Works matching IS 03051048 AND DT 2012

Results: 1559

DNA catenation maintains structure of human metaphase chromosomes.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 22, p. 11428, doi. 10.1093/nar/gks931

By:

Bauer, David L. V.;
Marie, Rodolphe;
Rasmussen, Kristian H.;
Kristensen, Anders;
Mir, Kalim U.

Publication type:

Article

OASIS: an automated program for global investigation of bacterial and archaeal insertion sequences.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 22, p. e174, doi. 10.1093/nar/gks778

By:

Robinson, David G.;
Lee, Ming-Chun;
Marx, Christopher J.

Publication type:

Article

miRmap: Comprehensive prediction of microRNA target repression strength.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 22, p. 11673, doi. 10.1093/nar/gks901

By:

Vejnar, Charles E.;
Zdobnov, Evgeny M.

Publication type:

Article

Editorial: NAR Awards 2012.

Published in:: Nucleic Acids Research, 2012, v. 40, n. 22, p. 11173, doi. 10.1093/nar/gks1317
Publication type:: Article

A SUMO-interacting motif activates budding yeast ubiquitin ligase Rad18 towards SUMO-modified PCNA.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 22, p. 11380, doi. 10.1093/nar/gks892

By:

Parker, Joanne L.;
Ulrich, Helle D.

Publication type:

Article

Nucleic Acids Research - Editorial Board.

Published in:: Nucleic Acids Research, 2012, v. 40, n. 22, p. ii, doi. 10.1093/nar/gks084
Publication type:: Article

Nucleic Acids Research.

Published in:: Nucleic Acids Research, 2012, v. 40, n. 22, p. i, doi. 10.1093/nar/gks106
Publication type:: Article

A four-subunit DNA polymerase ζ complex containing Pol δ accessory subunits is essential for PCNA-mediated mutagenesis.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 22, p. 11618, doi. 10.1093/nar/gks948

By:

Makarova, Alena V.;
Stodola, Joseph L.;
Burgers, Peter M.

Publication type:

Article

Self-organization of domain structures by DNA-loop-extruding enzymes.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 22, p. 11202, doi. 10.1093/nar/gks925

By:

Alipour, Elnaz;
Marko, John F.

Publication type:

Article

The folding of the hepatitis C virus internal ribosome entry site depends on the 3′-end of the viral genome.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 22, p. 11697, doi. 10.1093/nar/gks927

By:

Romero-López, Cristina;
Barroso-delJesus, Alicia;
García-Sacristán, Ana;
Briones, Carlos;
Berzal-Herranz, Alfredo

Publication type:

Article

Hundreds of conserved non-coding genomic regions are independently lost in mammals.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 22, p. 11463, doi. 10.1093/nar/gks905

By:

Hiller, Michael;
Schaar, Bruce T.;
Bejerano, Gill

Publication type:

Article

RNA-binding protein AUF1 represses Dicer expression.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 22, p. 11531, doi. 10.1093/nar/gks930

By:

Abdelmohsen, Kotb;
Tominaga-Yamanaka, Kumiko;
Srikantan, Subramanya;
Yoon, Je-Hyun;
Kang, Min-Ju;
Gorospe, Myriam

Publication type:

Article

Suppression and recovery of BRCA1-mediated transcription by HP1γ via modulation of promoter occupancy.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 22, p. 11321, doi. 10.1093/nar/gks947

By:

Choi, Jae Duk;
Park, Mi Ae;
Lee, Jong-Soo

Publication type:

Article

Pr is a member of a restricted class of σ70-dependent promoters that lack a recognizable −10 element.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 22, p. 11308, doi. 10.1093/nar/gks934

By:

del Peso-Santos, Teresa;
Landfors, Mattias;
Skärfstad, Eleonore;
Ryden, Patrik;
Shingler, Victoria

Publication type:

Article

Binding of hairpin pyrrole and imidazole polyamides to DNA: relationship between torsion angle and association rate constants.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 22, p. 11510, doi. 10.1093/nar/gks897

By:

Han, Yong-Woon;
Matsumoto, Tomoko;
Yokota, Hiroaki;
Kashiwazaki, Gengo;
Morinaga, Hironobu;
Hashiya, Kaori;
Bando, Toshikazu;
Harada, Yoshie;
Sugiyama, Hiroshi

