Works matching IS 03051048 AND DT 2011 AND VI 39 AND IP 7

Results: 53

CHILD: a new tool for detecting low-abundance insertions and deletions in standard sequence traces.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 7, p. e47, doi. 10.1093/nar/gkq1354

By:

Zhidkov, Ilia;
Cohen, Raphael;
Geifman, Nophar;
Mishmar, Dan;
Rubin, Eitan

Publication type:

Article

Characterization of Aquifex aeolicus ribonuclease III and the reactivity epitopes of its pre-ribosomal RNA substrates.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 7, p. 2756, doi. 10.1093/nar/gkq1030

By:

Shi, Zhongjie;
Nicholson, Rhonda H.;
Jaggi, Ritu;
Nicholson, Allen W.

Publication type:

Article

Endogenous ribosomal frameshift signals operate as mRNA destabilizing elements through at least two molecular pathways in yeast.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 7, p. 2799, doi. 10.1093/nar/gkq1220

By:

Belew, Ashton T.;
Advani, Vivek M.;
Dinman, Jonathan D.

Publication type:

Article

Biochemical behavior of N-oxidized cytosine and adenine bases in DNA polymerase-mediated primer extension reactions.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 7, p. 2995, doi. 10.1093/nar/gkq914

By:

Tsunoda, Hirosuke;
Kudo, Tomomi;
Masaki, Yoshiaki;
Ohkubo, Akihiro;
Seio, Kohji;
Sekine, Mitsuo

Publication type:

Article

Evolution of eukaryal tRNA-guanine transglycosylase: insight gained from the heterocyclic substrate recognition by the wild-type and mutant human and Escherichia coli tRNA-guanine transglycosylases.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 7, p. 2834, doi. 10.1093/nar/gkq1188

By:

Chen, Yi-Chen;
Brooks, Allen F.;
Goodenough-Lashua, DeeAnne M.;
Kittendorf, Jeffrey D.;
Showalter, Hollis D.;
Garcia, George A.

Publication type:

Article

Design of small molecule-responsive microRNAs based on structural requirements for Drosha processing.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 7, p. 2981, doi. 10.1093/nar/gkq954

By:

Beisel, Chase L.;
Chen, Yvonne Y.;
Culler, Stephanie J.;
Hoff, Kevin G.;
Smolke, Christina D.

Publication type:

Article

Reconstitution of human RNA interference in budding yeast.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 7, p. e43, doi. 10.1093/nar/gkq1321

By:

Suk, Kyoungho;
Choi, Jihye;
Suzuki, Yo;
Ozturk, Sedide B.;
Mellor, Joseph C.;
Wong, Koon Ho;
MacKay, Joanna L.;
Gregory, Richard I.;
Roth, Frederick P.

Publication type:

Article

Interpreting protein/DNA interactions: distinguishing specific from non-specific and electrostatic from non-electrostatic components.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 7, p. 2483, doi. 10.1093/nar/gkq984

By:

Privalov, Peter L.;
Dragan, Anatoly I.;
Crane-Robinson, Colyn

Publication type:

Article

Cyclin E is recruited to the nuclear matrix during differentiation, but is not recruited in cancer cells.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 7, p. 2671, doi. 10.1093/nar/gkq1190

By:

Munkley, Jennifer;
Copeland, Nikki A.;
Moignard, Victoria;
Knight, John R. P.;
Greaves, Erin;
Ramsbottom, Simon A.;
Pownall, Mary E.;
Southgate, Jennifer;
Ainscough, Justin F.-X.;
Coverley, Dawn

Publication type:

Article

RSC remodeling of oligo-nucleosomes: an atomic force microscopy study.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 7, p. 2571, doi. 10.1093/nar/gkq1254

By:

Montel, Fabien;
Castelnovo, Martin;
Menoni, Hervé;
Angelov, Dimitar;
Dimitrov, Stefan;
Faivre-Moskalenko, Cendrine

Publication type:

Article

Subscriptions.

Published in:: Nucleic Acids Research, 2011, v. 39, n. 7, p. iii, doi. 10.1093/nar/gkr270
Publication type:: Article

Molecular anatomy of the Streptococcus pyogenes pSM19035 partition and segrosome complexes.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 7, p. 2624, doi. 10.1093/nar/gkq1245

By:

Soberón, Nora E.;
Lioy, Virginia S.;
Pratto, Florencia;
Volante, Andrea;
Alonso, Juan C.

