniuk, Marta;
Antczak, Maciej;
Purzycka, Katarzyna J.;
Lukasiak, Piotr;
Bartol, Natalia;
Blazewicz, Jacek;
Adamiak, Ryszard W.

Publication type:

Article

Identification of high-confidence somatic mutations in whole genome sequence of formalin-fixed breast cancer specimens.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 14, p. e107, doi. 10.1093/nar/gks299

By:

Yost, Shawn E.;
Smith, Erin N.;
Schwab, Richard B.;
Bao, Lei;
Jung, HyunChul;
Wang, Xiaoyun;
Voest, Emile;
Pierce, John P.;
Messer, Karen;
Parker, Barbara A.;
Harismendy, Olivier;
Frazer, Kelly A.

Publication type:

Article

Rapid identification of high-confidence taxonomic assignments for metagenomic data.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 14, p. e111, doi. 10.1093/nar/gks335

By:

MacDonald, Norman J.;
Parks, Donovan H.;
Beiko, Robert G.

Publication type:

Article

Genome-wide analysis of EGR2/SOX10 binding in myelinating peripheral nerve.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 14, p. 6449, doi. 10.1093/nar/gks313

By:

Srinivasan, Rajini;
Sun, Guannan;
Keles, Sunduz;
Jones, Erin A.;
Jang, Sung-Wook;
Krueger, Courtney;
Moran, John J.;
Svaren, John

Publication type:

Article

Interactions between BRCA2 and RAD51 for promoting homologous recombination in Leishmania infantum.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 14, p. 6570, doi. 10.1093/nar/gks306

By:

Genois, Marie-Michelle;
Mukherjee, Angana;
Ubeda, Jean-Michel;
Buisson, Rémi;
Paquet, Eric;
Roy, Gaétan;
Plourde, Marie;
Coulombe, Yan;
Ouellette, Marc;
Masson, Jean-Yves

Publication type:

Article

Chimeric piggyBac transposases for genomic targeting in human cells.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 14, p. 6978, doi. 10.1093/nar/gks309

By:

Owens, Jesse B.;
Urschitz, Johann;
Stoytchev, Ilko;
Dang, Nong C.;
Stoytcheva, Zoia;
Belcaid, Mahdi;
Maragathavally, Kommineni J.;
Coates, Craig J.;
Segal, David J.;
Moisyadi, Stefan

Publication type:

Article

Shape-based alignment of genomic landscapes in multi-scale resolution.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 14, p. 6435, doi. 10.1093/nar/gks354

By:

Ashida, Hiroki;
Asai, Kiyoshi;
Hamada, Michiaki

Publication type:

Article

A rapid method for assessing the RNA-binding potential of a protein.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 14, p. e105, doi. 10.1093/nar/gks285

By:

Bendak, K.;
Loughlin, F.E.;
Cheung, V.;
O’Connell, M.R.;
Crossley, M.;
Mackay, J.P.

Publication type:

Article

Mycobacterium tuberculosis RbpA protein is a new type of transcriptional activator that stabilizes the σA-containing RNA polymerase holoenzyme.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 14, p. 6547, doi. 10.1093/nar/gks346

By:

Hu, Yangbo;
Morichaud, Zakia;
Chen, Shiyun;
Leonetti, Jean-Paul;
Brodolin, Konstantin

Publication type:

Article

Retargeting transposon insertions by the adeno-associated virus Rep protein.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 14, p. 6693, doi. 10.1093/nar/gks317

By:

Ammar, Ismahen;
Gogol-Döring, Andreas;
Miskey, Csaba;
Chen, Wei;
Cathomen, Toni;
Izsvák, Zsuzsanna;
Ivics, Zoltán

Publication type:

Article

Extensive terminal and asymmetric processing of small RNAs from rRNAs, snoRNAs, snRNAs, and tRNAs.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 14, p. 6787, doi. 10.1093/nar/gks307

By:

Li, Zhihua;
Ender, Christine;
Meister, Gunter;
Moore, Patrick S.;
Chang, Yuan;
John, Bino

Publication type:

Article

Characterization of a novel DNA polymerase activity assay enabling sensitive, quantitative and universal detection of viable microbes.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 14, p. e109, doi. 10.1093/nar/gks316

By:

Zweitzig, Daniel R.;
Riccardello, Nichol M.;
Sodowich, Bruce I.;
O’Hara, S. Mark

Publication type:

Article

Negative regulation of miR-145 by C/EBP-β through the Akt pathway in cancer cells.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 14, p. 6683, doi. 10.1093/nar/gks324

By:

Sachdeva, Mohit;
Liu, Qian;
Cao, Julia;
Lu, Zhaohui;
Mo, Yin-Yuan

Publication type:

Article

Programmable sequence-specific click-labeling of RNA using archaeal box C/D RNP methyltransferases.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 14, p. 6765

By:

Tomkuvienė, Miglė;
Clouet-d’Orval, Béatrice;
Černiauskas, Ignas;
Weinhold, Elmar;
Klimašauskas, Saulius

Publication type:

Article

Combinatorial targeting of ribbon–helix–helix artificial transcription factors to chimeric recognition sites.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 14, p. 6673, doi. 10.1093/nar/gks314

By:

Zampini, Massimiliano;
Hayes, Finbarr

Publication type:

Article