Works matching IS 03051048 AND DT 2011 AND VI 39 AND IP 6

Results: 50

Protein inactivation in mycobacteria by controlled proteolysis and its application to deplete the beta subunit of RNA polymerase.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 6, p. 2210, doi. 10.1093/nar/gkq1149

By:

Kim, Jee-Hyun;
Wei, Jun-Rong;
Wallach, Joshua B.;
Robbins, Rebekkah S.;
Rubin, Eric J.;
Schnappinger, Dirk

Publication type:

Article

α-MSH regulates intergenic splicing of MC1R and TUBB3 in human melanocytes.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 6, p. 2378, doi. 10.1093/nar/gkq1125

By:

Dalziel, Martin;
Kolesnichenko, Marina;
das Neves, Ricardo Pires;
Iborra, Francisco;
Goding, Colin;
Furger, André

Publication type:

Article

Critical association of ncRNA with introns.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 6, p. 2357, doi. 10.1093/nar/gkq1080

By:

Rearick, David;
Prakash, Ashwin;
McSweeny, Andrew;
Shepard, Samuel S.;
Fedorova, Larisa;
Fedorov, Alexei

Publication type:

Article

The mRNA cap-binding complex stimulates the formation of pre-initiation complex at the promoter via its interaction with Mot1p in vivo.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 6, p. 2188, doi. 10.1093/nar/gkq1029

By:

Lahudkar, Shweta;
Shukla, Abhijit;
Bajwa, Pratibha;
Durairaj, Geetha;
Stanojevic, Nadia;
Bhaumik, Sukesh R.

Publication type:

Article

Change of tRNA identity leads to a divergent orthogonal histidyl-tRNA synthetase/tRNAHis pair.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 6, p. 2286, doi. 10.1093/nar/gkq1176

By:

Yuan, Jing;
Gogakos, Tasos;
Babina, Arianne M.;
Söll, Dieter;
Randau, Lennart

Publication type:

Article

CtIP and MRN promote non-homologous end-joining of etoposide-induced DNA double-strand breaks in G1.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 6, p. 2144, doi. 10.1093/nar/gkq1175

By:

Quennet, Verena;
Beucher, Andrea;
Barton, Olivia;
Takeda, Shunichi;
Löbrich, Markus

Publication type:

Article

Single-Molecule characterization of oligomerization kinetics and equilibria of the tumor suppressor p53.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 6, p. 2294, doi. 10.1093/nar/gkq800

By:

Rajagopalan, Sridharan;
Huang, Fang;
Fersht, Alan R.

Publication type:

Article

7SK small nuclear RNA directly affects HMGA1 function in transcription regulation.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 6, p. 2057, doi. 10.1093/nar/gkq1153

By:

Eilebrecht, Sebastian;
Brysbaert, Guillaume;
Wegert, Thomas;
Urlaub, Henning;
Benecke, Bernd-Joachim;
Benecke, Arndt

Publication type:

Article

Trans-cleaving hammerhead ribozymes with tertiary stabilizing motifs: in vitro and in vivo activity against a structured viroid RNA.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 6, p. 2432, doi. 10.1093/nar/gkq1051

By:

Carbonell, Alberto;
Flores, Ricardo;
Gago, Selma

Publication type:

Article

Enhanced anti-HIV-1 activity of G-quadruplexes comprising locked nucleic acids and intercalating nucleic acids.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 6, p. 2470, doi. 10.1093/nar/gkq1133

By:

Pedersen, Erik B.;
Nielsen, Jakob T.;
Nielsen, Claus;
Filichev, Vyacheslav V.

Publication type:

Article

Epigenetic control of a VDR-governed feed-forward loop that regulates p21(waf1/cip1) expression and function in non-malignant prostate cells.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 6, p. 2045, doi. 10.1093/nar/gkq875

By:

Thorne, James L.;
Maguire, Orla;
Doig, Craig L.;
Battaglia, Sebastiano;
Fehr, Leah;
Sucheston, Lara E.;
Heinaniemi, Merja;
O’Neill, Laura P.;
McCabe, Christopher J.;
Turner, Bryan M.;
Carlberg, Carsten;
Campbell, Moray J.

Publication type:

Article

GiRaF: robust, computational identification of influenza reassortments via graph mining.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 6, p. e34, doi. 10.1093/nar/gkq1232

By:

Nagarajan, Niranjan;
Kingsford, Carl

Publication type:

Article

Subscriptions.

