Works matching IS 03051048 AND DT 2012 AND VI 40 AND IP 11

Results: 51

The transcription factors Pap1 and Prr1 collaborate to activate antioxidant, but not drug tolerance, genes in response to H2O2.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 11, p. 4816, doi. 10.1093/nar/gks141

By:

Calvo, Isabel A.;
García, Patricia;
Ayté, José;
Hidalgo, Elena

Publication type:

Article

A proposal for a new HIV-1 DLS structural model.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 11, p. 5012, doi. 10.1093/nar/gks156

By:

Sakuragi, Jun-ichi;
Ode, Hirotaka;
Sakuragi, Sayuri;
Shioda, Tatsuo;
Sato, Hironori

Publication type:

Article

Ca2+ improves organization of single-stranded DNA bases in human Rad51 filament, explaining stimulatory effect on gene recombination.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 11, p. 4904, doi. 10.1093/nar/gks140

By:

Fornander, Louise H.;
Frykholm, Karolin;
Reymer, Anna;
Renodon-Cornière, Axelle;
Takahashi, Masayuki;
Nordén, Bengt

Publication type:

Article

Structural architecture of the human long non-coding RNA, steroid receptor RNA activator.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 11, p. 5034, doi. 10.1093/nar/gks071

By:

Novikova, Irina V.;
Hennelly, Scott P.;
Sanbonmatsu, Karissa Y.

Publication type:

Article

A fast ab-initio method for predicting miRNA precursors in genomes.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 11, p. e80, doi. 10.1093/nar/gks146

By:

Tempel, Sébastien;
Tahi, Fariza

Publication type:

Article

Double threading through DNA: NMR structural study of a bis-naphthalene macrocycle bound to a thymine–thymine mismatch.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 11, p. 5115, doi. 10.1093/nar/gks067

By:

Jourdan, Muriel;
Granzhan, Anton;
Guillot, Regis;
Dumy, Pascal;
Teulade-Fichou, Marie-Paule

Publication type:

Article

Integrated analysis identifies a class of androgen-responsive genes regulated by short combinatorial long-range mechanism facilitated by CTCF.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 11, p. 4754, doi. 10.1093/nar/gks139

By:

Taslim, Cenny;
Chen, Zhong;
Huang, Kun;
Huang, Tim Hui-Ming;
Wang, Qianben;
Lin, Shili

Publication type:

Article

Deciphering the Sox-Oct partner code by quantitative cooperativity measurements.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 11, p. 4933, doi. 10.1093/nar/gks153

By:

Ng, Calista K. L.;
Li, Noel X.;
Chee, Sheena;
Prabhakar, Shyam;
Kolatkar, Prasanna R.;
Jauch, Ralf

Publication type:

Article

Junctions between i-motif tetramers in supramolecular structures.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 11, p. 5162, doi. 10.1093/nar/gks161

By:

Guittet, Eric;
Renciuk, Daniel;
Leroy, Jean-Louis

Publication type:

Article

Effective stiffening of DNA due to nematic ordering causes DNA molecules packed in phage capsids to preferentially form torus knots.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 11, p. 5129, doi. 10.1093/nar/gks157

By:

Reith, Daniel;
Cifra, Peter;
Stasiak, Andrzej;
Virnau, Peter

Publication type:

Article

Gemin5 proteolysis reveals a novel motif to identify L protease targets.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 11, p. 4942, doi. 10.1093/nar/gks172

By:

Piñeiro, David;
Ramajo, Jorge;
Bradrick, Shelton S.;
Martínez-Salas, Encarnación

Publication type:

Article

Comparison of microfluidic digital PCR and conventional quantitative PCR for measuring copy number variation.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 11, p. e82, doi. 10.1093/nar/gks203

By:

Whale, Alexandra S.;
Huggett, Jim F.;
Cowen, Simon;
Speirs, Valerie;
Shaw, Jacqui;
Ellison, Stephen;
Foy, Carole A.;
Scott, Daniel J.

Publication type:

Article

Expanding LAGLIDADG endonuclease scaffold diversity by rapidly surveying evolutionary sequence space.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 11, p. 4954, doi. 10.1093/nar/gkr1303

By:

Jacoby, Kyle;
Metzger, Michael;
Shen, Betty W.;
Certo, Michael T.;
Jarjour, Jordan;
Stoddard, Barry L.;
Scharenberg, Andrew M.

