Works matching IS 03051048 AND DT 2012 AND VI 40 AND IP 10

Results: 53

Ebp2 and Brx1 function cooperatively in 60S ribosomal subunit assembly in Saccharomyces cerevisiae.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 10, p. 4574, doi. 10.1093/nar/gks057

By:

Shimoji, Kaori;
Jakovljevic, Jelena;
Tsuchihashi, Kanako;
Umeki, Yuka;
Wan, Kun;
Kawasaki, Suzuka;
Talkish, Jason;
Woolford, John L.;
Mizuta, Keiko

Publication type:

Article

Gli2 and MEF2C activate each other’s expression and function synergistically during cardiomyogenesis in vitro.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 10, p. 4723, doi. 10.1093/nar/gks415

By:

Voronova, Anastassia;
Al Madhoun, Ashraf;
Fischer, Anna;
Shelton, Michael;
Karamboulas, Christina;
Skerjanc, Ilona Sylvia

Publication type:

Article

Silencing of toxic gene expression by Fis.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 10, p. 4358, doi. 10.1093/nar/gks037

By:

Karambelkar, Shweta;
Swapna, Ganduri;
Nagaraja, Valakunja

Publication type:

Article

Chromatin domain boundary element search tool for Drosophila.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 10, p. 4385, doi. 10.1093/nar/gks045

By:

Srinivasan, Arumugam;
Mishra, Rakesh K.

Publication type:

Article

In vivo screening of modified siRNAs for non-specific antiviral effect in a small fish model: number and localization in the strands are important.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 10, p. 4653, doi. 10.1093/nar/gks033

By:

Schyth, Brian Dall;
Bramsen, Jesper Bertram;
Pakula, Malgorzata Maria;
Larashati, Sekar;
Kjems, Jørgen;
Wengel, Jesper;
Lorenzen, Niels

Publication type:

Article

Crystal structure of a c-kit promoter quadruplex reveals the structural role of metal ions and water molecules in maintaining loop conformation.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 10, p. 4691, doi. 10.1093/nar/gks023

By:

Wei, Dengguo;
Parkinson, Gary N.;
Reszka, Anthony P.;
Neidle, Stephen

Publication type:

Article

RNA folding with soft constraints: reconciliation of probing data and thermodynamic secondary structure prediction.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 10, p. 4261, doi. 10.1093/nar/gks009

By:

Washietl, Stefan;
Hofacker, Ivo L.;
Stadler, Peter F.;
Kellis, Manolis

Publication type:

Article

A workflow for genome-wide mapping of archaeal transcription factors with ChIP-seq.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 10, p. e74, doi. 10.1093/nar/gks063

By:

Wilbanks, Elizabeth G.;
Larsen, David J.;
Neches, Russell Y.;
Yao, Andrew I.;
Wu, Chia-Ying;
Kjolby, Rachel A. S.;
Facciotti, Marc T.

Publication type:

Article

Flap endonucleases pass 5′-flaps through a flexible arch using a disorder-thread-order mechanism to confer specificity for free 5′-ends.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 10, p. 4507, doi. 10.1093/nar/gks051

By:

Patel, Nikesh;
Atack, John M.;
Finger, L. David;
Exell, Jack C.;
Thompson, Peter;
Tsutakawa, Susan;
Tainer, John A.;
Williams, David M.;
Grasby, Jane A.

Publication type:

Article

CUX1 transcription factor is required for optimal ATM/ATR-mediated responses to DNA damage.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 10, p. 4483, doi. 10.1093/nar/gks041

By:

Vadnais, Charles;
Davoudi, Sayeh;
Afshin, Mojdeh;
Harada, Ryoko;
Dudley, Rachel;
Clermont, Pier-Luc;
Drobetsky, Elliot;
Nepveu, Alain

Publication type:

Article

MicroRNA-26a/b and their host genes cooperate to inhibit the G1/S transition by activating the pRb protein.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 10, p. 4615, doi. 10.1093/nar/gkr1278

By:

Zhu, Ying;
Lu, Yang;
Zhang, Qi;
Liu, Jing-Jing;
Li, Tuan-Jie;
Yang, Jian-Rong;
Zeng, Chunxian;
Zhuang, Shi-Mei

Publication type:

Article

Regulation of Enteric vapBC Transcription: Induction by VapC Toxin Dimer-Breaking.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 10, p. 4347, doi. 10.1093/nar/gks029

By:

