Works matching IS 03051048 AND DT 2011 AND VI 39 AND IP 8

Results: 48

The suboptimal structures find the optimal RNAs: homology search for bacterial non-coding RNAs using suboptimal RNA structures.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 8, p. 3418, doi. 10.1093/nar/gkq1186

By:

Pánek, Josef;
Krásný, Libor;
Bobek, Jan;
Ježková, Edita;
Korelusová, Jana;
Vohradský, Jiří

Publication type:

Article

VCre/VloxP and SCre/SloxP: new site-specific recombination systems for genome engineering.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 8, p. e49, doi. 10.1093/nar/gkq1280

By:

Suzuki, Emiko;
Nakayama, Manabu

Publication type:

Article

Arxes: retrotransposed genes required for adipogenesis.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 8, p. 3224, doi. 10.1093/nar/gkq1289

By:

Prokesch, Andreas;
Bogner-Strauss, Juliane G.;
Hackl, Hubert;
Rieder, Dietmar;
Neuhold, Claudia;
Walenta, Evelyn;
Krogsdam, Anne;
Scheideler, Marcel;
Papak, Christine;
Wong, Wing-Cheong;
Vinson, Charles;
Eisenhaber, Frank;
Trajanoski, Zlatko

Publication type:

Article

A novel method for the efficient and selective identification of 5-hydroxymethylcytosine in genomic DNA.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 8, p. e55, doi. 10.1093/nar/gkr051

By:

Robertson, Adam B.;
Dahl, John A.;
Vågbø, Cathrine B.;
Tripathi, Pankaj;
Krokan, Hans E.;
Klungland, Arne

Publication type:

Article

ATP independent type IB topoisomerase of Leishmania donovani is stimulated by ATP: an insight into the functional mechanism.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 8, p. 3295, doi. 10.1093/nar/gkq1284

By:

Sengupta, Souvik;
Ganguly, Agneyo;
Roy, Amit;
BoseDasgupta, Somdeb;
D’Annessa, Ilda;
Desideri, Alessandro;
Majumder, Hemanta K.

Publication type:

Article

Two groups of phenylalanine biosynthetic operon leader peptides genes: a high level of apparently incidental frameshifting in decoding Escherichia coli pheL.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 8, p. 3079, doi. 10.1093/nar/gkq1272

By:

Gurvich, Olga L.;
Näsvall, S. Joakim;
Baranov, Pavel V.;
Björk, Glenn R.;
Atkins, John F.

Publication type:

Article

Artificial trans-encoded small non-coding RNAs specifically silence the selected gene expression in bacteria.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 8, p. e50, doi. 10.1093/nar/gkr034

By:

Man, Shuai;
Cheng, Rubin;
Miao, Cuicui;
Gong, Qianhong;
Gu, Yuchao;
Lu, Xinzhi;
Han, Feng;
Yu, Wengong

Publication type:

Article

Structures and activities of archaeal members of the LigD 3′-phosphoesterase DNA repair enzyme superfamily.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 8, p. 3310, doi. 10.1093/nar/gkq1163

By:

Smith, Paul;
Nair, Pravin A.;
Das, Ushati;
Zhu, Hui;
Shuman, Stewart

Publication type:

Article

Determinants of Nam8-dependent splicing of meiotic pre-mRNAs.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 8, p. 3427, doi. 10.1093/nar/gkq1328

By:

Qiu, Zhicheng R.;
Schwer, Beate;
Shuman, Stewart

Publication type:

Article

Amplification ratio control system for copy number variation genotyping.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 8, p. e54, doi. 10.1093/nar/gkr046

By:

Guthrie, Philip A. I.;
Gaunt, Tom R.;
Abdollahi, Mohammed R.;
Rodriguez, Santiago;
Lawlor, Debbie A.;
Smith, George Davey;
Day, Ian N. M.

Publication type:

Article

Molecular breeding of polymerases for resistance to environmental inhibitors.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 8, p. e51, doi. 10.1093/nar/gkq1360

By:

Baar, Claudia;
d’Abbadie, Marc;
Vaisman, Alexandra;
Arana, Mercedes E.;
Hofreiter, Michael;
Woodgate, Roger;
Kunkel, Thomas A.;
Holliger, Philipp

Publication type:

Article

Nucleosome accessibility governed by the dimer/tetramer interface.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 8, p. 3093, doi. 10.1093/nar/gkq1279

By:

Böhm, Vera;
Hieb, Aaron R.;
Andrews, Andrew J.;
Gansen, Alexander;
Rocker, Andrea;
Tóth, Katalin;
Luger, Karolin;
Langowski, Jörg