Publication type:

Article

A novel compression tool for efficient storage of genome resequencing data.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 7, p. e45, doi. 10.1093/nar/gkr009

By:

Wang, Congmao;
Zhang, Dabing

Publication type:

Article

Stress induced gene expression: a direct role for MAPKAP kinases in transcriptional activation of immediate early genes.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 7, p. 2503, doi. 10.1093/nar/gkq1178

By:

Ronkina, N.;
Menon, M. B.;
Schwermann, J.;
Arthur, J. S. C.;
Legault, H.;
Telliez, J.-B.;
Kayyali, U. S.;
Nebreda, A. R.;
Kotlyarov, A.;
Gaestel, M.

Publication type:

Article

A simple and efficient method to search for selected primary transcripts: non-coding and antisense RNAs in the human pathogen Enterococcus faecalis.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 7, p. e46, doi. 10.1093/nar/gkr012

By:

Fouquier d’Hérouel, Aymeric;
Wessner, Françoise;
Halpern, David;
Ly-Vu, Joseph;
Kennedy, Sean P.;
Serror, Pascale;
Aurell, Erik;
Repoila, Francis

Publication type:

Article

Cell stress is related to re-localization of Argonaute 2 and to decreased RNA interference in human cells.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 7, p. 2727, doi. 10.1093/nar/gkq1216

By:

Detzer, Anke;
Engel, Christina;
Wünsche, Winfried;
Sczakiel, Georg

Publication type:

Article

Divergent GW182 functional domains in the regulation of translational silencing.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 7, p. 2534, doi. 10.1093/nar/gkq1099

By:

Yao, Bing;
Li, Songqing;
Jung, Hyun Min;
Lian, Shang L.;
Abadal, Grant X.;
Han, Frank;
Fritzler, Marvin J.;
Chan, Edward K. L.

Publication type:

Article

The docking domain of histone H2A is required for H1 binding and RSC-mediated nucleosome remodeling.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 7, p. 2559, doi. 10.1093/nar/gkq1174

By:

Shukla, Manu Shubhdarshan;
Syed, Sajad Hussain;
Goutte-Gattat, Damien;
Richard, John Lalith Charles;
Montel, Fabien;
Hamiche, Ali;
Travers, Andrew;
Faivre-Moskalenko, Cendrine;
Bednar, Jan;
Hayes, Jeffrey J.;
Angelov, Dimitar;
Dimitrov, Stefan

Publication type:

Article

Translation on demand by a simple RNA-based thermosensor.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 7, p. 2855, doi. 10.1093/nar/gkq1252

By:

Kortmann, Jens;
Sczodrok, Simon;
Rinnenthal, Jörg;
Schwalbe, Harald;
Narberhaus, Franz

Publication type:

Article

Nuclear mRNA quality control in yeast is mediated by Nrd1 co-transcriptional recruitment, as revealed by the targeting of Rho-induced aberrant transcripts.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 7, p. 2809, doi. 10.1093/nar/gkq1192

By:

Honorine, Romy;
Mosrin-Huaman, Christine;
Hervouet-Coste, Nadège;
Libri, Domenico;
Rahmouni, A. Rachid

Publication type:

Article

Differential modes of DNA binding by mismatch uracil DNA glycosylase from Escherichia coli: implications for abasic lesion processing and enzyme communication in the base excision repair pathway.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 7, p. 2593, doi. 10.1093/nar/gkq913

By:

Grippon, Seden;
Zhao, Qiyuan;
Robinson, Tom;
Marshall, Jacqueline J. T.;
O’Neill, Rory J.;
Manning, Hugh;
Kennedy, Gordon;
Dunsby, Christopher;
Neil, Mark;
Halford, Stephen E.;
French, Paul M. W.;
Baldwin, Geoff S.

Publication type:

Article

Protein flexibility directs DNA recognition by the papillomavirus E2 proteins.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 7, p. 2969, doi. 10.1093/nar/gkq1217

By:

Brown, Craig;
Campos-León, Karen;
Strickland, Madeleine;
Williams, Christopher;
Fairweather, Victoria;
Brady, R. Leo;
Crump, Matthew P.;
Gaston, Kevin

Publication type:

Article

Cross-validated methods for promoter/transcription start site mapping in SL trans-spliced genes, established using the Ciona intestinalis troponin I gene.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 7, p. 2638, doi. 10.1093/nar/gkq1151

By:

Khare, Parul;
Mortimer, Sandra I.;
Cleto, Cynthia L.;
Okamura, Kohji;
Suzuki, Yutaka;
Kusakabe, Takehiro;
Nakai, Kenta;
Meedel, Thomas H.;
Hastings, Kenneth E. M.