Published in:: Nucleic Acids Research, 2011, v. 39, n. 6, p. iii, doi. 10.1093/nar/gkr212
Publication type:: Article

The highly conserved eukaryotic DRG factors are required for efficient translation in a manner redundant with the putative RNA helicase Slh1.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 6, p. 2221, doi. 10.1093/nar/gkq898

By:

Daugeron, Marie-Claire;
Prouteau, Manoël;
Lacroute, François;
Séraphin, Bertrand

Publication type:

Article

Mismatch-repair protein MSH6 is associated with Ku70 and regulates DNA double-strand break repair.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 6, p. 2130, doi. 10.1093/nar/gkq1095

By:

Shahi, Ankita;
Lee, Jung-Hee;
Kang, Yoonsung;
Lee, Sung Haeng;
Hyun, Jin-Won;
Chang, In-Youb;
Jun, Jae-Yeoul;
You, Ho Jin

Publication type:

Article

Stoichiometry and affinity for thymine DNA glycosylase binding to specific and nonspecific DNA.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 6, p. 2319, doi. 10.1093/nar/gkq1164

By:

Morgan, Michael T.;
Maiti, Atanu;
Fitzgerald, Megan E.;
Drohat, Alexander C.

Publication type:

Article

Concentration-dependent exchange accelerates turnover of proteins bound to double-stranded DNA.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 6, p. 2249, doi. 10.1093/nar/gkq1140

By:

Graham, John S.;
Johnson, Reid C.;
Marko, John F.

Publication type:

Article

PAK1IP1, a ribosomal stress-induced nucleolar protein, regulates cell proliferation via the p53–MDM2 loop.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 6, p. 2234, doi. 10.1093/nar/gkq1117

By:

Yu, Weishi;
Qiu, Zhongwei;
Gao, Na;
Wang, Liren;
Cui, Hengxiang;
Qian, Yu;
Jiang, Li;
Luo, Jian;
Yi, Zhengfang;
Lu, Hua;
Li, Dali;
Liu, Mingyao

Publication type:

Article

Structural insight into the functional mechanism of Nep1/Emg1 N1-specific pseudouridine methyltransferase in ribosome biogenesis.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 6, p. 2445, doi. 10.1093/nar/gkq1131

By:

Thomas, Seth R.;
Keller, Christopher A.;
Szyk, Agnieszka;
Cannon, Joe R.;
LaRonde-LeBlanc, Nicole A.

Publication type:

Article

Chromatin and DNA methylation dynamics during retinoic acid-induced RET gene transcriptional activation in neuroblastoma cells.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 6, p. 1993, doi. 10.1093/nar/gkq864

By:

Angrisano, T.;
Sacchetti, S.;
Natale, F.;
Cerrato, A.;
Pero, R.;
Keller, S.;
Peluso, S.;
Perillo, B.;
Avvedimento, V. E.;
Fusco, A.;
Bruni, C. B.;
Lembo, F.;
Santoro, M.;
Chiariotti, L.

Publication type:

Article

Phosphorylation of human Argonaute proteins affects small RNA binding.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 6, p. 2330, doi. 10.1093/nar/gkq1032

By:

Rüdel, Sabine;
Wang, Yanli;
Lenobel, René;
Körner, Roman;
Hsiao, He-Hsuan;
Urlaub, Henning;
Patel, Dinshaw;
Meister, Gunter

Publication type:

Article

The AddAB helicase–nuclease catalyses rapid and processive DNA unwinding using a single Superfamily 1A motor domain.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 6, p. 2271, doi. 10.1093/nar/gkq1124

By:

Yeeles, Joseph T.P.;
Gwynn, Emma J.;
Webb, Martin R.;
Dillingham, Mark S.

Publication type:

Article

A multivalent DNA aptamer specific for the B-cell receptor on human lymphoma and leukemia.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 6, p. 2458, doi. 10.1093/nar/gkq996

By:

Mallikaratchy, Prabodhika R.;
Ruggiero, Alessandro;
Gardner, Jeffrey R.;
Kuryavyi, Vitaly;
Maguire, William F.;
Heaney, Mark L.;
McDevitt, Michael R.;
Patel, Dinshaw J.;
Scheinberg, David A.

Publication type:

Article

Linear Streptomyces plasmids form superhelical circles through interactions between their terminal proteins.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 6, p. 2165, doi. 10.1093/nar/gkq1204

By:

Tsai, Hsiu-Hui;
Huang, Chih-Hung;
Tessmer, Ingrid;
Erie, Dorothy A.;
Chen, Carton W.

Publication type:

Article

High-throughput mapping of protein occupancy identifies functional elements without the restriction of a candidate factor approach.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 6, p. e33, doi. 10.1093/nar/gkq1213

By:

Ferraris, L.;
Stewart, A. P.;
Gemberling, M. P.;
Reid, D. C.;
Lapadula, M. J.;
Thompson, W. A.;
Fairbrother, W. G.

