Works matching IS 03051048 AND DT 2011 AND VI 39 AND IP suppl_1

Results: 186

REDfly v3.0: toward a comprehensive database of transcriptional regulatory elements in Drosophila.

Published in:

Nucleic Acids Research, 2011, v. 39, n. suppl_1, p. D118, doi. 10.1093/nar/gkq999

By:

Gallo, Steven M.;
Gerrard, Dave T.;
Miner, David;
Simich, Michael;
Des Soye, Benjamin;
Bergman, Casey M.;
Halfon, Marc S.

Publication type:

Article

dbDNV: a resource of duplicated gene nucleotide variants in human genome.

Published in:

Nucleic Acids Research, 2011, v. 39, n. suppl_1, p. D920

By:

Ho, Meng-Ru;
Tsai, Kuo-Wang;
Chen, Chun-houh;
Lin, Wen-chang

Publication type:

Article

PROMISCUOUS: a database for network-based drug-repositioning.

Published in:

Nucleic Acids Research, 2011, v. 39, n. suppl_1, p. D1060, doi. 10.1093/nar/gkq1037

By:

von Eichborn, Joachim;
Murgueitio, Manuela S.;
Dunkel, Mathias;
Koerner, Soeren;
Bourne, Philip E.;
Preissner, Robert

Publication type:

Article

Phospho3D 2.0: an enhanced database of three-dimensional structures of phosphorylation sites.

Published in:

Nucleic Acids Research, 2011, v. 39, n. suppl_1, p. D268, doi. 10.1093/nar/gkq936

By:

Zanzoni, Andreas;
Carbajo, Daniel;
Diella, Francesca;
Gherardini, Pier Federico;
Tramontano, Anna;
Helmer-Citterich, Manuela;
Via, Allegra

Publication type:

Article

YPA: an integrated repository of promoter features in Saccharomyces cerevisiae.

Published in:

Nucleic Acids Research, 2011, v. 39, n. suppl_1, p. D647, doi. 10.1093/nar/gkq1086

By:

Chang, Darby Tien-Hao;
Huang, Cheng-Yi;
Wu, Chi-Yeh;
Wu, Wei-Sheng

Publication type:

Article

PSSRdb: a relational database of polymorphic simple sequence repeats extracted from prokaryotic genomes.

Published in:

Nucleic Acids Research, 2011, v. 39, n. suppl_1, p. D601, doi. 10.1093/nar/gkq1198

By:

Kumar, Pankaj;
Chaitanya, Pasumarthy S.;
Nagarajaram, Hampapathalu A.

Publication type:

Article

NGSmethDB: a database for next-generation sequencing single-cytosine-resolution DNA methylation data.

Published in:

Nucleic Acids Research, 2011, v. 39, n. suppl_1, p. D75, doi. 10.1093/nar/gkq942

By:

Hackenberg, Michael;
Barturen, Guillermo;
Oliver, José L.

Publication type:

Article

The BioGRID Interaction Database: 2011 update.

Published in:

Nucleic Acids Research, 2011, v. 39, n. suppl_1, p. D698, doi. 10.1093/nar/gkq1116

By:

Stark, Chris;
Breitkreutz, Bobby-Joe;
Chatr-aryamontri, Andrew;
Boucher, Lorrie;
Oughtred, Rose;
Livstone, Michael S.;
Nixon, Julie;
Van Auken, Kimberly;
Wang, Xiaodong;
Shi, Xiaoqi;
Reguly, Teresa;
Rust, Jennifer M.;
Winter, Andrew;
Dolinski, Kara;
Tyers, Mike

Publication type:

Article

DBASS3 and DBASS5: databases of aberrant 3′- and 5′-splice sites.

Published in:

Nucleic Acids Research, 2011, v. 39, n. suppl_1, p. D86, doi. 10.1093/nar/gkq887

By:

Buratti, Emanuele;
Chivers, Martin;
Hwang, Gyulin;
Vorechovsky, Igor

Publication type:

Article

The RIKEN integrated database of mammals.

