Works matching IS 03051048 AND DT 2012 AND VI 40 AND IP 13

Results: 119

Comparative analysis of human and mouse expression data illuminates tissue-specific evolutionary patterns of miRNAs.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 13, p. 5890, doi. 10.1093/nar/gks279

By:

Roux, Julien;
Gonzàlez-Porta, Mar;
Robinson-Rechavi, Marc

Publication type:

Article

The chromatin remodeling and mRNA splicing functions of the Brahma (SWI/SNF) complex are mediated by the SNR1/SNF5 regulatory subunit.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 13, p. 5975, doi. 10.1093/nar/gks288

By:

Zraly, Claudia B.;
Dingwall, Andrew K.

Publication type:

Article

Replication regulation of Vibrio cholerae chromosome II involves initiator binding to the origin both as monomer and as dimer.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 13, p. 6026, doi. 10.1093/nar/gks260

By:

Jha, Jyoti K.;
Demarre, Gaëlle;
Venkova-Canova, Tatiana;
Chattoraj, Dhruba K.

Publication type:

Article

Mitochondrial nucleoid interacting proteins support mitochondrial protein synthesis.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 13, p. 6109, doi. 10.1093/nar/gks266

By:

He, J.;
Cooper, H. M.;
Reyes, A.;
Di Re, M.;
Sembongi, H.;
Litwin, T. R.;
Gao, J.;
Neuman, K. C.;
Fearnley, I. M.;
Spinazzola, A.;
Walker, J. E.;
Holt, I. J.

Publication type:

Article

Critical amino acids in Escherichia coli UmuC responsible for sugar discrimination and base-substitution fidelity.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 13, p. 6144, doi. 10.1093/nar/gks233

By:

Vaisman, Alexandra;
Kuban, Wojciech;
McDonald, John P.;
Karata, Kiyonobu;
Yang, Wei;
Goodman, Myron F.;
Woodgate, Roger

Publication type:

Article

Phase variable genes of Campylobacter jejuni exhibit high mutation rates and specific mutational patterns but mutability is not the major determinant of population structure during host colonization.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 13, p. 5876, doi. 10.1093/nar/gks246

By:

Bayliss, Christopher D.;
Bidmos, Fadil A.;
Anjum, Awais;
Manchev, Vladimir T.;
Richards, Rebecca L .;
Grossier, Jean-Philippe;
Wooldridge, Karl G.;
Ketley, Julian M.;
Barrow, Paul A.;
Jones, Michael A.;
Tretyakov, Michael V.

Publication type:

Article

From dynamic combinatorial ‘hit’ to lead: in vitro and in vivo activity of compounds targeting the pathogenic RNAs that cause myotonic dystrophy.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 13, p. 6380, doi. 10.1093/nar/gks298

By:

Ofori, Leslie O.;
Hoskins, Jason;
Nakamori, Masayuki;
Thornton, Charles A.;
Miller, Benjamin L.

Publication type:

Article

Homologous recombination and its regulation.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 13, p. 5795, doi. 10.1093/nar/gks270

By:

Krejci, Lumir;
Altmannova, Veronika;
Spirek, Mario;
Zhao, Xiaolan

Publication type:

Article

Combining H/D exchange mass spectroscopy and computational docking reveals extended DNA-binding surface on uracil-DNA glycosylase.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 13, p. 6070, doi. 10.1093/nar/gks291

By:

Roberts, Victoria A.;
Pique, Michael E.;
Hsu, Simon;
Li, Sheng;
Slupphaug, Geir;
Rambo, Robert P.;
Jamison, Jonathan W.;
Liu, Tong;
Lee, Jun H.;
Tainer, John A.;
Ten Eyck, Lynn F.;
Woods, Virgil L.

Publication type:

Article

Collaborative coupling between polymerase and helicase for leading-strand synthesis.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 13, p. 6187, doi. 10.1093/nar/gks254

By:

Manosas, Maria;
Spiering, Michelle M.;
Ding, Fangyuan;
Croquette, Vincent;
Benkovic, Stephen J.