Publication type:

Article

Antisense morpholino targeting just upstream from a poly(A) tail junction of maternal mRNA removes the tail and inhibits translation.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 22, p. e173, doi. 10.1093/nar/gks765

By:

Wada, Tadashi;
Hara, Masatoshi;
Taneda, Takuya;
Qingfu, Cao;
Takata, Ryouhei;
Moro, Kanako;
Takeda, Kei;
Kishimoto, Takeo;
Handa, Hiroshi

Publication type:

Article

Evolutionary transitions to new DNA methyltransferases through target site expansion and shrinkage.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 22, p. 11627, doi. 10.1093/nar/gks944

By:

Rockah-Shmuel, Liat;
Tawfik, Dan S.

Publication type:

Article

A global DNA methylation and gene expression analysis of early human B-cell development reveals a demethylation signature and transcription factor network.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 22, p. 11339, doi. 10.1093/nar/gks957

By:

Lee, Seung-Tae;
Xiao, Yuanyuan;
Muench, Marcus O.;
Xiao, Jianqiao;
Fomin, Marina E.;
Wiencke, John K.;
Zheng, Shichun;
Dou, Xiaoqin;
de Smith, Adam;
Chokkalingam, Anand;
Buffler, Patricia;
Ma, Xiaomei;
Wiemels, Joseph L.

Publication type:

Article

Phosphorylation of PNKP by ATM prevents its proteasomal degradation and enhances resistance to oxidative stress.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 22, p. 11404, doi. 10.1093/nar/gks909

By:

Parsons, Jason L.;
Khoronenkova, Svetlana V.;
Dianova, Irina I.;
Ternette, Nicola;
Kessler, Benedikt M.;
Datta, Pran K.;
Dianov, Grigory L.

Publication type:

Article

Subscriptions.

Published in:: Nucleic Acids Research, 2012, v. 40, n. 22, p. iii, doi. 10.1093/nar/gks128
Publication type:: Article

Sequence-specific cleavage of the RNA strand in DNA–RNA hybrids by the fusion of ribonuclease H with a zinc finger.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 22, p. 11563, doi. 10.1093/nar/gks885

By:

Sulej, Agata A.;
Tuszynska, Irina;
Skowronek, Krzysztof J.;
Nowotny, Marcin;
Bujnicki, Janusz M.

Publication type:

Article

Article Withdrawn: GNARE: A Grid-based Server for the Analysis of User Submitted Genomes.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 22, p. e177, doi. 10.1093/nar/gkm366

By:

Glass, Elizabeth;
Rodriguez, Alexis;
Romine, Margaret;
Zhang, Yi;
D'Souza, Mark;
Sulakhe, Dinanath;
Syed, Mustafa;
Maltsev, Natalia

Publication type:

Article

HRP2 determines the efficiency and specificity of HIV-1 integration in LEDGF/p75 knockout cells but does not contribute to the antiviral activity of a potent LEDGF/p75-binding site integrase inhibitor.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 22, p. 11518, doi. 10.1093/nar/gks913

By:

Wang, Hao;
Jurado, Kellie A.;
Wu, Xiaolin;
Shun, Ming-Chieh;
Li, Xiang;
Ferris, Andrea L.;
Smith, Steven J.;
Patel, Pratiq A.;
Fuchs, James R.;
Cherepanov, Peter;
Kvaratskhelia, Mamuka;
Hughes, Stephen H.;
Engelman, Alan

Publication type:

Article

AIRE-PHD fingers are structural hubs to maintain the integrity of chromatin-associated interactome.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 22, p. 11756, doi. 10.1093/nar/gks933

By:

Gaetani, Massimiliano;
Matafora, Vittoria;
Saare, Mario;
Spiliotopoulos, Dimitrios;
Mollica, Luca;
Quilici, Giacomo;
Chignola, Francesca;
Mannella, Valeria;
Zucchelli, Chiara;
Peterson, Pärt;
Bachi, Angela;
Musco, Giovanna

Publication type:

Article

LtmA, a novel cyclic di-GMP-responsive activator, broadly regulates the expression of lipid transport and metabolism genes in Mycobacterium smegmatis.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 22, p. 11292, doi. 10.1093/nar/gks923