Publication type:

Article

Genome-wide evidence for an essential role of the human Staf/ZNF143 transcription factor in bidirectional transcription.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 8, p. 3116, doi. 10.1093/nar/gkq1301

By:

Anno, Yannick-Noël;
Myslinski, Evelyne;
Ngondo-Mbongo, Richard Patryk;
Krol, Alain;
Poch, Olivier;
Lecompte, Odile;
Carbon, Philippe

Publication type:

Article

The relationship between HIV-1 genome RNA dimerization, virion maturation and infectivity†.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 8, p. 3404, doi. 10.1093/nar/gkq1314

By:

Ohishi, Masahisa;
Nakano, Takashi;
Sakuragi, Sayuri;
Shioda, Tatsuo;
Sano, Kouichi;
Sakuragi, Jun-ichi

Publication type:

Article

Structural and functional characterization of the Mycobacterium tuberculosis uridine monophosphate kinase: insights into the allosteric regulation†.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 8, p. 3458, doi. 10.1093/nar/gkq1250

By:

Labesse, Gilles;
Benkali, Khaled;
Salard-Arnaud, Isabelle;
Gilles, Anne-Marie;
Munier-Lehmann, Hélène

Publication type:

Article

Regulation of nucleotide excision repair activity by transcriptional and post-transcriptional control of the XPA protein.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 8, p. 3176, doi. 10.1093/nar/gkq1318

By:

Kang, Tae-Hong;
Reardon, Joyce T.;
Sancar, Aziz

Publication type:

Article

The translational repressor 4E-BP called to order by eIF4E: new structural insights by SAXS.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 8, p. 3496, doi. 10.1093/nar/gkq1306

By:

Gosselin, Pauline;
Oulhen, Nathalie;
Jam, Murielle;
Ronzca, Justyna;
Cormier, Patrick;
Czjzek, Mirjam;
Cosson, Bertrand

Publication type:

Article

Mutations in the intersubunit bridge regions of 16S rRNA affect decoding and subunit–subunit interactions on the 70S ribosome.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 8, p. 3321, doi. 10.1093/nar/gkq1253

By:

Sun, Qing;
Vila-Sanjurjo, Antón;
O’Connor, Michael

Publication type:

Article

Mechanistic insights into an engineered riboswitch: a switching element which confers riboswitch activity.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 8, p. 3363, doi. 10.1093/nar/gkq946

By:

Weigand, Julia E.;
Schmidtke, Sina R.;
Will, Tristan J.;
Duchardt-Ferner, Elke;
Hammann, Christian;
Wöhnert, Jens;
Suess, Beatrix

Publication type:

Article

Analysis of Escherichia coli RNase E and RNase III activity in vivo using tiling microarrays.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 8, p. 3188, doi. 10.1093/nar/gkq1242

By:

Stead, Mark B.;
Marshburn, Sarah;
Mohanty, Bijoy K.;
Mitra, Joydeep;
Castillo, Lourdes Peňa;
Ray, Debashish;
van Bakel, Harm;
Hughes, Timothy R.;
Kushner, Sidney R.

Publication type:

Article

Fox-3 and PSF interact to activate neural cell-specific alternative splicing.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 8, p. 3064, doi. 10.1093/nar/gkq1221

By:

Kim, Kee K.;
Kim, Yong C.;
Adelstein, Robert S.;
Kawamoto, Sachiyo

Publication type:

Article

Towards a genome-wide transcriptogram: the Saccharomyces cerevisiae case.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 8, p. 3005, doi. 10.1093/nar/gkq1269

By:

Rybarczyk-Filho, José Luiz;
Castro, Mauro A. A.;
Dalmolin, Rodrigo J. S.;
Moreira, José C. F.;
Brunnet, Leonardo G.;
de Almeida, Rita M. C.

Publication type:

Article

Insights into the evolution of Archaea and eukaryotic protein modifier systems revealed by the genome of a novel archaeal group.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 8, p. 3204, doi. 10.1093/nar/gkq1228

By:

Nunoura, Takuro;
Takaki, Yoshihiro;
Kakuta, Jungo;
Nishi, Shinro;
Sugahara, Junichi;
Kazama, Hiromi;
Chee, Gab-Joo;
Hattori, Masahira;
Kanai, Akio;
Atomi, Haruyuki;
Takai, Ken;
Takami, Hideto

Publication type:

Article

Stability of telomeric G-quadruplexes.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 8, p. 3282, doi. 10.1093/nar/gkq1292