Publication type:

Article

Real-time monitoring of RAG-catalyzed DNA cleavage unveils dynamic changes in coding end association with the coding end complex.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 13, p. 6082, doi. 10.1093/nar/gks255

By:

Wang, Guannan;
Dhar, Kajari;
Swanson, Patrick C.;
Levitus, Marcia;
Chang, Yung

Publication type:

Article

H2A.Z.2.2 is an alternatively spliced histone H2A.Z variant that causes severe nucleosome destabilization.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 13, p. 5951, doi. 10.1093/nar/gks267

By:

Bönisch, Clemens;
Schneider, Katrin;
Pünzeler, Sebastian;
Wiedemann, Sonja M.;
Bielmeier, Christina;
Bocola, Marco;
Eberl, H. Christian;
Kuegel, Wolfgang;
Neumann, Jürgen;
Kremmer, Elisabeth;
Leonhardt, Heinrich;
Mann, Matthias;
Michaelis, Jens;
Schermelleh, Lothar;
Hake, Sandra B.

Publication type:

Article

Analysis of C. elegans intestinal gene expression and polyadenylation by fluorescence-activated nuclei sorting and 3′-end-seq.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 13, p. 6304, doi. 10.1093/nar/gks282

By:

Haenni, Simon;
Ji, Zhe;
Hoque, Mainul;
Rust, Nigel;
Sharpe, Helen;
Eberhard, Ralf;
Browne, Cathy;
Hengartner, Michael O.;
Mellor, Jane;
Tian, Bin;
Furger, André

Publication type:

Article

Identification of differentially expressed non-coding RNAs in embryonic stem cell neural differentiation.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 13, p. 6001, doi. 10.1093/nar/gks311

By:

Skreka, Konstantinia;
Schafferer, Simon;
Nat, Irina-Roxanna;
Zywicki, Marek;
Salti, Ahmad;
Apostolova, Galina;
Griehl, Matthias;
Rederstorff, Mathieu;
Dechant, Georg;
Hüttenhofer, Alexander

Publication type:

Article

Yields of damage to C4′ deoxyribose and to pyrimidines in pUC18 by the direct effect of ionizing radiation.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 13, p. 6060, doi. 10.1093/nar/gks271

By:

Peoples, Anita R.;
Lee, Jane;
Weinfeld, Michael;
Milligan, Jamie R.;
Bernhard, William A.

Publication type:

Article

A mostly traditional approach improves alignment of bisulfite-converted DNA.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 13, p. e100, doi. 10.1093/nar/gks275

By:

Frith, Martin C.;
Mori, Ryota;
Asai, Kiyoshi

Publication type:

Article

Transient structure and dynamics in the disordered c-Myc transactivation domain affect Bin1 binding.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 13, p. 6353, doi. 10.1093/nar/gks263

By:

Andresen, Cecilia;
Helander, Sara;
Lemak, Alexander;
Farès, Christophe;
Csizmok, Veronika;
Carlsson, Jonas;
Penn, Linda Z.;
Forman-Kay, Julie D.;
Arrowsmith, Cheryl H.;
Lundström, Patrik;
Sunnerhagen, Maria

Publication type:

Article

Nucleic Acids Research.

Published in:: Nucleic Acids Research, 2012, v. 40, n. 13, p. i, doi. 10.1093/nar/gks097
Publication type:: Article

Mutually exclusive splicing regulates the Nav 1.6 sodium channel function through a combinatorial mechanism that involves three distinct splicing regulatory elements and their ligands.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 13, p. 6255, doi. 10.1093/nar/gks249

By:

Zubović, Lorena;
Baralle, Marco;
Baralle, Francisco E.

Publication type:

Article

Sequencing of RDR6-dependent double-stranded RNAs reveals novel features of plant siRNA biogenesis.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 13, p. 6241, doi. 10.1093/nar/gks242

By:

Rajeswaran, Rajendran;
Aregger, Michael;
Zvereva, Anna S.;
Borah, Basanta K.;
Gubaeva, Ekaterina G.;
Pooggin, Mikhail M.