Published in:

Nucleic Acids Research, 2011, v. 39, n. suppl_1, p. D861, doi. 10.1093/nar/gkq1078

By:

Masuya, Hiroshi;
Makita, Yuko;
Kobayashi, Norio;
Nishikata, Koro;
Yoshida, Yuko;
Mochizuki, Yoshiki;
Doi, Koji;
Takatsuki, Terue;
Waki, Kazunori;
Tanaka, Nobuhiko;
Ishii, Manabu;
Matsushima, Akihiro;
Takahashi, Satoshi;
Hijikata, Atsushi;
Kozaki, Kouji;
Furuichi, Teiichi;
Kawaji, Hideya;
Wakana, Shigeharu;
Nakamura, Yukio;
Yoshiki, Atsushi

Publication type:

Article

DOMINE: a comprehensive collection of known and predicted domain-domain interactions.

Published in:

Nucleic Acids Research, 2011, v. 39, n. suppl_1, p. D730, doi. 10.1093/nar/gkq1229

By:

Yellaboina, Sailu;
Tasneem, Asba;
Zaykin, Dmitri V.;
Raghavachari, Balaji;
Jothi, Raja

Publication type:

Article

FragmentStore—a comprehensive database of fragments linking metabolites, toxic molecules and drugs.

Published in:

Nucleic Acids Research, 2011, v. 39, n. suppl_1, p. D1049, doi. 10.1093/nar/gkq969

By:

Ahmed, Jessica;
Worth, Catherine L.;
Thaben, Paul;
Matzig, Christian;
Blasse, Corinna;
Dunkel, Mathias;
Preissner, Robert

Publication type:

Article

The Protein Ontology: a structured representation of protein forms and complexes.

Published in:

Nucleic Acids Research, 2011, v. 39, n. suppl_1, p. D539, doi. 10.1093/nar/gkq907

By:

Natale, Darren A.;
Arighi, Cecilia N.;
Barker, Winona C.;
Blake, Judith A.;
Bult, Carol J.;
Caudy, Michael;
Drabkin, Harold J.;
D’Eustachio, Peter;
Evsikov, Alexei V.;
Huang, Hongzhan;
Nchoutmboube, Jules;
Roberts, Natalia V.;
Smith, Barry;
Zhang, Jian;
Wu, Cathy H.

Publication type:

Article

VKCDB: voltage-gated K+ channel database updated and upgraded.

Published in:

Nucleic Acids Research, 2011, v. 39, n. suppl_1, p. D362, doi. 10.1093/nar/gkq1000

By:

Gallin, Warren J.;
Boutet, Patrick A.

Publication type:

Article

BriX: a database of protein building blocks for structural analysis, modeling and design.

Published in:

Nucleic Acids Research, 2011, v. 39, n. suppl_1, p. D435, doi. 10.1093/nar/gkq972

By:

Vanhee, Peter;
Verschueren, Erik;
Baeten, Lies;
Stricher, Francois;
Serrano, Luis;
Rousseau, Frederic;
Schymkowitz, Joost

Publication type:

Article

Community cyberinfrastructure for Advanced Microbial Ecology Research and Analysis: the CAMERA resource.

Published in:

Nucleic Acids Research, 2011, v. 39, n. suppl_1, p. D546, doi. 10.1093/nar/gkq1102

By:

Sun, Shulei;
Chen, Jing;
Li, Weizhong;
Altintas, Ilkay;
Lin, Abel;
Peltier, Steve;
Stocks, Karen;
Allen, Eric E.;
Ellisman, Mark;
Grethe, Jeffrey;
Wooley, John

Publication type:

Article

The UCSC cancer genomics browser: update 2011.

Published in:

Nucleic Acids Research, 2011, v. 39, n. suppl_1, p. D951, doi. 10.1093/nar/gkq1113

By:

Sanborn, J. Zachary;
Benz, Stephen C.;
Craft, Brian;
Szeto, Christopher;
Kober, Kord M.;
Meyer, Laurence;
Vaske, Charles J.;
Goldman, Mary;
Smith, Kayla E.;
Kuhn, Robert M.;
Karolchik, Donna;
Kent, W. James;
Stuart, Joshua M.;
Haussler, David;
Zhu, Jingchun

Publication type:

Article

ViralZone: a knowledge resource to understand virus diversity.