Publication type:

Article

A piggyBac transposon-based mutagenesis system for the fission yeast Schizosaccharomyces pombe.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 6, p. e40, doi. 10.1093/nar/gkq1358

By:

Li, Jun;
Zhang, Jia-Min;
Li, Xin;
Suo, Fang;
Zhang, Mei-Jun;
Hou, Wenru;
Han, Jinghua;
Du, Li-Lin

Publication type:

Article

eIF4G stimulates the activity of the DEAD box protein eIF4A by a conformational guidance mechanism.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 6, p. 2260, doi. 10.1093/nar/gkq1127

By:

Hilbert, Manuel;
Kebbel, Fabian;
Gubaev, Airat;
Klostermeier, Dagmar

Publication type:

Article

Extensive role of the general regulatory factors, Abf1 and Rap1, in determining genome-wide chromatin structure in budding yeast.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 6, p. 2032, doi. 10.1093/nar/gkq1161

By:

Ganapathi, Mythily;
Palumbo, Michael J.;
Ansari, Suraiya A.;
He, Qiye;
Tsui, Kyle;
Nislow, Corey;
Morse, Randall H.

Publication type:

Article

Ultraconserved cDNA segments in the human transcriptome exhibit resistance to folding and implicate function in translation and alternative splicing.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 6, p. 1967, doi. 10.1093/nar/gkq949

By:

Sathirapongsasuti, J. Fah;
Sathira, Nuankanya;
Suzuki, Yutaka;
Huttenhower, Curtis;
Sugano, Sumio

Publication type:

Article

Importance of the proline-rich multimerization domain on the oligomerization and nucleic acid binding properties of HIV-1 Vif.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 6, p. 2404, doi. 10.1093/nar/gkq979

By:

Bernacchi, Serena;
Mercenne, Gaëlle;
Tournaire, Clémence;
Marquet, Roland;
Paillart, Jean-Christophe

Publication type:

Article

Genome-wide detection of a TFIID localization element from an initial human disease mutation.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 6, p. 2175, doi. 10.1093/nar/gkq1035

By:

Yang, Mary Q.;
Laflamme, Karina;
Gotea, Valer;
Joiner, Clinton H.;
Seidel, Nancy E.;
Wong, Clara;
Petrykowska, Hanna M.;
Lichtenberg, Jens;
Lee, Stephen;
Welch, Lonnie;
Gallagher, Patrick G.;
Bodine, David M.;
Elnitski, Laura

Publication type:

Article

Direct and indirect effects of H-NS and Fis on global gene expression control in Escherichia coli.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 6, p. 2073, doi. 10.1093/nar/gkq934

By:

Kahramanoglou, Christina;
Seshasayee, Aswin S. N.;
Prieto, Ana I.;
Ibberson, David;
Schmidt, Sabine;
Zimmermann, Jurgen;
Benes, Vladimir;
Fraser, Gillian M.;
Luscombe, Nicholas M.

Publication type:

Article

Characterization of the relationship between integrase, excisionase and antirepressor activities associated with a superinfecting Shiga toxin encoding bacteriophage.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 6, p. 2116, doi. 10.1093/nar/gkq923

By:

Fogg, P. C. M.;
Rigden, D. J.;
Saunders, J. R.;
McCarthy, A. J.;
Allison, H. E.

Publication type:

Article

TRAP binding to the Bacillus subtilis trp leader region RNA causes efficient transcription termination at a weak intrinsic terminator.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 6, p. 2092, doi. 10.1093/nar/gkq965

By:

Potter, Kristine D.;
Merlino, Natalie M.;
Jacobs, Timothy;
Gollnick, Paul

Publication type:

Article

A distinct first replication cycle of DNA introduced in mammalian cells.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 6, p. 2103, doi. 10.1093/nar/gkq903

By:

Chandok, Gurangad S.;
Kapoor, Kalvin K.;
Brick, Rachel M.;
Sidorova, Julia M.;
Krasilnikova, Maria M.

Publication type:

Article

Improved nucleotide selectivity and termination of 3′-OH unblocked reversible terminators by molecular tuning of 2-nitrobenzyl alkylated HOMedU triphosphates.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 6, p. e39, doi. 10.1093/nar/gkq1293

By:

Litosh, Vladislav A.;
Wu, Weidong;
Stupi, Brian P.;
Wang, Jinchun;
Morris, Sidney E.;
Hersh, Megan N.;
Metzker, Michael L.