By:

Tran, Phong Lan Thao;
Mergny, Jean-Louis;
Alberti, Patrizia

Publication type:

Article

Interaction of STAT6 with its co-activator SRC-1/NCoA-1 is regulated by dephosphorylation of the latter via PP2A.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 8, p. 3255, doi. 10.1093/nar/gkq1225

By:

Münz, Tobias;
Litterst, Claudia M.;
Pfitzner, Edith

Publication type:

Article

Structural and functional analysis of the Rous Sarcoma virus negative regulator of splicing and demonstration of its activation by the 9G8 SR protein.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 8, p. 3388, doi. 10.1093/nar/gkq1114

By:

Bar, Aileen;
Marchand, Virginie;
Khoury, Georges;
Dreumont, Natacha;
Mougin, Annie;
Robas, Nathalie;
Stévenin, James;
Visvikis, Athanase;
Branlant, Christiane

Publication type:

Article

RhoA activation participates in rearrangement of processing bodies and release of nucleated AU-rich mRNAs.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 8, p. 3446, doi. 10.1093/nar/gkq1302

By:

Takahashi, Shinya;
Sakurai, Kyoko;
Ebihara, Arisa;
Kajiho, Hiroaki;
Saito, Kota;
Kontani, Kenji;
Nishina, Hiroshi;
Katada, Toshiaki

Publication type:

Article

Unexpected origins of the enhanced pairing affinity of 2′-fluoro-modified RNA.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 8, p. 3482, doi. 10.1093/nar/gkq1270

By:

Pallan, Pradeep S.;
Greene, Emily M.;
Jicman, Paul Andrei;
Pandey, Rajendra K.;
Manoharan, Muthiah;
Rozners, Eriks;
Egli, Martin

Publication type:

Article

An upstream ORF with non-AUG start codon is translated in vivo but dispensable for translational control of GCN4 mRNA.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 8, p. 3128, doi. 10.1093/nar/gkq1251

By:

Zhang, Fan;
Hinnebusch, Alan G.

Publication type:

Article

Poly (ADP-ribose) polymerase (PARP) is not involved in base excision repair but PARP inhibition traps a single-strand intermediate.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 8, p. 3166, doi. 10.1093/nar/gkq1241

By:

Ström, Cecilia E.;
Johansson, Fredrik;
Uhlén, Mathias;
Szigyarto, Cristina Al-Khalili;
Erixon, Klaus;
Helleday, Thomas

Publication type:

Article

The chromodomains of CHD1 are critical for enzymatic activity but less important for chromatin localization.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 8, p. 3103, doi. 10.1093/nar/gkq1298

By:

Morettini, Stefano;
Tribus, Martin;
Zeilner, Anette;
Sebald, Johanna;
Campo-Fernandez, Beatriz;
Scheran, Gabriele;
Wörle, Hildegard;
Podhraski, Valerie;
Fyodorov, Dmitry V.;
Lusser, Alexandra

Publication type:

Article

Rescue of non-sense mutated p53 tumor suppressor gene by aminoglycosides.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 8, p. 3350, doi. 10.1093/nar/gkq1277

By:

Floquet, Célia;
Deforges, Jules;
Rousset, Jean-Pierre;
Bidou, Laure

Publication type:

Article

Thermophoretic melting curves quantify the conformation and stability of RNA and DNA.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 8, p. e52, doi. 10.1093/nar/gkr035

By:

Wienken, Christoph J.;
Baaske, Philipp;
Duhr, Stefan;
Braun, Dieter

Publication type:

Article

Folding of the lysine riboswitch: importance of peripheral elements for transcriptional regulation.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 8, p. 3373, doi. 10.1093/nar/gkq1247

By:

Blouin, Simon;
Chinnappan, Raja;
Lafontaine, Daniel A.

Publication type:

Article

Different sequence signatures in the upstream regions of plant and animal tRNA genes shape distinct modes of regulation.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 8, p. 3331, doi. 10.1093/nar/gkq1257

By:

Zhang, Gong;
Lukoszek, Radoslaw;
Mueller-Roeber, Bernd;
Ignatova, Zoya

Publication type:

Article

A novel regulatory circuit in base excision repair involving AP endonuclease 1, Creb1 and DNA polymerase β.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 8, p. 3156, doi. 10.1093/nar/gkq1142

By:

Pei, De-Sheng;
Yang, Xiao-Jie;
Liu, Wei;
Guikema, Jeroen E. J.;
Schrader, Carol E.;
Strauss, Phyllis R.

