Works matching IS 03051048 AND DT 2012 AND VI 40 AND IP 1

Results: 41

Optimized detection of transcription factor-binding sites in ChIP-seq experiments.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 1, p. 1, doi. 10.1093/nar/gkr839

By:

Elo, Laura L.;
Kallio, Aleksi;
Laajala, Teemu D.;
Hawkins, R. David;
Korpelainen, Eija;
Aittokallio, Tero

Publication type:

Article

Increased in vivo inhibition of gene expression by combining RNA interference and U1 inhibition.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 1, p. 1, doi. 10.1093/nar/gkr956

By:

Blazquez, Lorea;
Gonzalez-Rojas, Sandra Jovanna;
Abad, Amaya;
Razquin, Nerea;
Abad, Xabier;
Fortes, Puri

Publication type:

Article

Site-specific isotope labeling of long RNA for structural and mechanistic studies.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 1, p. 1, doi. 10.1093/nar/gkr951

By:

Ikumi Kawahara;
Kaichiro Haruta;
Yuta Ashihara;
Daichi Yamanaka;
Mituhiro Kuriyama;
Naoko Toki;
Yoshinori Kondo;
Kenta Teruya;
Junya Ishikawa;
Hiroyuki Furuta;
Yoshiya Ikawa;
Chojiro Kojima;
Yoshiyuki Tanaka

Publication type:

Article

Highly parallel oligonucleotide purification and functionalization using reversible chemistry.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 1, p. 1, doi. 10.1093/nar/gkr910

By:

York, Kerri T.;
Smith, Ryan C.;
Yang, Rob;
Melnyk, Peter C.;
Wiley, Melissa M.;
Turk, Casey M.;
Ronaghi, Mostafa;
Gunderson, Kevin L.;
Steemers, Frank J.

Publication type:

Article

Double indexing overcomes inaccuracies in multiplex sequencing on the Illumina platform.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 1, p. 1, doi. 10.1093/nar/gkr771

By:

Kircher, Martin;
Sawyer, Susanna;
Meyer, Matthias

Publication type:

Article

Integrated genome-wide analysis of transcription factor occupancy, RNA polymerase II binding and steady-state RNA levels identify differentially regulated functional gene classes.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 1, p. 148, doi. 10.1093/nar/gkr720

By:

Mokry, Michal;
Hatzis, Pantelis;
Schuijers, Jurian;
Lansu, Nico;
Ruzius, Frans-Paul;
Clevers, Hans;
Cuppen, Edwin

Publication type:

Article

Regulation of chromosomal replication initiation by oriC-proximal DnaA-box clusters in Bacillus subtilis.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 1, p. 220, doi. 10.1093/nar/gkr716

By:

Hajime Okumura;
Mika Yoshimura;
Mikako Ueki;
Taku Oshima;
Naotake Ogasawara;
Shu Ishikawa

Publication type:

Article

A promoter DNA demethylation landscape of human hematopoietic differentiation.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 1, p. 116, doi. 10.1093/nar/gkr685

By:

Calvanese, Vincenzo;
Fernández, Agustín F.;
Urdinguio, Rocío G.;
Suárez-Alvarez, Beatriz;
Mangas, Cristina;
Pérez-García, Vicente;
Bueno, Clara;
Montes, Rosa;
Ramos-Mejía, Verónica;
Martínez-Camblor, Pablo;
Ferrero, Cecilia;
Assenov, Yassen;
Bock, Christoph;
Menendez, Pablo;
Carrera, Ana Clara;
Lopez-Larrea, Carlos;
Fraga, Mario F.