Publication type:

Article

Arabidopsis thaliana telomeres exhibit euchromatic features.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 6, p. 2007, doi. 10.1093/nar/gkq1119

By:

Vaquero-Sedas, María I.;
Gámez-Arjona, Francisco M.;
Vega-Palas, Miguel A.

Publication type:

Article

Nucleic Acids Research.

Published in:: Nucleic Acids Research, 2011, v. 39, n. 6, p. ii, doi. 10.1093/nar/gkr210
Publication type:: Article

Pseudouridine at position 55 in tRNA controls the contents of other modified nucleotides for low-temperature adaptation in the extreme-thermophilic eubacterium Thermus thermophilus.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 6, p. 2304, doi. 10.1093/nar/gkq1180

By:

Ishida, Kazuo;
Kunibayashi, Takashi;
Tomikawa, Chie;
Ochi, Anna;
Kanai, Tamotsu;
Hirata, Akira;
Iwashita, Chikako;
Hori, Hiroyuki

Publication type:

Article

Cooperation of RAD51 and RAD54 in regression of a model replication fork.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 6, p. 2153, doi. 10.1093/nar/gkq1139

By:

Bugreev, Dmitry V.;
Rossi, Matthew J.;
Mazin, Alexander V.

Publication type:

Article

NLP is a novel transcription regulator involved in VSG expression site control in Trypanosoma brucei.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 6, p. 2018, doi. 10.1093/nar/gkq950

By:

Narayanan, Mani Shankar;
Kushwaha, Manish;
Ersfeld, Klaus;
Fullbrook, Alexander;
Stanne, Tara M.;
Rudenko, Gloria

Publication type:

Article

T-lex: a program for fast and accurate assessment of transposable element presence using next-generation sequencing data.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 6, p. e36, doi. 10.1093/nar/gkq1291

By:

Fiston-Lavier, Anna-Sophie;
Carrigan, Matthew;
Petrov, Dmitri A.;
González, Josefa

Publication type:

Article

seqMINER: an integrated ChIP-seq data interpretation platform.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 6, p. e35, doi. 10.1093/nar/gkq1287

By:

Ye, Tao;
Krebs, Arnaud R.;
Choukrallah, Mohamed-Amin;
Keime, Celine;
Plewniak, Frederic;
Davidson, Irwin;
Tora, Laszlo

Publication type:

Article

Silencing microRNA by interfering nanoparticles in mice.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 6, p. e38, doi. 10.1093/nar/gkq1307

By:

Su, Jie;
Baigude, Huricha;
McCarroll, Joshua;
Rana, Tariq M.

Publication type:

Article

Tertiary contacts control switching of the SAM-I riboswitch.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 6, p. 2416, doi. 10.1093/nar/gkq1096

By:

Hennelly, Scott P.;
Sanbonmatsu, Karissa Y.

Publication type:

Article

Protein multiple sequence alignment by hybrid bio-inspired algorithms.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 6, p. 1980, doi. 10.1093/nar/gkq1052

By:

Cutello, Vincenzo;
Nicosia, Giuseppe;
Pavone, Mario;
Prizzi, Igor

Publication type:

Article

Conjugation polymer nanobelts: a novel fluorescent sensing platform for nucleic acid detection†.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 6, p. e37, doi. 10.1093/nar/gkq1294

By:

Wang, Lei;
Zhang, Yingwei;
Tian, Jingqi;
Li, Hailong;
Sun, Xuping

Publication type:

Article

An SF1 affinity model to identify branch point sequences in human introns.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 6, p. 2344, doi. 10.1093/nar/gkq1046

By:

Pastuszak, Alexander W.;
Joachimiak, Marcin P.;
Blanchette, Marco;
Rio, Donald C.;
Brenner, Steven E.;
Frankel, Alan D.

Publication type:

Article

A conserved structure within the HIV gag open reading frame that controls translation initiation directly recruits the 40S subunit and eIF3.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 6, p. 2367, doi. 10.1093/nar/gkq1118

By:

Locker, Nicolas;
Chamond, Nathalie;
Sargueil, Bruno

Publication type:

Article

Expression of distinct RNAs from 3′ untranslated regions.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 6, p. 2393, doi. 10.1093/nar/gkq1158

By:

Mercer, Tim R.;
Wilhelm, Dagmar;
Dinger, Marcel E.;
Soldà, Giulia;
Korbie, Darren J.;
Glazov, Evgeny A.;
Truong, Vy;
Schwenke, Maren;
Simons, Cas;
Matthaei, Klaus I.;
Saint, Robert;
Koopman, Peter;
Mattick, John S.

Publication type:

Article