Published in:

Nucleic Acids Research, 2011, v. 39, n. suppl_1, p. D576, doi. 10.1093/nar/gkq901

By:

Hulo, Chantal;
de Castro, Edouard;
Masson, Patrick;
Bougueleret, Lydie;
Bairoch, Amos;
Xenarios, Ioannis;
Le Mercier, Philippe

Publication type:

Article

RBPDB: a database of RNA-binding specificities.

Published in:

Nucleic Acids Research, 2011, v. 39, n. suppl_1, p. D301, doi. 10.1093/nar/gkq1069

By:

Cook, Kate B.;
Kazan, Hilal;
Zuberi, Khalid;
Morris, Quaid;
Hughes, Timothy R.

Publication type:

Article

PlantTFDB 2.0: update and improvement of the comprehensive plant transcription factor database.

Published in:

Nucleic Acids Research, 2011, v. 39, n. suppl_1, p. D1114, doi. 10.1093/nar/gkq1141

By:

Zhang, He;
Jin, Jinpu;
Tang, Liang;
Zhao, Yi;
Gu, Xiaocheng;
Gao, Ge;
Luo, Jingchu

Publication type:

Article

LocDB: experimental annotations of localization for Homo sapiens and Arabidopsis thaliana.

Published in:

Nucleic Acids Research, 2011, v. 39, n. suppl_1, p. D230, doi. 10.1093/nar/gkq927

By:

Rastogi, Shruti;
Rost, Burkhard

Publication type:

Article

Allele frequency net: a database and online repository for immune gene frequencies in worldwide populations.

Published in:

Nucleic Acids Research, 2011, v. 39, n. suppl_1, p. D913, doi. 10.1093/nar/gkq1128

By:

Gonzalez-Galarza, Faviel F.;
Christmas, Stephen;
Middleton, Derek;
Jones, Andrew R.

Publication type:

Article

The Sequence Read Archive.

Published in:

Nucleic Acids Research, 2011, v. 39, n. suppl_1, p. D19

By:

Leinonen, Rasko;
Sugawara, Hideaki;
Shumway, Martin

Publication type:

Article

New tools and methods for direct programmatic access to the dbSNP relational database.

Published in:

Nucleic Acids Research, 2011, v. 39, n. suppl_1, p. D901, doi. 10.1093/nar/gkq1054

By:

Saccone, Scott F.;
Quan, Jiaxi;
Mehta, Gaurang;
Bolze, Raphael;
Thomas, Prasanth;
Deelman, Ewa;
Tischfield, Jay A.;
Rice, John P.

Publication type:

Article

Laminin database: a tool to retrieve high-throughput and curated data for studies on laminins.

Published in:

Nucleic Acids Research, 2011, v. 39, n. suppl_1, p. D320, doi. 10.1093/nar/gkq1055

By:

Golbert, Daiane C. F.;
Linhares-Lacerda, Leandra;
Almeida, Luiz G.;
Correa-de-Santana, Eliane;
de Oliveira, Alice R.;
Mundstein, Alex S.;
Savino, Wilson;
de Vasconcelos, Ana T. R.

Publication type:

Article

MatrixDB, the extracellular matrix interaction database.

Published in:

Nucleic Acids Research, 2011, v. 39, n. suppl_1, p. D235, doi. 10.1093/nar/gkq830

By:

Chautard, Emilie;
Fatoux-Ardore, Marie;
Ballut, Lionel;
Thierry-Mieg, Nicolas;
Ricard-Blum, Sylvie

Publication type:

Article

WebGeSTer DB—a transcription terminator database.

Published in:

Nucleic Acids Research, 2011, v. 39, n. suppl_1, p. D129, doi. 10.1093/nar/gkq971

By:

Mitra, Anirban;
Kesarwani, Anil K.;
Pal, Debnath;
Nagaraja, Valakunja

Publication type:

Article

3did: identification and classification of domain-based interactions of known three-dimensional structure.