Publication type:

Article

Unrecognized sequence homologies may confound genome-wide association studies.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 11, p. 4774, doi. 10.1093/nar/gks169

By:

Galichon, Pierre;
Mesnard, Laurent;
Hertig, Alexandre;
Stengel, Bénédicte;
Rondeau, Eric

Publication type:

Article

FANSe: an accurate algorithm for quantitative mapping of large scale sequencing reads.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 11, p. e83, doi. 10.1093/nar/gks196

By:

Zhang, Gong;
Fedyunin, Ivan;
Kirchner, Sebastian;
Xiao, Chuanle;
Valleriani, Angelo;
Ignatova, Zoya

Publication type:

Article

Widespread occurrence of 5-methylcytosine in human coding and non-coding RNA.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 11, p. 5023, doi. 10.1093/nar/gks144

By:

Squires, Jeffrey E.;
Patel, Hardip R.;
Nousch, Marco;
Sibbritt, Tennille;
Humphreys, David T.;
Parker, Brian J.;
Suter, Catherine M.;
Preiss, Thomas

Publication type:

Article

Label-free, atomic force microscopy-based mapping of DNA intrinsic curvature for the nanoscale comparative analysis of bent duplexes.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 11, p. e84, doi. 10.1093/nar/gks210

By:

Buzio, Renato;
Repetto, Luca;
Giacopelli, Francesca;
Ravazzolo, Roberto;
Valbusa, Ugo

Publication type:

Article

Nucleic Acids Research - Editorial Board.

Published in:: Nucleic Acids Research, 2012, v. 40, n. 11, p. ii, doi. 10.1093/nar/gks073
Publication type:: Article

Post-transcriptional homeostasis and regulation of MCM2–7 in mammalian cells.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 11, p. 4914, doi. 10.1093/nar/gks176

By:

Chuang, Chen-Hua;
Yang, Dian;
Bai, Gongshi;
Freeland, Amy;
Pruitt, Steven C.;
Schimenti, John C.

Publication type:

Article

Combination of Sleeping Beauty transposition and chemically induced dimerization selection for robust production of engineered cells.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 11, p. e85, doi. 10.1093/nar/gks213

By:

Kacherovsky, Nataly;
Harkey, Michael A.;
Blau, C. Anthony;
Giachelli, Cecilia M.;
Pun, Suzie H.

Publication type:

Article

Chemical and biological approaches to improve the efficiency of homologous recombination in human cells mediated by artificial restriction DNA cutter.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 11, p. e81, doi. 10.1093/nar/gks185

By:

Katada, Hitoshi;
Harumoto, Toshimasa;
Shigi, Narumi;
Komiyama, Makoto

Publication type:

Article

Novel RNA base pair with higher specificity using single selenium atom.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 11, p. 5171, doi. 10.1093/nar/gks010

By:

Sun, Huiyan;
Sheng, Jia;
Hassan, Abdalla E. A.;
Jiang, Sibo;
Gan, Jianhua;
Huang, Zhen

Publication type:

Article

Recruitment of the ATP-dependent chromatin remodeler dMi-2 to the transcribed region of active heat shock genes.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 11, p. 4879, doi. 10.1093/nar/gks178

By:

Mathieu, Eve-Lyne;
Finkernagel, Florian;
Murawska, Magdalena;
Scharfe, Maren;
Jarek, Michael;
Brehm, Alexander

Publication type:

Article

DNA looping by FokI: the impact of twisting and bending rigidity on protein-induced looping dynamics.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 11, p. 4988, doi. 10.1093/nar/gks184

By:

Laurens, Niels;
Rusling, David A.;
Pernstich, Christian;
Brouwer, Ineke;
Halford, Stephen E.;
Wuite, Gijs J. L.

Publication type:

Article

A tunable zinc finger-based framework for Boolean logic computation in mammalian cells.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 11, p. 5180, doi. 10.1093/nar/gks142

By:

Lohmueller, Jason J.;
Armel, Thomas Z.;
Silver, Pamela A.