Publication type:

Article

Inhibition of p53 acetylation by INHAT subunit SET/TAF-Iβ represses p53 activity.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 1, p. 75, doi. 10.1093/nar/gkr614

By:

Ji-Young Kim;
Kyu-Sun Lee;
Jin-Ee Seol;
Kweon Yu;
Chakravarti, Debabrata;
Sang-Beom Seo

Publication type:

Article

Deep sequencing of virus-infected cells reveals HIV-encoded small RNAs.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 1, p. 414, doi. 10.1093/nar/gkr719

By:

Schopman, Nick C.T.;
Willemsen, Marcel;
Ying Poi Liu;
Bradley, Ted;
van Kampen, Antoine;
Baas, Frank;
Berkhout, Ben;
Haasnoot, Joost

Publication type:

Article

miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 1, p. 37, doi. 10.1093/nar/gkr688

By:

Friedländer, Marc R.;
Mackowiak, Sebastian D.;
Na Li;
Wei Chen;
Rajewsky, Nikolaus

Publication type:

Article

Triplet repeat RNA structure and its role as pathogenic agent and therapeutic target.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 1, p. 11, doi. 10.1093/nar/gkr729

By:

Krzyzosiak, Wlodzimierz J.;
Sobczak, Krzysztof;
Wojciechowska, Marzena;
Fiszer, Agnieszka;
Mykowska, Agnieszka;
Kozlowski, Piotr

Publication type:

Article

Transcription factor Sox10 orchestrates activity of a neural crest-specific enhancer in the vicinity of its gene.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 1, p. 88, doi. 10.1093/nar/gkr734

By:

Wahlbuhl, Mandy;
Reiprich, Simone;
Vogl, Michael R.;
Bösl, Michael R.;
Wegner, Michael

Publication type:

Article

Genome-wide H4 K16 acetylation by SAS-I is deposited independently of transcription and histone exchange.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 1, p. 65, doi. 10.1093/nar/gkr649

By:

Heise, Franziska;
Ho-Ryun Chung;
Weber, Jan M.;
Zhenyu Xu;
Klein-Hitpass, Ludger;
Steinmetz, Lars M.;
Vingron, Martin;
Ehrenhofer-Murray, Ann E.

Publication type:

Article

Thiostrepton inhibits stable 70S ribosome binding and ribosome-dependent GTPase activation of elongation factor G and elongation factor 4.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 1, p. 360, doi. 10.1093/nar/gkr623

By:

Walter, Justin D.;
Hunter, Margaret;
Cobb, Melanie;
Traeger, Geoff;
Spiegel, P. Clint

Publication type:

Article

NF-κB regulates DNA double-strand break repair in conjunction with BRCA1–CtIP complexes.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 1, p. 181, doi. 10.1093/nar/gkr687

By:

Volcic, Meta;
Karl, Sabine;
Baumann, Bernd;
Salles, Daniela;
Daniel, Peter;
Fulda, Simone;
Wiesmüller, Lisa

Publication type:

Article

Non-targeting siRNA induces NPGPx expression to cooperate with exoribonuclease XRN2 for releasing the stress.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 1, p. 323, doi. 10.1093/nar/gkr714

By:

Pei-Chi Wei;
Wen-Ting Lo;
Mei-I. Su;
Jin-Yuh Shew;
Wen-Hwa Lee

Publication type:

Article

Loss of ribosomal RNA modification causes developmental defects in zebrafish.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 1, p. 391, doi. 10.1093/nar/gkr700

By:

Sayomi Higa-Nakamine;
Takeo Suzuki;
Tamayo Uechi;
Chakraborty, Anirban;
Yukari Nakajima;
Mikako Nakamura;
Naoko Hirano;
Tsutomu Suzuki;
Naoya Kenmochi

Publication type:

Article

Structure of the Trichomonas vaginalis Myb3 DNA-binding domain bound to a promoter sequence reveals a unique C-terminal β-hairpin conformation.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 1, p. 449, doi. 10.1093/nar/gkr707

By:

Shu-Yi Wei;
Yuan-Chao Lou;
Jia-Yin Tsai;
Meng-Ru Ho;
Chun-Chi Chou;
Rajasekaran, M.;
Hong-Ming Hsu;
Jung-Hsiang Tai;
Chwan-Deng Hsiao;
Chinpan Chen

Publication type:

Article

Histone hypoacetylation is required to maintain late replication timing of constitutive heterochromatin.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 1, p. 159, doi. 10.1093/nar/gkr723

By:

Casas-Delucchi, Corella S.;
van Bemmel, Joke G.;
Haase, Sebastian;
Herce, Henry D.;
Nowak, Danny;
Meilinger, Daniela;
Stear, Jeffrey H.;
Leonhardt, Heinrich;
Cardoso, M. Cristina