Publication type:

Article

Estrogen receptor-α recruits P-TEFb to overcome transcriptional pausing in intron 1 of the MYB gene.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 13, p. 5988, doi. 10.1093/nar/gks286

By:

Mitra, Partha;
Pereira, Lloyd A.;
Drabsch, Yvette;
Ramsay, Robert G.;
Gonda, Thomas J.

Publication type:

Article

Mammalian HCA66 protein is required for both ribosome synthesis and centriole duplication.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 13, p. 6270, doi. 10.1093/nar/gks234

By:

Bonnart, Chrystelle;
Gérus, Marie;
Hoareau-Aveilla, Coralie;
Kiss, Tamás;
Caizergues-Ferrer, Michèle;
Henry, Yves;
Henras, Anthony K.

Publication type:

Article

Chromosomal context and epigenetic mechanisms control the efficacy of genome editing by rare-cutting designer endonucleases.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 13, p. 6367, doi. 10.1093/nar/gks268

By:

Daboussi, Fayza;
Zaslavskiy, Mikhail;
Poirot, Laurent;
Loperfido, Mariana;
Gouble, Agnès;
Guyot, Valerie;
Leduc, Sophie;
Galetto, Roman;
Grizot, Sylvestre;
Oficjalska, Danusia;
Perez, Christophe;
Delacôte, Fabien;
Dupuy, Aurélie;
Chion-Sotinel, Isabelle;
Le Clerre, Diane;
Lebuhotel, Céline;
Danos, Olivier;
Lemaire, Frédéric;
Oussedik, Kahina;
Cédrone, Frédéric

Publication type:

Article

The eukaryotic initiation factor eIF4H facilitates loop-binding, repetitive RNA unwinding by the eIF4A DEAD-box helicase.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 13, p. 6199, doi. 10.1093/nar/gks278

By:

Sun, Yingjie;
Atas, Evrim;
Lindqvist, Lisa;
Sonenberg, Nahum;
Pelletier, Jerry;
Meller, Amit

Publication type:

Article

The mechanics behind DNA sequence-dependent properties of the nucleosome.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 13, p. 6338, doi. 10.1093/nar/gks261

By:

Chua, Eugene Y. D.;
Vasudevan, Dileep;
Davey, Gabriela E.;
Wu, Bin;
Davey, Curt A.

Publication type:

Article

Buffering and proteolysis are induced by segmental monosomy in Drosophila melanogaster.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 13, p. 5926, doi. 10.1093/nar/gks245

By:

Lundberg, Lina E.;
Figueiredo, Margarida L. A.;
Stenberg, Per;
Larsson, Jan

Publication type:

Article

PAREsnip: a tool for rapid genome-wide discovery of small RNA/target interactions evidenced through degradome sequencing.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 13, p. e103, doi. 10.1093/nar/gks277

By:

Folkes, Leighton;
Moxon, Simon;
Woolfenden, Hugh C.;
Stocks, Matthew B.;
Szittya, Gyorgy;
Dalmay, Tamas;
Moulton, Vincent

Publication type:

Article

Evolutionary and genetic analyses of mitochondrial translation initiation factors identify the missing mitochondrial IF3 in S. cerevisiae.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 13, p. 6122, doi. 10.1093/nar/gks272

By:

Atkinson, Gemma C.;
Kuzmenko, Anton;
Kamenski, Piotr;
Vysokikh, Mikhail Y.;
Lakunina, Valentina;
Tankov, Stoyan;
Smirnova, Ekaterina;
Soosaar, Aksel;
Tenson, Tanel;
Hauryliuk, Vasili

Publication type:

Article

Deep annotation of mouse iso-miR and iso-moR variation.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 13, p. 5864, doi. 10.1093/nar/gks247

By:

Zhou, Hongjun;
Arcila, Mary Luz;
Li, Zhonghan;
Lee, Eun Joo;
Henzler, Christine;
Liu, Jingya;
Rana, Tariq M.;
Kosik, Kenneth S.