Publication type:

Article

Highly parallel SNP genotyping reveals high-resolution landscape of mono-allelic Ube3a expression associated with locus-wide antisense transcription.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 7, p. 2649, doi. 10.1093/nar/gkq1201

By:

Numata, Koji;
Kohama, Chihiro;
Abe, Kuniya;
Kiyosawa, Hidenori

Publication type:

Article

Tracking F plasmid TraI relaxase processing reactions provides insight into F plasmid transfer.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 7, p. 2658

By:

Dostál, Lubomír;
Shao, Sichen;
Schildbach, Joel F.

Publication type:

Article

Regulatory modules function in a non-autonomous manner to control transcription of the mbp gene.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 7, p. 2548, doi. 10.1093/nar/gkq1160

By:

Dib, Samar;
Denarier, Eric;
Dionne, Nancy;
Beaudoin, Melissa;
Friedman, Hana H.;
Peterson, Alan C.

Publication type:

Article

Engineering cooperative tecto–RNA complexes having programmable stoichiometries.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 7, p. 2903, doi. 10.1093/nar/gkq1231

By:

Novikova, Irina V.;
Hassan, Bachar H.;
Mirzoyan, Marina G.;
Leontis, Neocles B.

Publication type:

Article

Regulation by interdomain communication of a headful packaging nuclease from bacteriophage T4.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 7, p. 2742, doi. 10.1093/nar/gkq1191

By:

Ghosh-Kumar, Manjira;
Alam, Tanfis I.;
Draper, Bonnie;
Stack, John D.;
Rao, Venigalla B.

Publication type:

Article

A new framework for identifying cis-regulatory motifs in prokaryotes.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 7, p. e42, doi. 10.1093/nar/gkq948

By:

Li, Guojun;
Liu, Bingqiang;
Ma, Qin;
Xu, Ying

Publication type:

Article

MiR-124 regulates early neurogenesis in the optic vesicle and forebrain, targeting NeuroD1.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 7, p. 2869, doi. 10.1093/nar/gkq904

By:

Liu, Kaili;
Liu, Ying;
Mo, Weichuan;
Qiu, Rong;
Wang, Xiumei;
Wu, Jane Y.;
He, Rongqiao

Publication type:

Article

Structural insights into catalytic and substrate binding mechanisms of the strategic EndA nuclease from Streptococcus pneumoniae.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 7, p. 2943, doi. 10.1093/nar/gkq1152

By:

Moon, Andrea F.;
Midon, Marika;
Meiss, Gregor;
Pingoud, Alfred;
London, Robert E.;
Pedersen, Lars C.

Publication type:

Article

Automethylation of CARM1 allows coupling of transcription and mRNA splicing.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 7, p. 2717, doi. 10.1093/nar/gkq1246

By:

Kuhn, Peter;
Chumanov, Rob;
Wang, Yidan;
Ge, Ying;
Burgess, Richard R.;
Xu, Wei

Publication type:

Article

Identification and analysis of seven H2O2-responsive miRNAs and 32 new miRNAs in the seedlings of rice (Oryza sativa L. ssp. indica).

Published in:

Nucleic Acids Research, 2011, v. 39, n. 7, p. 2821, doi. 10.1093/nar/gkq1047

By:

Li, Tian;
Li, Hui;
Zhang, Yun-Xiao;
Liu, Jin-Yuan

Publication type:

Article

Sld2 binds to origin single-stranded DNA and stimulates DNA annealing.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 7, p. 2580, doi. 10.1093/nar/gkq1222

By:

Kanter, Diane M.;
Kaplan, Daniel L.

Publication type:

Article

COMODO: an adaptive coclustering strategy to identify conserved coexpression modules between organisms.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 7, p. e41, doi. 10.1093/nar/gkq1275

By:

Zarrineh, Peyman;
Fierro, Ana C;
Sánchez-Rodríguez, Aminael;
De Moor, Bart;
Engelen, Kristof;
Marchal, Kathleen

Publication type:

Article

Replication fork stalling by bulky DNA damage: localization at active origins and checkpoint modulation.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 7, p. 2610, doi. 10.1093/nar/gkq1215

By:

Minca, Eugen C.;
Kowalski, David

Publication type:

Article

Expression of ribosomal protein L22e family members in Drosophila melanogaster: rpL22-like is differentially expressed and alternatively spliced.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 7, p. 2701, doi. 10.1093/nar/gkq1218

By:

Kearse, Michael G.;
Chen, Alex S.;
Ware, Vassie C.