By:

Li, Weihui;
He, Zheng-Guo

Publication type:

Article

A minimal i-motif stabilized by minor groove G:T:G:T tetrads.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 22, p. 11737, doi. 10.1093/nar/gks911

By:

Escaja, Núria;
Viladoms, Júlia;
Garavís, Miguel;
Villasante, Alfredo;
Pedroso, Enrique;
González, Carlos

Publication type:

Article

Pmt1, a Dnmt2 homolog in Schizosaccharomyces pombe, mediates tRNA methylation in response to nutrient signaling.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 22, p. 11648, doi. 10.1093/nar/gks956

By:

Becker, Maria;
Müller, Sara;
Nellen, Wolfgang;
Jurkowski, Tomasz P.;
Jeltsch, Albert;
Ehrenhofer-Murray, Ann E.

Publication type:

Article

Telomere length homeostasis and telomere position effect on a linear human artificial chromosome are dictated by the genetic background.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 22, p. 11477, doi. 10.1093/nar/gks926

By:

Weuts, An;
Voet, Thierry;
Verbeeck, Jelle;
Lambrechts, Nathalie;
Wirix, Evelyne;
Schoonjans, Luc;
Danloy, Sophie;
Marynen, Peter;
Froyen, Guy

Publication type:

Article

Defining the functional footprint for recognition and repair of deaminated DNA.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 22, p. 11638, doi. 10.1093/nar/gks952

By:

Baldwin, Michael R.;
O’Brien, Patrick J.

Publication type:

Article

Targeted manipulation of heterochromatin rescues MeCP2 Rett mutants and re-establishes higher order chromatin organization.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 22, p. e176, doi. 10.1093/nar/gks784

By:

Casas-Delucchi, Corella S.;
Becker, Annette;
Bolius, Janine J.;
Cardoso, M. Cristina

Publication type:

Article

Manipulating replisome dynamics to enhance lambda Red-mediated multiplex genome engineering.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 22, p. e170, doi. 10.1093/nar/gks751

By:

Lajoie, M. J.;
Gregg, C. J.;
Mosberg, J. A.;
Washington, G. C.;
Church, G. M.

Publication type:

Article

Compression of next-generation sequencing reads aided by highly efficient de novo assembly.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 22, p. e171, doi. 10.1093/nar/gks754

By:

Jones, Daniel C.;
Ruzzo, Walter L.;
Peng, Xinxia;
Katze, Michael G.

Publication type:

Article

Regulation of human Dicer by the resident ER membrane protein CLIMP-63.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 22, p. 11603

By:

Pépin, Geneviève;
Perron, Marjorie P.;
Provost, Patrick

Publication type:

Article

Mek1 stabilizes Hop1-Thr318 phosphorylation to promote interhomolog recombination and checkpoint responses during yeast meiosis.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 22, p. 11416, doi. 10.1093/nar/gks920

By:

Chuang, Chi-Ning;
Cheng, Yun-Hsin;
Wang, Ting-Fang

Publication type:

Article

Selection is more intelligent than design: improving the affinity of a bivalent ligand through directed evolution.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 22, p. 11777, doi. 10.1093/nar/gks899

By:

Ahmad, Kareem M.;
Xiao, Yi;
Soh, H. Tom

Publication type:

Article

Evaluation of single CpG sites as proxies of CpG island methylation states at the genome scale.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 22, p. 11490, doi. 10.1093/nar/gks928

By:

Barrera, Víctor;
Peinado, Miguel A.

Publication type:

Article

Mre11 ATLD17/18 mutation retains Tel1/ATM activity but blocks DNA double-strand break repair.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 22, p. 11435, doi. 10.1093/nar/gks954

By:

Limbo, Oliver;
Moiani, Davide;
Kertokalio, Aryandi;
Wyman, Claire;
Tainer, John A.;
Russell, Paul

Publication type:

Article

Mechanism of allele-selective inhibition of huntingtin expression by duplex RNAs that target CAG repeats: function through the RNAi pathway.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 22, p. 11270, doi. 10.1093/nar/gks907

By:

Hu, Jiaxin;
Liu, Jing;
Yu, Dongbo;
Chu, Yongjun;
Corey, David R.