Published in:

Nucleic Acids Research, 2011, v. 39, n. suppl_1, p. D718, doi. 10.1093/nar/gkq962

By:

Stein, Amelie;
Céol, Arnaud;
Aloy, Patrick

Publication type:

Article

PREX: PeroxiRedoxin classification indEX, a database of subfamily assignments across the diverse peroxiredoxin family.

Published in:

Nucleic Acids Research, 2011, v. 39, n. suppl_1, p. D332, doi. 10.1093/nar/gkq1060

By:

Soito, Laura;
Williamson, Chris;
Knutson, Stacy T.;
Fetrow, Jacquelyn S.;
Poole, Leslie B.;
Nelson, Kimberly J.

Publication type:

Article

DroID 2011: a comprehensive, integrated resource for protein, transcription factor, RNA and gene interactions for Drosophila.

Published in:

Nucleic Acids Research, 2011, v. 39, n. suppl_1, p. D736, doi. 10.1093/nar/gkq1092

By:

Murali, Thilakam;
Pacifico, Svetlana;
Yu, Jingkai;
Guest, Stephen;
Roberts, George G.;
Finley, Russell L.

Publication type:

Article

MIPS: curated databases and comprehensive secondary data resources in 2010.

Published in:

Nucleic Acids Research, 2011, v. 39, n. suppl_1, p. D220, doi. 10.1093/nar/gkq1157

By:

Mewes, H. Werner;
Ruepp, Andreas;
Theis, Fabian;
Rattei, Thomas;
Walter, Mathias;
Frishman, Dmitrij;
Suhre, Karsten;
Spannagl, Manuel;
Mayer, Klaus F.X.;
Stümpflen, Volker;
Antonov, Alexey

Publication type:

Article

tRNADB-CE 2011: tRNA gene database curated manually by experts.

Published in:

Nucleic Acids Research, 2011, v. 39, n. suppl_1, p. D210, doi. 10.1093/nar/gkq1007

By:

Abe, Takashi;
Ikemura, Toshimichi;
Sugahara, Junichi;
Kanai, Akio;
Ohara, Yasuo;
Uehara, Hiroshi;
Kinouchi, Makoto;
Kanaya, Shigehiko;
Yamada, Yuko;
Muto, Akira;
Inokuchi, Hachiro

Publication type:

Article

Tomato Functional Genomics Database: a comprehensive resource and analysis package for tomato functional genomics.

Published in:

Nucleic Acids Research, 2011, v. 39, n. suppl_1, p. D1156, doi. 10.1093/nar/gkq991

By:

Fei, Zhangjun;
Joung, Je-Gun;
Tang, Xuemei;
Zheng, Yi;
Huang, Mingyun;
Lee, Je Min;
McQuinn, Ryan;
Tieman, Denise M.;
Alba, Rob;
Klee, Harry J.;
Giovannoni, James J.

Publication type:

Article

HIT: linking herbal active ingredients to targets.

Published in:

Nucleic Acids Research, 2011, v. 39, n. suppl_1, p. D1055

By:

Ye, Hao;
Ye, Li;
Kang, Hong;
Zhang, Duanfeng;
Tao, Lin;
Tang, Kailin;
Liu, Xueping;
Zhu, Ruixin;
Liu, Qi;
Chen, Y. Z.;
Li, Yixue;
Cao, Zhiwei

Publication type:

Article

BRENDA, the enzyme information system in 2011.

Published in:

Nucleic Acids Research, 2011, v. 39, n. suppl_1, p. D670, doi. 10.1093/nar/gkq1089

By:

Scheer, Maurice;
Grote, Andreas;
Chang, Antje;
Schomburg, Ida;
Munaretto, Cornelia;
Rother, Michael;
Söhngen, Carola;
Stelzer, Michael;
Thiele, Juliane;
Schomburg, Dietmar

Publication type:

Article

TOPSAN: a dynamic web database for structural genomics.