Publication type:

Article

Nsi1 plays a significant role in the silencing of ribosomal DNA in Saccharomyces cerevisiae.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 11, p. 4892, doi. 10.1093/nar/gks188

By:

Ha, Cheol Woong;
Sung, Min-Kyung;
Huh, Won-Ki

Publication type:

Article

Lactate, a product of glycolytic metabolism, inhibits histone deacetylase activity and promotes changes in gene expression.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 11, p. 4794, doi. 10.1093/nar/gks066

By:

Latham, Tom;
Mackay, Logan;
Sproul, Duncan;
Karim, Muhammed;
Culley, Jayne;
Harrison, David J;
Hayward, Larry;
Langridge-Smith, Pat;
Gilbert, Nick;
Ramsahoye, Bernard H

Publication type:

Article

miR-212/132 expression and functions: within and beyond the neuronal compartment.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 11, p. 4742, doi. 10.1093/nar/gks151

By:

Wanet, Anaïs;
Tacheny, Aurélie;
Arnould, Thierry;
Renard, Patricia

Publication type:

Article

HuR protein attenuates miRNA-mediated repression by promoting miRISC dissociation from the target RNA.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 11, p. 5088, doi. 10.1093/nar/gks148

By:

Kundu, Pradipta;
Fabian, Marc R.;
Sonenberg, Nahum;
Bhattacharyya, Suvendra N.;
Filipowicz, Witold

Publication type:

Article

Sequence dependence of isothermal DNA amplification via EXPAR.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 11, p. e87, doi. 10.1093/nar/gks230

By:

Qian, Jifeng;
Ferguson, Tanya M.;
Shinde, Deepali N.;
Ramírez-Borrero, Alissa J.;
Hintze, Arend;
Adami, Christoph;
Niemz, Angelika

Publication type:

Article

Subscriptions.

Published in:: Nucleic Acids Research, 2012, v. 40, n. 11, p. iii, doi. 10.1093/nar/gks117
Publication type:: Article

A pentatricopeptide repeat protein acts as a site-specificity factor at multiple RNA editing sites with unrelated cis-acting elements in plastids.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 11, p. 5052, doi. 10.1093/nar/gks164

By:

Okuda, Kenji;
Shikanai, Toshiharu

Publication type:

Article

Contribution of the first K-homology domain of poly(C)-binding protein 1 to its affinity and specificity for C-rich oligonucleotides.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 11, p. 5101, doi. 10.1093/nar/gks058

By:

Yoga, Yano M. K.;
Traore, Daouda A. K.;
Sidiqi, Mahjooba;
Szeto, Chris;
Pendini, Nicole R.;
Barker, Andrew;
Leedman, Peter J.;
Wilce, Jacqueline A.;
Wilce, Matthew C. J.

Publication type:

Article

The asparagine-transamidosome from Helicobacter pylori: a dual-kinetic mode in non-discriminating aspartyl-tRNA synthetase safeguards the genetic code.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 11, p. 4965, doi. 10.1093/nar/gks167

By:

Fischer, Frédéric;
Huot, Jonathan L.;
Lorber, Bernard;
Diss, Guillaume;
Hendrickson, Tamara L.;
Becker, Hubert D.;
Lapointe, Jacques;
Kern, Daniel

Publication type:

Article

DNA looping by FokI: the impact of synapse geometry on loop topology at varied site orientations.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 11, p. 4977, doi. 10.1093/nar/gks183

By:

Rusling, David A.;
Laurens, Niels;
Pernstich, Christian;
Wuite, Gijs J. L.;
Halford, Stephen E.

Publication type:

Article

Crystal structures of the tRNA:m2G6 methyltransferase Trm14/TrmN from two domains of life.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 11, p. 5149, doi. 10.1093/nar/gks163

By:

Fislage, Marcus;
Roovers, Martine;
Tuszynska, Irina;
Bujnicki, Janusz M.;
Droogmans, Louis;
Versées, Wim

Publication type:

Article

Structure of the bifunctional methyltransferase YcbY (RlmKL) that adds the m7G2069 and m2G2445 modifications in Escherichia coli 23S rRNA.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 11, p. 5138, doi. 10.1093/nar/gks160

By:

Wang, Kai-Tuo;
Desmolaize, Benoit;
Nan, Jie;
Zhang, Xiao-Wei;
Li, Lan-Fen;
Douthwaite, Stephen;
Su, Xiao-Dong

Publication type:

Article

Zinc-induced Dnmt1 expression involves antagonism between MTF-1 and nuclear receptor SHP.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 11, p. 4850, doi. 10.1093/nar/gks159

By:

Zhang, Yuxia;
Andrews, Glen K.;
Wang, Li

Publication type:

Article

Force spectroscopy reveals the DNA structural dynamics that govern the slow binding of Actinomycin D.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 11, p. 4925, doi. 10.1093/nar/gks069

By:

Paramanathan, Thayaparan;
Vladescu, Ioana;
McCauley, Micah J.;
Rouzina, Ioulia;
Williams, Mark C.