Publication type:

Article

dsRNA expression in the mouse elicits RNAi in oocytes and low adenosine deamination in somatic cells.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 1, p. 399, doi. 10.1093/nar/gkr702

By:

Nejepinska, Jana;
Malik, Radek;
Filkowski, Jody;
Flemr, Matyas;
Filipowicz, Witold;
Svoboda, Petr

Publication type:

Article

Ultrasensitive detection of rare mutations using next-generation targeted resequencing.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 1, p. 1, doi. 10.1093/nar/gkr861

By:

Flaherty, Patrick;
Natsoulis, Georges;
Muralidharan, Omkar;
Winters, Mark;
Buenrostro, Jason;
Bell, John;
Brown, Sheldon;
Holodniy, Mark;
Zhang, Nancy;
Ji, Hanlee P.

Publication type:

Article

Alanyl-tRNA synthetase genes of Vanderwaltozyma polyspora arose from duplication of a dual-functional predecessor of mitochondrial origin.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 1, p. 314, doi. 10.1093/nar/gkr724

By:

Chia-Pei Chang;
Yi-Kuan Tseng;
Chou-Yuan Ko;
Chien-Chia Wang

Publication type:

Article

Nuclear colocalization of transcription factor target genes strengthens coregulation in yeast.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 1, p. 27, doi. 10.1093/nar/gkr689

By:

Zhiming Dai;
Xianhua Dai

Publication type:

Article

Detection of recombination events in bacterial genomes from large population samples.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 1, p. 1, doi. 10.1093/nar/gkr928

By:

Marttinen, Pekka;
Hanage, William P.;
Croucher, Nicholas J.;
Connor, Thomas R.;
Harris, Simon R.;
Bentley, Stephen D.;
Corander, Jukka

Publication type:

Article

A cross-sample statistical model for SNP detection in short-read sequencing data.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 1, p. 1, doi. 10.1093/nar/gkr851

By:

Muralidharan, Omkar;
Natsoulis, Georges;
Bell, John;
Newburger, Daniel;
Hua Xu;
Kela, Itai;
Hanlee Ji;
Zhang, Nancy

Publication type:

Article

mRNA pseudoknot structures can act as ribosomal roadblocks.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 1, p. 303, doi. 10.1093/nar/gkr686

By:

Tholstrup, Jesper;
Oddershede, Lene B.;
Sørensen, Michael A.

Publication type:

Article

An insulator loop resides between the synthetically interacting elements of the human/rat conserved breast cancer susceptibility locus MCS5A/Mcs5a.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 1, p. 132, doi. 10.1093/nar/gkr610

By:

Smits, Bart M. G.;
Traun, Benjamin D.;
Devries, Thomas L.;
Tran, Ann;
Samuelson, David;
Haag, Jill D.;
Gould, Michael

Publication type:

Article

The biogenesis and characterization of mammalian microRNAs of mirtron origin.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 1, p. 438, doi. 10.1093/nar/gkr722

By:

Sibley, Christopher R.;
Seow, Yiqi;
Saayman, Sheena;
Dijkstra, Krijn K.;
El Andaloussi, Samir;
Weinberg, Marc S.;
Wood, Matthew J. A.

Publication type:

Article

A conserved lysine residue of plant Whirly proteins is necessary for higher order protein assembly and protection against DNA damage.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 1, p. 258, doi. 10.1093/nar/gkr740

By:

Cappadocia, Laurent;
Parent, Jean-Sébastien;
Zampini, Éric;
Lepage, Étienne;
Sygusch, Jurgen;
Brisson, Normand

Publication type:

Article

The genome maintenance factor Mgs1 is targeted to sites of replication stress by ubiquitylated PCNA.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 1, p. 245, doi. 10.1093/nar/gkr738

By:

Saugar, Irene;
Parker, Joanne L.;
Zhao, Shengkai;
Ulrich, Helle D.