Publication type:

Article

Inference of modules associated to eQTLs.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 13, p. e98, doi. 10.1093/nar/gks269

By:

Kreimer, Anat;
Litvin, Oren;
Hao, Ke;
Molony, Cliona;
Pe’er, Dana;
Pe'er, Itsik

Publication type:

Article

Efficient motif search in ranked lists and applications to variable gap motifs.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 13, p. 5832, doi. 10.1093/nar/gks206

By:

Leibovich, Limor;
Yakhini, Zohar

Publication type:

Article

Nucleic Acids Research - Editorial Board.

Published in:: Nucleic Acids Research, 2012, v. 40, n. 13, p. ii, doi. 10.1093/nar/gks075
Publication type:: Article

Interaction between Escherichia coli DNA polymerase IV and single-stranded DNA-binding protein is required for DNA synthesis on SSB-coated DNA.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 13, p. 6039, doi. 10.1093/nar/gks264

By:

Furukohri, Asako;
Nishikawa, Yoshito;
Tatsumi Akiyama, Masahiro;
Maki, Hisaji

Publication type:

Article

Role of SUMO modification of human PCNA at stalled replication fork.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 13, p. 6049, doi. 10.1093/nar/gks256

By:

Gali, Himabindu;
Juhasz, Szilvia;
Morocz, Monika;
Hajdu, Ildiko;
Fatyol, Karoly;
Szukacsov, Valeria;
Burkovics, Peter;
Haracska, Lajos

Publication type:

Article

TricycloDNA-modified oligo-2′-deoxyribonucleotides reduce scavenger receptor B1 mRNA in hepatic and extra-hepatic tissues—a comparative study of oligonucleotide length, design and chemistry.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 13, p. 6135, doi. 10.1093/nar/gks273

By:

Murray, Sue;
Ittig, Damian;
Koller, Erich;
Berdeja, Andres;
Chappell, Alfred;
Prakash, Thazha P.;
Norrbom, Michaela;
Swayze, Eric E.;
Leumann, Christian J.;
Seth, Punit P.

Publication type:

Article

Fast production of homogeneous recombinant RNA—towards large-scale production of RNA.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 13, p. e102, doi. 10.1093/nar/gks292

By:

Nelissen, Frank H.T.;
Leunissen, Elizabeth H.P.;
van de Laar, Linda;
Tessari, Marco;
Heus, Hans A.;
Wijmenga, Sybren S.

Publication type:

Article

Identification of allele-specific alternative mRNA processing via transcriptome sequencing.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 13, p. e104, doi. 10.1093/nar/gks280

By:

Li, Gang;
Bahn, Jae Hoon;
Lee, Jae-Hyung;
Peng, Guangdun;
Chen, Zugen;
Nelson, Stanley F.;
Xiao, Xinshu

Publication type:

Article

siRNAs targeted to certain polyadenylation sites promote specific, RISC-independent degradation of messenger RNAs.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 13, p. 6223, doi. 10.1093/nar/gks239

By:

Vickers, Timothy A.;
Crooke, Stanley T.

Publication type:

Article

Germline ablation of SMUG1 DNA glycosylase causes loss of 5-hydroxymethyluracil- and UNG-backup uracil-excision activities and increases cancer predisposition of Ung−/−Msh2−/− mice.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 13, p. 6016, doi. 10.1093/nar/gks259

By:

Kemmerich, Kristin;
Dingler, Felix A.;
Rada, Cristina;
Neuberger, Michael S.