Publication type:

Article

The C-terminus of Dpb2 is required for interaction with Pol2 and for cell viability.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 22, p. 11545, doi. 10.1093/nar/gks880

By:

Isoz, Isabelle;
Persson, Ulf;
Volkov, Kirill;
Johansson, Erik

Publication type:

Article

Distinct contributions of MSL complex subunits to the transcriptional enhancement responsible for dosage compensation in Drosophila.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 22, p. 11281, doi. 10.1093/nar/gks890

By:

Dunlap, David;
Yokoyama, Ruth;
Ling, Huiping;
Sun, He-Ying;
McGill, Kerry;
Cugusi, Simona;
Lucchesi, John C.

Publication type:

Article

Probing Rad51-DNA interactions by changing DNA twist.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 22, p. 11769, doi. 10.1093/nar/gks1131

By:

Atwell, Scott;
Disseau, Ludovic;
Stasiak, Alicja Z.;
Stasiak, Andrzej;
Renodon-Cornière, Axelle;
Takahashi, Masayuki;
Viovy, Jean-Louis;
Cappello, Giovanni

Publication type:

Article

SPOC1 modulates DNA repair by regulating key determinants of chromatin compaction and DNA damage response.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 22, p. 11363, doi. 10.1093/nar/gks868

By:

Mund, Andreas;
Schubert, Tobias;
Staege, Hannah;
Kinkley, Sarah;
Reumann, Kerstin;
Kriegs, Malte;
Fritsch, Lauriane;
Battisti, Valentine;
Ait-Si-Ali, Slimane;
Hoffbeck, Anne-Sophie;
Soutoglou, Evi;
Will, Hans

Publication type:

Article

Demethylation initiated by ROS1 glycosylase involves random sliding along DNA.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 22, p. 11554, doi. 10.1093/nar/gks894

By:

Ponferrada-Marín, María Isabel;
Roldán-Arjona, Teresa;
Ariza, Rafael R.

Publication type:

Article

DNA-binding determinants promoting NHEJ by human Polµ.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 22, p. 11389, doi. 10.1093/nar/gks896

By:

Martin, Maria Jose;
Juarez, Raquel;
Blanco, Luis

Publication type:

Article

The extent of sequence complementarity correlates with the potency of cellular miRNA-mediated restriction of HIV-1.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 22, p. 11684, doi. 10.1093/nar/gks912

By:

Houzet, Laurent;
Klase, Zachary;
Yeung, Man Lung;
Wu, Annie;
Le, Shu-Yun;
Quiñones, Mariam;
Jeang, Kuan-Teh

Publication type:

Article

CAF-1-induced oligomerization of histones H3/H4 and mutually exclusive interactions with Asf1 guide H3/H4 transitions among histone chaperones and DNA.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 22, p. 11229, doi. 10.1093/nar/gks906

By:

Liu, Wallace H.;
Roemer, Sarah C.;
Port, Alex M.;
Churchill, Mair E. A.

Publication type:

Article

Improved predictions of transcription factor binding sites using physicochemical features of DNA.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 22, p. e175, doi. 10.1093/nar/gks771

By:

Maienschein-Cline, Mark;
Dinner, Aaron R.;
Hlavacek, William S.;
Mu, Fangping

Publication type:

Article

Engineering the DNA cytosine-5 methyltransferase reaction for sequence-specific labeling of DNA.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 22, p. 11594

By:

Lukinavičius, Gražvydas;
Lapinaitė, Audronė;
Urbanavičiūtė, Giedrė;
Gerasimaitė, Rūta;
Klimašauskas, Saulius

Publication type:

Article

Genome-wide analysis of FoxO1 binding in hepatic chromatin: Potential involvement of FoxO1 in linking retinoid signaling to hepatic gluconeogenesis.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 22, p. 11499, doi. 10.1093/nar/gks932

By:

Shin, Dong-Ju;
Joshi, Pujan;
Hong, Seung-Hyun;
Mosure, Kathleen;
Shin, Dong-Guk;
Osborne, Timothy F.

Publication type:

Article

Transcription in the maintenance of centromere chromatin identity.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 22, p. 11178, doi. 10.1093/nar/gks921

By:

Chan, F. Lyn;
Wong, Lee H.

Publication type:

Article