Publication type:

Article

Intracellular localization and splicing regulation of FUS/TLS are variably affected by amyotrophic lateral sclerosis-linked mutations.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 7, p. 2781, doi. 10.1093/nar/gkq1162

By:

Kino, Yoshihiro;
Washizu, Chika;
Aquilanti, Elisa;
Okuno, Misako;
Kurosawa, Masaru;
Yamada, Mizuki;
Doi, Hiroshi;
Nukina, Nobuyuki

Publication type:

Article

Comparative analysis of non-autonomous effects of tasiRNAs and miRNAs in Arabidopsis thaliana.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 7, p. 2880, doi. 10.1093/nar/gkq1240

By:

Felippes, Felipe Fenselau de;
Ott, Felix;
Weigel, Detlef

Publication type:

Article

The group II intron ribonucleoprotein precursor is a large, loosely packed structure.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 7, p. 2845, doi. 10.1093/nar/gkq1202

By:

Huang, Tao;
Shaikh, Tanvir R.;
Gupta, Kushol;
Contreras-Martin, Lydia M.;
Grassucci, Robert A.;
Van Duyne, Gregory D.;
Frank, Joachim;
Belfort, Marlene

Publication type:

Article

A novel function of the mitochondrial transcription factor Mtf1 in fission yeast; Mtf1 regulates the nuclear transcription of srk1.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 7, p. 2690, doi. 10.1093/nar/gkq1179

By:

Sun, Wenxia;
Wang, Zhe;
Jiang, Hengyi;
Zhang, Jing;
Bähler, Jürg;
Chen, Dongrong;
Murchie, Alastair I. H.

Publication type:

Article

Two transcription factors are necessary for iron homeostasis in a salt-dwelling archaeon.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 7, p. 2519, doi. 10.1093/nar/gkq1211

By:

Schmid, Amy K.;
Pan, Min;
Sharma, Kriti;
Baliga, Nitin S.

Publication type:

Article

Regulation of the small regulatory RNA MicA by ribonuclease III: a target-dependent pathway.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 7, p. 2918, doi. 10.1093/nar/gkq1239

By:

Viegas, Sandra C.;
Silva, Inês J.;
Saramago, Margarida;
Domingues, Susana;
Arraiano, Cecília M.

Publication type:

Article

Integrative analysis of genomic, functional and protein interaction data predicts long-range enhancer-target gene interactions.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 7, p. 2492

By:

Rödelsperger, Christian;
Guo, Gao;
Kolanczyk, Mateusz;
Pletschacher, Angelika;
Köhler, Sebastian;
Bauer, Sebastian;
Schulz, Marcel H.;
Robinson, Peter N.

Publication type:

Article

A high-throughput DNA methylation analysis of a single cell.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 7, p. e44, doi. 10.1093/nar/gkq1357

By:

Kantlehner, Martin;
Kirchner, Roland;
Hartmann, Petra;
Ellwart, Joachim W.;
Alunni-Fabbroni, Marianna;
Schumacher, Axel

Publication type:

Article

Identification of MBNL1 and MBNL3 domains required for splicing activation and repression.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 7, p. 2769, doi. 10.1093/nar/gkq1155

By:

Grammatikakis, Ioannis;
Goo, Young-Hwa;
Echeverria, Gloria V.;
Cooper, Thomas A.

Publication type:

Article

Structures of carbon catabolite protein A–(HPr-Ser46-P) bound to diverse catabolite response element sites reveal the basis for high-affinity binding to degenerate DNA operators.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 7, p. 2931, doi. 10.1093/nar/gkq1177

By:

Schumacher, Maria A.;
Sprehe, Mareen;
Bartholomae, Maike;
Hillen, Wolfgang;
Brennan, Richard G.

Publication type:

Article

A unique transcriptome: 1782 positions of RNA editing alter 1406 codon identities in mitochondrial mRNAs of the lycophyte Isoetes engelmannii.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 7, p. 2890, doi. 10.1093/nar/gkq1227

By:

Grewe, Felix;
Herres, Stefan;
Viehöver, Prisca;
Polsakiewicz, Monika;
Weisshaar, Bernd;
Knoop, Volker

Publication type:

Article

Quantitative analysis of condensation/decondensation status of pDNA in the nuclear sub-domains by QD-FRET.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 7, p. e48, doi. 10.1093/nar/gkq1327

By:

Shaheen, Sharif M.;
Akita, Hidetaka;
Yamashita, Atsushi;
Katoono, Ryo;
Yui, Nobuhiko;
Biju, Vasudevanpillai;
Ishikawa, Mitsuru;
Harashima, Hideyoshi

Publication type:

Article

USP7/HAUSP stimulates repair of oxidative DNA lesions.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 7, p. 2604, doi. 10.1093/nar/gkq1210

By:

Khoronenkova, Svetlana V.;
Dianova, Irina I.;
Parsons, Jason L.;
Dianov, Grigory L.

Publication type:

Article