Publication type:

Article

The HTLV-1-encoded protein HBZ directly inhibits the acetyl transferase activity of p300/CBP.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 13, p. 5910, doi. 10.1093/nar/gks244

By:

Wurm, Torsten;
Wright, Diana G.;
Polakowski, Nicholas;
Mesnard, Jean-Michel;
Lemasson, Isabelle

Publication type:

Article

Human C4orf14 interacts with the mitochondrial nucleoid and is involved in the biogenesis of the small mitochondrial ribosomal subunit.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 13, p. 6097, doi. 10.1093/nar/gks257

By:

He, J.;
Cooper, H. M.;
Reyes, A.;
Di Re, M.;
Kazak, L.;
Wood, S. R.;
Mao, C. C.;
Fearnley, I. M.;
Walker, J. E.;
Holt, I. J.

Publication type:

Article

Subscriptions.

Published in:: Nucleic Acids Research, 2012, v. 40, n. 13, p. iii, doi. 10.1093/nar/gks119
Publication type:: Article

Genome-wide polycomb target gene prediction in Drosophila melanogaster.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 13, p. 5848, doi. 10.1093/nar/gks209

By:

Zeng, Jia;
Kirk, Brian D.;
Gou, Yufeng;
Wang, Qinghua;
Ma, Jianpeng

Publication type:

Article

Identification and classification of bacterial Type III toxin–antitoxin systems encoded in chromosomal and plasmid genomes.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 13, p. 6158, doi. 10.1093/nar/gks231

By:

Blower, Tim R.;
Short, Francesca L.;
Rao, Feng;
Mizuguchi, Kenji;
Pei, Xue Y.;
Fineran, Peter C.;
Luisi, Ben F.;
Salmond, George P. C.

Publication type:

Article

Interactions between DNA, transcriptional regulator Dreb2a and the Med25 mediator subunit from Arabidopsis thaliana involve conformational changes.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 13, p. 5938, doi. 10.1093/nar/gks265

By:

Blomberg, Jeanette;
Aguilar, Ximena;
Brännström, Kristoffer;
Rautio, Linn;
Olofsson, Anders;
Wittung-Stafshede, Pernilla;
Björklund, Stefan

Publication type:

Article

Genome-wide profiles of H2AX and γ-H2AX differentiate endogenous and exogenous DNA damage hotspots in human cells.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 13, p. 5965, doi. 10.1093/nar/gks287

By:

Seo, Jungmin;
Kim, Sang Cheol;
Lee, Heun-Sik;
Kim, Jung Kyu;
Shon, Hye Jin;
Salleh, Nur Lina Mohd;
Desai, Kartiki Vasant;
Lee, Jae Ho;
Kang, Eun-Suk;
Kim, Jin Sung;
Choi, Jung Kyoon

Publication type:

Article

Fluorescence-based incision assay for human XPF–ERCC1 activity identifies important elements of DNA junction recognition.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 13, p. e101, doi. 10.1093/nar/gks284

By:

Bowles, Maureen;
Lally, John;
Fadden, Andrew J.;
Mouilleron, Stephane;
Hammonds, Timothy;
McDonald, Neil Q.

Publication type:

Article

Mixture of differentially tagged Tol2 transposons accelerates conditional disruption of a broad spectrum of genes in mouse embryonic stem cells.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 13, p. e97, doi. 10.1093/nar/gks262

By:

Mayasari, N. Ika;
Mukougawa, Keiko;
Shigeoka, Toshiaki;
Kawakami, Koichi;
Kawaichi, Masashi;
Ishida, Yasumasa

Publication type:

Article

The CDK5 repressor CDK5RAP1 is a methylthiotransferase acting on nuclear and mitochondrial RNA.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 13, p. 6235, doi. 10.1093/nar/gks240

By:

Reiter, Veronika;
Matschkal, Dorothea M.S.;
Wagner, Mirko;
Globisch, Daniel;
Kneuttinger, Andrea C.;
Müller, Markus;
Carell, Thomas

Publication type:

Article

Single-stranded loops as end-label polarity markers for double-stranded linear DNA templates in atomic force microscopy.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 13, p. e99, doi. 10.1093/nar/gks276

By:

Billingsley, Daniel J.;
Crampton, Neal;
Kirkham, Jennifer;
Thomson, Neil H.;
Bonass, William A.

Publication type:

Article