Winther, Kristoffer S.;
Gerdes, Kenn

Publication type:

Article

InterPro in 2011: new developments in the family and domain prediction database.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 10, p. 4725, doi. 10.1093/nar/gks456

By:

Hunter, Sarah;
Jones, Philip;
Mitchell, Alex;
Apweiler, Rolf;
Attwood, Teresa K.;
Bateman, Alex;
Bernard, Thomas;
Binns, David;
Bork, Peer;
Burge, Sarah;
de Castro, Edouard;
Coggill, Penny;
Corbett, Matthew;
Das, Ujjwal;
Daugherty, Louise;
Duquenne, Lauranne;
Finn, Robert D.;
Fraser, Matthew;
Gough, Julian;
Haft, Daniel

Publication type:

Article

Differential expression analysis of multifactor RNA-Seq experiments with respect to biological variation.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 10, p. 4288, doi. 10.1093/nar/gks042

By:

McCarthy, Davis J.;
Chen, Yunshun;
Smyth, Gordon K.

Publication type:

Article

Fidelity of tRNA 5′-maturation: a possible basis for the functional dependence of archaeal and eukaryal RNase P on multiple protein cofactors.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 10, p. 4666, doi. 10.1093/nar/gks013

By:

Chen, Wen-Yi;
Singh, Deepali;
Lai, Lien B.;
Stiffler, Michael A.;
Lai, Hue D.;
Foster, Mark P.;
Gopalan, Venkat

Publication type:

Article

FRET studies of a landscape of Lac repressor-mediated DNA loops.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 10, p. 4432, doi. 10.1093/nar/gks019

By:

Haeusler, Aaron R.;
Goodson, Kathy A.;
Lillian, Todd D.;
Wang, Xiaoyu;
Goyal, Sachin;
Perkins, Noel C.;
Kahn, Jason D.

Publication type:

Article

A functional assay for microRNA target identification and validation.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 10, p. e75, doi. 10.1093/nar/gks145

By:

Gäken, Joop;
Mohamedali, Azim M.;
Jiang, Jie;
Malik, Farooq;
Stangl, Doris;
Smith, Alexander E.;
Chronis, Constantinos;
Kulasekararaj, Austin G.;
Thomas, N. Shaun B.;
Farzaneh, Farzin;
Tavassoli, Mahvash;
Mufti, Ghulam J.

Publication type:

Article

Summarizing and correcting the GC content bias in high-throughput sequencing.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 10, p. e72, doi. 10.1093/nar/gks001

By:

Benjamini, Yuval;
Speed, Terence P.

Publication type:

Article

Transcriptional regulation of gene expression during osmotic stress responses by the mammalian target of rapamycin.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 10, p. 4368, doi. 10.1093/nar/gks038

By:

Ortells, M. Carmen;
Morancho, Beatriz;
Drews-Elger, Katherine;
Viollet, Benoit;
Laderoute, Keith R.;
López-Rodríguez, Cristina;
Aramburu, Jose

Publication type:

Article

Genome-wide enhancer prediction from epigenetic signatures using genetic algorithm-optimized support vector machines.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 10, p. e77

By:

Fernández, Michael;
Miranda-Saavedra, Diego

Publication type:

Article

Transgene regulation in plants by alternative splicing of a suicide exon.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 10, p. 4701, doi. 10.1093/nar/gks032

By:

Hickey, Scott F.;
Sridhar, Malathy;
Westermann, Alexander J.;
Qin, Qian;
Vijayendra, Pooja;
Liou, Geoffrey;
Hammond, Ming C.

Publication type:

Article

Polyadenylation helps regulate functional tRNA levels in Escherichia coli.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 10, p. 4589, doi. 10.1093/nar/gks006

By:

Mohanty, Bijoy K.;
Maples, Valerie F.;
Kushner, Sidney R.

Publication type:

Article

P1 and P2 protein heterodimer binding to the P0 protein of Saccharomyces cerevisiae is relatively non-specific and a source of ribosomal heterogeneity.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 10, p. 4520

By:

Cárdenas, David;
Revuelta-Cervantes, Jesús;
Jiménez-Díaz, Antonio;
Camargo, Hendricka;
Remacha, Miguel;
Ballesta, Juan P. G.