Publication type:

Article

Recognition and potential mechanisms for replication and erasure of cytosine hydroxymethylation.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 11, p. 4841, doi. 10.1093/nar/gks155

By:

Hashimoto, Hideharu;
Liu, Yiwei;
Upadhyay, Anup K.;
Chang, Yanqi;
Howerton, Shelley B.;
Vertino, Paula M.;
Zhang, Xing;
Cheng, Xiaodong

Publication type:

Article

The global repressor FliZ antagonizes gene expression by σS-containing RNA polymerase due to overlapping DNA binding specificity.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 11, p. 4783, doi. 10.1093/nar/gks055

By:

Pesavento, Christina;
Hengge, Regine

Publication type:

Article

Investigating the entire course of telithromycin binding to Escherichia coli ribosomes.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 11, p. 5078, doi. 10.1093/nar/gks174

By:

Kostopoulou, Ourania N.;
Petropoulos, Alexandros D.;
Dinos, George P.;
Choli-Papadopoulou, Theodora;
Kalpaxis, Dimitrios L.

Publication type:

Article

Exploiting mid-range DNA patterns for sequence classification: binary abstraction Markov models.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 11, p. 4765, doi. 10.1093/nar/gks154

By:

Shepard, Samuel S.;
McSweeny, Andrew;
Serpen, Gursel;
Fedorov, Alexei

Publication type:

Article

Novel insight into the non-coding repertoire through deep sequencing analysis.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 11, p. e86, doi. 10.1093/nar/gks228

By:

Isakov, Ofer;
Ronen, Roy;
Kovarsky, Judit;
Gabay, Aviram;
Gan, Ido;
Modai, Shira;
Shomron, Noam

Publication type:

Article

5′-UTR RNA G-quadruplexes: translation regulation and targeting.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 11, p. 4727, doi. 10.1093/nar/gks068

By:

Bugaut, Anthony;
Balasubramanian, Shankar

Publication type:

Article

Nucleic Acids Research.

Published in:: Nucleic Acids Research, 2012, v. 40, n. 11, p. i, doi. 10.1093/nar/gks095
Publication type:: Article

The DEAD-box helicase DDX3 supports the assembly of functional 80S ribosomes.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 11, p. 4998, doi. 10.1093/nar/gks070

By:

Geissler, Rene;
Golbik, Ralph P.;
Behrens, Sven-Erik

Publication type:

Article

Binding of the 5′-untranslated region of coronavirus RNA to zinc finger CCHC-type and RNA-binding motif 1 enhances viral replication and transcription.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 11, p. 5065, doi. 10.1093/nar/gks165

By:

Tan, Yong Wah;
Hong, Wanjin;
Liu, Ding Xiang

Publication type:

Article

Function of homo- and hetero-oligomers of human nucleoplasmin/nucleophosmin family proteins NPM1, NPM2 and NPM3 during sperm chromatin remodeling.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 11, p. 4861, doi. 10.1093/nar/gks162

By:

Okuwaki, Mitsuru;
Sumi, Ayako;
Hisaoka, Miharu;
Saotome-Nakamura, Ai;
Akashi, Satoko;
Nishimura, Yoshifumi;
Nagata, Kyosuke

Publication type:

Article

SIRT1 deacetylates SATB1 to facilitate MARHS2-MARɛ interaction and promote ɛ-globin expression.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 11, p. 4804, doi. 10.1093/nar/gks064

By:

Xue, Zheng;
Lv, Xiang;
Song, Wei;
Wang, Xing;
Zhao, Guang-Nian;
Wang, Wen-Tian;
Xiong, Jian;
Mao, Bei-Bei;
Yu, Wei;
Yang, Ben;
Wu, Jie;
Zhou, Li-Quan;
Hao, De-Long;
Dong, Wen-Ji;
Liu, De-Pei;
Liang, Chih-Chuan

Publication type:

Article