Publication type:

Article

Formation of stress-specific p53 binding patterns is influenced by chromatin but not by modulation of p53 binding affinity to response elements†.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 8, p. 3053, doi. 10.1093/nar/gkq1209

By:

Millau, Jean-François;
Bandele, Omari J.;
Perron, Josiann;
Bastien, Nathalie;
Bouchard, Éric F.;
Gaudreau, Luc;
Bell, Douglas A.;
Drouin, Régen

Publication type:

Article

Nucleic Acids Research.

Published in:: Nucleic Acids Research, 2011, v. 39, n. 8, p. i, doi. 10.1093/nar/gkr327
Publication type:: Article

Efficient detection of RNA–protein interactions using tethered RNAs.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 8, p. e53, doi. 10.1093/nar/gkq1316

By:

Iioka, Hidekazu;
Loiselle, David;
Haystead, Timothy A.;
Macara, Ian G.

Publication type:

Article

c-MYC coordinately regulates ribosomal gene chromatin remodeling and Pol I availability during granulocyte differentiation.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 8, p. 3267, doi. 10.1093/nar/gkq1205

By:

Poortinga, Gretchen;
Wall, Meaghan;
Sanij, Elaine;
Siwicki, Kasia;
Ellul, Jason;
Brown, Daniel;
Holloway, Timothy P.;
Hannan, Ross D.;
McArthur, Grant A.

Publication type:

Article

Conservation defines functional motifs in the squint/nodal-related 1 RNA dorsal localization element.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 8, p. 3340, doi. 10.1093/nar/gkq1185

By:

Gilligan, Patrick C.;
Kumari, Pooja;
Lim, Shimin;
Cheong, Albert;
Chang, Alex;
Sampath, Karuna

Publication type:

Article

Insights into plant biomass conversion from the genome of the anaerobic thermophilic bacterium Caldicellulosiruptor bescii DSM 6725.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 8, p. 3240, doi. 10.1093/nar/gkq1281

By:

Dam, Phuongan;
Kataeva, Irina;
Yang, Sung-Jae;
Zhou, Fengfeng;
Yin, Yanbin;
Chou, Wenchi;
Poole, Farris L.;
Westpheling, Janet;
Hettich, Robert;
Giannone, Richard;
Lewis, Derrick L.;
Kelly, Robert;
Gilbert, Harry J.;
Henrissat, Bernard;
Xu, Ying;
Adams, Michael W. W.

Publication type:

Article

Pre-replication complex proteins assemble at regions of low nucleosome occupancy within the Chinese hamster dihydrofolate reductase initiation zone.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 8, p. 3141, doi. 10.1093/nar/gkq1276

By:

Lubelsky, Yoav;
Sasaki, Takayo;
Kuipers, Marjorie A.;
Lucas, Isabelle;
Le Beau, Michelle M.;
Carignon, Sandra;
Debatisse, Michelle;
Prinz, Joseph A.;
Dennis, Jonathan H.;
Gilbert, David M.

Publication type:

Article

Transition dynamics and selection of the distinct S-DNA and strand unpeeling modes of double helix overstretching.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 8, p. 3473, doi. 10.1093/nar/gkq1278

By:

Fu, Hongxia;
Chen, Hu;
Zhang, Xinghua;
Qu, Yuanyuan;
Marko, John F.;
Yan, Jie

Publication type:

Article

Expression of CD44 3′-untranslated region regulates endogenous microRNA functions in tumorigenesis and angiogenesis.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 8, p. 3026, doi. 10.1093/nar/gkq1003

By:

Jeyapalan, Zina;
Deng, Zhaoqun;
Shatseva, Tatiana;
Fang, Ling;
He, Chengyan;
Yang, Burton B.

Publication type:

Article

Subscriptions.

Published in:: Nucleic Acids Research, 2011, v. 39, n. 8, p. iii, doi. 10.1093/nar/gkr329
Publication type:: Article

Selective interactions of boundaries with upstream region of Abd-B promoter in Drosophila bithorax complex and role of dCTCF in this process.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 8, p. 3042, doi. 10.1093/nar/gkq1248

By:

Kyrchanova, Olga;
Ivlieva, Tatiana;
Toshchakov, Stepan;
Parshikov, Alexander;
Maksimenko, Oksana;
Georgiev, Pavel

Publication type:

Article

Structure-based prediction of RNA-binding domains and RNA-binding sites and application to structural genomics targets.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 8, p. 3017, doi. 10.1093/nar/gkq1266

By:

Zhao, Huiying;
Yang, Yuedong;
Zhou, Yaoqi

Publication type:

Article