Published in:

Nucleic Acids Research, 2011, v. 39, n. suppl_1, p. D494, doi. 10.1093/nar/gkq902

By:

Ellrott, Kyle;
Zmasek, Christian M.;
Weekes, Dana;
Sri Krishna, S.;
Bakolitsa, Constantina;
Godzik, Adam;
Wooley, John

Publication type:

Article

The Comparative Toxicogenomics Database: update 2011.

Published in:

Nucleic Acids Research, 2011, v. 39, n. suppl_1, p. D1067, doi. 10.1093/nar/gkq813

By:

Davis, Allan Peter;
King, Benjamin L.;
Mockus, Susan;
Murphy, Cynthia G.;
Saraceni-Richards, Cynthia;
Rosenstein, Michael;
Wiegers, Thomas;
Mattingly, Carolyn J.

Publication type:

Article

KaPPA-View4: a metabolic pathway database for representation and analysis of correlation networks of gene co-expression and metabolite co-accumulation and omics data.

Published in:

Nucleic Acids Research, 2011, v. 39, n. suppl_1, p. D677, doi. 10.1093/nar/gkq989

By:

Sakurai, Nozomu;
Ara, Takeshi;
Ogata, Yoshiyuki;
Sano, Ryosuke;
Ohno, Takashi;
Sugiyama, Kenjiro;
Hiruta, Atsushi;
Yamazaki, Kiyoshi;
Yano, Kentaro;
Aoki, Koh;
Aharoni, Asaph;
Hamada, Kazuki;
Yokoyama, Koji;
Kawamura, Shingo;
Otsuka, Hirofumi;
Tokimatsu, Toshiaki;
Kanehisa, Minoru;
Suzuki, Hideyuki;
Saito, Kazuki;
Shibata, Daisuke

Publication type:

Article

Full-parasites: database of full-length cDNAs of apicomplexa parasites, 2010 update.

Published in:

Nucleic Acids Research, 2011, v. 39, n. suppl_1, p. D625, doi. 10.1093/nar/gkq1111

By:

Tuda, Josef;
Mongan, Arthur E.;
Tolba, Mohammed E. M.;
Imada, Mihoko;
Yamagishi, Junya;
Xuan, Xuenan;
Wakaguri, Hiroyuki;
Sugano, Sumio;
Sugimoto, Chihiro;
Suzuki, Yutaka

Publication type:

Article

COMBREX: a project to accelerate the functional annotation of prokaryotic genomes.

Published in:

Nucleic Acids Research, 2011, v. 39, n. suppl_1, p. D11, doi. 10.1093/nar/gkq1168

By:

Roberts, Richard J.;
Chang, Yi-Chien;
Hu, Zhenjun;
Rachlin, John N.;
Anton, Brian P.;
Pokrzywa, Revonda M.;
Choi, Han-Pil;
Faller, Lina L.;
Guleria, Jyotsna;
Housman, Genevieve;
Klitgord, Niels;
Mazumdar, Varun;
McGettrick, Mark G.;
Osmani, Lais;
Swaminathan, Rajeswari;
Tao, Kevin R.;
Letovsky, Stan;
Vitkup, Dennis;
Segrè, Daniel;
Salzberg, Steven L.

Publication type:

Article

RiceXPro: a platform for monitoring gene expression in japonica rice grown under natural field conditions.

Published in:

Nucleic Acids Research, 2011, v. 39, n. suppl_1, p. D1141, doi. 10.1093/nar/gkq1085

By:

Sato, Yutaka;
Antonio, Baltazar A.;
Namiki, Nobukazu;
Takehisa, Hinako;
Minami, Hiroshi;
Kamatsuki, Kaori;
Sugimoto, Kazuhiko;
Shimizu, Yuji;
Hirochika, Hirohiko;
Nagamura, Yoshiaki

Publication type:

Article

starBase: a database for exploring microRNA–mRNA interaction maps from Argonaute CLIP-Seq and Degradome-Seq data.

Published in:

Nucleic Acids Research, 2011, v. 39, n. suppl_1, p. D202, doi. 10.1093/nar/gkq1056

By:

Yang, Jian-Hua;
Li, Jun-Hao;
Shao, Peng;
Zhou, Hui;
Chen, Yue-Qin;
Qu, Liang-Hu

Publication type:

Article

TIARA: a database for accurate analysis of multiple personal genomes based on cross-technology.