Publication type:

Article

The conserved 5′ apical hairpin stem loops of bamboo mosaic virus and its satellite RNA contribute to replication competence.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 10, p. 4641, doi. 10.1093/nar/gks030

By:

Chen, Hsin-Chuan;
Kong, Lih-Ren;
Yeh, Ting-Yu;
Cheng, Chi-Ping;
Hsu, Yau-Heiu;
Lin, Na-Sheng

Publication type:

Article

Flexible tethering of primase and DNA Pol α in the eukaryotic primosome.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 10, p. 4726, doi. 10.1093/nar/gks431

By:

Núñez-Ramírez, Rafael;
Klinge, Sebastian;
Sauguet, Ludovic;
Melero, Roberto;
Recuero-Checa, María A.;
Kilkenny, Mairi;
Perera, Rajika L.;
García-Alvarez, Begoña;
Hall, Richard J.;
Nogales, Eva;
Pellegrini, Luca;
Llorca, Oscar

Publication type:

Article

DNA polymerase zeta is required for proliferation of normal mammalian cells.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 10, p. 4473, doi. 10.1093/nar/gks054

By:

Lange, Sabine S.;
Wittschieben, John P.;
Wood, Richard D.

Publication type:

Article

A novel non-homologous recombination-mediated mechanism for Escherichia coli unilateral flagellar phase variation.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 10, p. 4530, doi. 10.1093/nar/gks040

By:

Liu, Bin;
Hu, Bo;
Zhou, Zhemin;
Guo, Dan;
Guo, Xi;
Ding, Peng;
Feng, Lu;
Wang, Lei

Publication type:

Article

Mycobacterium smegmatis RqlH defines a novel clade of bacterial RecQ-like DNA helicases with ATP-dependent 3′–5′ translocase and duplex unwinding activities.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 10, p. 4604, doi. 10.1093/nar/gks046

By:

Ordonez, Heather;
Unciuleac, Mihaela;
Shuman, Stewart

Publication type:

Article

Dataset integration identifies transcriptional regulation of microRNA genes by PPARγ in differentiating mouse 3T3-L1 adipocytes.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 10, p. 4446, doi. 10.1093/nar/gks025

By:

John, Elisabeth;
Wienecke-Baldacchino, Anke;
Liivrand, Maria;
Heinäniemi, Merja;
Carlberg, Carsten;
Sinkkonen, Lasse

Publication type:

Article

Nucleic Acids Research.

Published in:: Nucleic Acids Research, 2012, v. 40, n. 10, p. i, doi. 10.1093/nar/gks094
Publication type:: Article

Subscriptions.

Published in:: Nucleic Acids Research, 2012, v. 40, n. 10, p. iii, doi. 10.1093/nar/gks116
Publication type:: Article

DNA helicase and helicase–nuclease enzymes with a conserved iron–sulfur cluster.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 10, p. 4247

By:

Wu, Yuliang;
Brosh, Robert M.

Publication type:

Article

High efficiency recombineering in lactic acid bacteria.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 10, p. e76, doi. 10.1093/nar/gks147

By:

van Pijkeren, Jan-Peter;
Britton, Robert A.

Publication type:

Article

Prebiotically plausible mechanisms increase compositional diversity of nucleic acid sequences.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 10, p. 4711, doi. 10.1093/nar/gks065

By:

Derr, Julien;
Manapat, Michael L.;
Rajamani, Sudha;
Leu, Kevin;
Xulvi-Brunet, Ramon;
Joseph, Isaac;
Nowak, Martin A.;
Chen, Irene A.

Publication type:

Article

Nucleic Acids Research - Editorial Board.

Published in:: Nucleic Acids Research, 2012, v. 40, n. 10, p. ii, doi. 10.1093/nar/gks072
Publication type:: Article

The nucleoid-associated proteins H-NS and FIS modulate the DNA supercoiling response of the pel genes, the major virulence factors in the plant pathogen bacterium Dickeya dadantii.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 10, p. 4306, doi. 10.1093/nar/gks014

By:

Ouafa, Zghidi-Abouzid;
Reverchon, Sylvie;
Lautier, Thomas;
Muskhelishvili, Georgi;
Nasser, William

Publication type:

Article

Biogenesis of mammalian microRNAs by a non-canonical processing pathway.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 10, p. 4626, doi. 10.1093/nar/gks026

By:

Havens, Mallory A.;
Reich, Ashley A.;
Duelli, Dominik M.;
Hastings, Michelle L.