Publication type:

Article

Targeted detection of in vivo endogenous DNA base damage reveals preferential base excision repair in the transcribed strand.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 1, p. 206, doi. 10.1093/nar/gkr704

By:

Reis, António M. C.;
Mills, Wilbur K.;
Ramachandran, Ilangovan;
Friedberg, Errol C.;
Thompson, David;
Queimado, Lurdes

Publication type:

Article

Differential regulation of RNF8-mediated Lys48- and Lys63-based poly-ubiquitylation.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 1, p. 196, doi. 10.1093/nar/gkr655

By:

Tsz-Mei Lok, Gabriel;
Sy, Shirley M.-H.;
Sui-Sui Dong;
Yick-Pang Ching;
Sai Wah Tsao;
Thomson, Timothy M.;
Huen, Michael S. Y.

Publication type:

Article

Epigenetic regulation by RARα maintains ligand-independent transcriptional activity.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 1, p. 102, doi. 10.1093/nar/gkr637

By:

Laursen, Kristian B.;
Pui-Mun Wong;
Gudas, Lorraine J.

Publication type:

Article

DNA-induced dimerization of the single-stranded DNA binding telomeric protein Pot1 from Schizosaccharomyces pombe.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 1, p. 235, doi. 10.1093/nar/gkr721

By:

Nandakumar, Jayakrishnan;
Cech, Thomas R.

Publication type:

Article

Opening--closing dynamics of the mitochondrial transcription pre-initiation complex.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 1, p. 371, doi. 10.1093/nar/gkr736

By:

Hajin Kim;
Guo-Qing Tang;
Patel, Smita S.;
Ha, Taekjip

Publication type:

Article

Genomic binding of Pol III transcription machinery and relationship with TFIIS transcription factor distribution in mouse embryonic stem cells.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 1, p. 270, doi. 10.1093/nar/gkr737

By:

Carrière, Lucie;
Graziani, Sébastien;
Alibert, Olivier;
Ghavi-Helm, Yad;
Boussouar, Fayçal;
Humbertclaude, Hélène;
Jounier, Sylvie;
Aude, Jean-Christophe;
Keime, Céline;
Murvai, Janos;
Foglio, Mario;
Gut, Marta;
Gut, Ivo;
Lathrop, Mark;
Soutourina, Julie;
Gérard, Matthieu;
Werner, Michel

Publication type:

Article

DNA damage bypass operates in the S and G2 phases of the cell cycle and exhibits differential mutagenicity.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 1, p. 170, doi. 10.1093/nar/gkr596

By:

Diamant, Noam;
Hendel, Ayal;
Vered, Ilan;
Carell, Thomas;
Reißner, Thomas;
de Wind, Niels;
Geacinov, Nicholas;
Livneh, Zvi

Publication type:

Article

Fine tuning of RFX/DAF-19-regulated target gene expression through binding to multiple sites in Caenorhabditis elegans.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 1, p. 53, doi. 10.1093/nar/gkr690

By:

Chu, Jeffery S. C.;
Tarailo-Graovac, Maja;
Di Zhang;
Wang, Jun;
Uyar, Bora;
Tu, Domena;
Trinh, Joanne;
Baillie, David L.;
Nansheng Chen

Publication type:

Article

Biochemical, inhibition and inhibitor resistance studies of xenotropic murine leukemia virus-related virus reverse transcriptase.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 1, p. 345, doi. 10.1093/nar/gkr694

By:

Ndongwe, Tanyaradzwa P.;
Adedeji, Adeyemi O.;
Michailidis, Eleftherios;
Yee Tsuey Ong;
Atsuko Hachiya;
Marchand, Bruno;
Ryan, Emily M.;
Rai, Devendra K.;
Kirby, Karen A.;
Whatley, Angela S.;
Burke, Donald H.;
Johnson, Marc;
Shilei Ding;
Yi-Min Zheng;
Shan-Lu Liu;
Ei-Ichi Kodama;
Delviks-Frankenberry, Krista A.;
Pathak, Vinay K.;
Hiroaki Mitsuya;
Parniak, Michael A.

Publication type:

Article

tRNA<sup>His</sup>-guanylyltransferase establishes tRNA<sub>His</sub> identity.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 1, p. 333, doi. 10.1093/nar/gkr696

By:

Heinemann, Ilka U.;
Akiyoshi Nakamura;
O'Donoghue, Patrick;
Eiler, Daniel;
Söll, Dieter

Publication type:

Article