Published in:

Nucleic Acids Research, 2011, v. 39, n. suppl_1, p. D883, doi. 10.1093/nar/gkq1101

By:

Hong, Dongwan;
Park, Sung-Soo;
Ju, Young Seok;
Kim, Sheehyun;
Shin, Jong-Yeon;
Kim, Sujung;
Yu, Saet-Byeol;
Lee, Won-Chul;
Lee, Seungbok;
Park, Hansoo;
Kim, Jong-Il;
Seo, Jeong-Sun

Publication type:

Article

PCRPi-DB: a database of computationally annotated hot spots in protein interfaces.

Published in:

Nucleic Acids Research, 2011, v. 39, n. suppl_1, p. D755, doi. 10.1093/nar/gkq1068

By:

Segura, Joan;
Fernandez-Fuentes, Narcis

Publication type:

Article

NIASGBdb: NIAS Genebank databases for genetic resources and plant disease information.

Published in:

Nucleic Acids Research, 2011, v. 39, n. suppl_1, p. D1108, doi. 10.1093/nar/gkq916

By:

Takeya, Masaru;
Yamasaki, Fukuhiro;
Uzuhashi, Shihomi;
Aoki, Takayuki;
Sawada, Hiroyuki;
Nagai, Toshirou;
Tomioka, Keisuke;
Tomooka, Norihiko;
Sato, Toyozo;
Kawase, Makoto

Publication type:

Article

NCBI GEO: archive for functional genomics data sets—10 years on.

Published in:

Nucleic Acids Research, 2011, v. 39, n. suppl_1, p. D1005, doi. 10.1093/nar/gkq1184

By:

Barrett, Tanya;
Troup, Dennis B.;
Wilhite, Stephen E.;
Ledoux, Pierre;
Evangelista, Carlos;
Kim, Irene F.;
Tomashevsky, Maxim;
Marshall, Kimberly A.;
Phillippy, Katherine H.;
Sherman, Patti M.;
Muertter, Rolf N.;
Holko, Michelle;
Ayanbule, Oluwabukunmi;
Yefanov, Andrey;
Soboleva, Alexandra

Publication type:

Article

The International Nucleotide Sequence Database Collaboration.

Published in:

Nucleic Acids Research, 2011, v. 39, n. suppl_1, p. D15

By:

Cochrane, Guy;
Karsch-Mizrachi, Ilene;
Nakamura, Yasukazu

Publication type:

Article

The RNA helicase database.

Published in:

Nucleic Acids Research, 2011, v. 39, n. suppl_1, p. D338, doi. 10.1093/nar/gkq1002

By:

Jankowsky, Anja;
Guenther, Ulf-Peter;
Jankowsky, Eckhard

Publication type:

Article

The Gypsy Database (GyDB) of mobile genetic elements: release 2.0.

Published in:

Nucleic Acids Research, 2011, v. 39, n. suppl_1, p. D70, doi. 10.1093/nar/gkq1061

By:

Llorens, Carlos;
Futami, Ricardo;
Covelli, Laura;
Domínguez-Escribá, Laura;
Viu, Jose M.;
Tamarit, Daniel;
Aguilar-Rodríguez, Jose;
Vicente-Ripolles, Miguel;
Fuster, Gonzalo;
Bernet, Guillermo P.;
Maumus, Florian;
Munoz-Pomer, Alfonso;
Sempere, Jose M.;
Latorre, Amparo;
Moya, Andres

Publication type:

Article

FGDB: revisiting the genome annotation of the plant pathogen Fusarium graminearum.

Published in:

Nucleic Acids Research, 2011, v. 39, n. suppl_1, p. D637, doi. 10.1093/nar/gkq1016

By:

Wong, Philip;
Walter, Mathias;
Lee, Wanseon;
Mannhaupt, Gertrud;
Münsterkötter, Martin;
Mewes, Hans-Werner;
Adam, Gerhard;
Güldener, Ulrich

Publication type:

Article