Publication type:

Article

Disparity in the DNA translocase domains of SWI/SNF and ISW2.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 10, p. 4412, doi. 10.1093/nar/gks007

By:

Dechassa, Mekonnen Lemma;
Hota, Swetansu K.;
Sen, Payel;
Chatterjee, Nilanjana;
Prasad, Punit;
Bartholomew, Blaine

Publication type:

Article

Structure–function analysis and genetic interactions of the yeast branchpoint binding protein Msl5.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 10, p. 4539, doi. 10.1093/nar/gks049

By:

Chang, Jonathan;
Schwer, Beate;
Shuman, Stewart

Publication type:

Article

Comparison of alignment software for genome-wide bisulphite sequence data.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 10, p. e79, doi. 10.1093/nar/gks150

By:

Chatterjee, Aniruddha;
Stockwell, Peter A.;
Rodger, Euan J.;
Morison, Ian M.

Publication type:

Article

Identification of activated cryptic 5′ splice sites using structure profiles and odds measure.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 10, p. e73, doi. 10.1093/nar/gks061

By:

Tsai, Kun-Nan;
Wang, Daryi

Publication type:

Article

Analysis of MRE11's function in the 5′→3′ processing of DNA double-strand breaks.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 10, p. 4496, doi. 10.1093/nar/gks044

By:

Liao, Shuren;
Guay, Catherine;
Toczylowski, Thomas;
Yan, Hong

Publication type:

Article

A subgroup of SGS3-like proteins act redundantly in RNA-directed DNA methylation.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 10, p. 4422, doi. 10.1093/nar/gks034

By:

Xie, Meng;
Ren, Guodong;
Costa-Nunes, Pedro;
Pontes, Olga;
Yu, Bin

Publication type:

Article

DNA robustly stimulates FANCD2 monoubiquitylation in the complex with FANCI.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 10, p. 4553, doi. 10.1093/nar/gks053

By:

Sato, Koichi;
Toda, Kazue;
Ishiai, Masamichi;
Takata, Minoru;
Kurumizaka, Hitoshi

Publication type:

Article

Association of the interferon-β gene with pericentromeric heterochromatin is dynamically regulated during virus infection through a YY1-dependent mechanism.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 10, p. 4396, doi. 10.1093/nar/gks050

By:

Josse, T.;
Mokrani-Benhelli, H.;
Benferhat, R.;
Shestakova, E.;
Mansuroglu, Z.;
Kakanakou, H.;
Billecocq, A.;
Bouloy, M.;
Bonnefoy, Eliette

Publication type:

Article

Functional and structural characterization of the mammalian TREX-2 complex that links transcription with nuclear messenger RNA export.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 10, p. 4562, doi. 10.1093/nar/gks059

By:

Jani, Divyang;
Lutz, Sheila;
Hurt, Ed;
Laskey, Ronald A.;
Stewart, Murray;
Wickramasinghe, Vihandha O.

Publication type:

Article

DNMT1 modulates gene expression without its catalytic activity partially through its interactions with histone-modifying enzymes.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 10, p. 4334, doi. 10.1093/nar/gks031

By:

Clements, Eriko G.;
Mohammad, Helai P.;
Leadem, Benjamin R.;
Easwaran, Hariharan;
Cai, Yi;
Van Neste, Leander;
Baylin, Stephen B.

Publication type:

Article

Site-specific terminal and internal labeling of RNA by poly(A) polymerase tailing and copper-catalyzed or copper-free strain-promoted click chemistry.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 10, p. e78, doi. 10.1093/nar/gks062

By:

Winz, Marie-Luise;
Samanta, Ayan;
Benzinger, Dirk;
Jäschke, Andres

Publication type:

Article

Global regulation of gene expression by OxyR in an important human opportunistic pathogen.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 10, p. 4320, doi. 10.1093/nar/gks017

By:

Wei, Qing;
Le Minh, Phu Nguyen;
Dötsch, Andreas;
Hildebrand, Falk;
Panmanee, Warunya;
Elfarash, Ameer;
Schulz, Sebastian;
Plaisance, Stéphane;
Charlier, Daniel;
Hassett, Daniel;
Häussler, Susanne;
Cornelis, Pierre

Publication type:

Article

Performance comparison and evaluation of software tools for microRNA deep-sequencing data analysis.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 10, p. 4298, doi. 10.1093/nar/gks043

By:

Li, Yue;
Zhang, Zhuo;
Liu, Feng;
Vongsangnak, Wanwipa;
Jing, Qing;
Shen, Bairong

Publication type:

Article