Works matching IS 03051048 AND DT 2011 AND VI 39 AND IP 5

Results: 37

Late steps of ribosome assembly in E. coli are sensitive to a severe heat stress but are assisted by the HSP70 chaperone machine†.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 5, p. 1855, doi. 10.1093/nar/gkq1049

By:

René, Olivier;
Alix, Jean-Hervé

Publication type:

Article

Chromatin particle spectrum analysis: a method for comparative chromatin structure analysis using paired-end mode next-generation DNA sequencing.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 5, p. e26, doi. 10.1093/nar/gkq1183

By:

Kent, Nicholas A.;
Adams, Steffan;
Moorhouse, Alex;
Paszkiewicz, Konrad

Publication type:

Article

A simple method using PyrosequencingTM to identify de novo SNPs in pooled DNA samples.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 5, p. e28, doi. 10.1093/nar/gkq1249

By:

Lin, Yeong-Shin;
Liu, Fu-Guo Robert;
Wang, Tzi-Yuan;
Pan, Cheng-Tsung;
Chang, Wei-Ting;
Li, Wen-Hsiung

Publication type:

Article

Natural and engineered nicking endonucleases—from cleavage mechanism to engineering of strand-specificity.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 5, p. 1966, doi. 10.1093/nar/gkr136

By:

Chan, Siu-Hong;
Stoddard, Barry L.;
Xu, Shuang-yong

Publication type:

Article

Structural basis for the methylation of A1408 in 16S rRNA by a panaminoglycoside resistance methyltransferase NpmA from a clinical isolate and analysis of the NpmA interactions with the 30S ribosomal subunit.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 5, p. 1903, doi. 10.1093/nar/gkq1033

By:

Husain, Nilofer;
Obranić, Sonja;
Koscinski, Lukasz;
Seetharaman, J.;
Babić, Fedora;
Bujnicki, Janusz M.;
Maravić-Vlahoviček, Gordana;
Sivaraman, J.

Publication type:

Article

MetaPhOrs: orthology and paralogy predictions from multiple phylogenetic evidence using a consistency-based confidence score.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 5, p. e32, doi. 10.1093/nar/gkq953

By:

Pryszcz, Leszek P.;
Huerta-Cepas, Jaime;
Gabaldón, Toni

Publication type:

Article

A prominent β-hairpin structure in the winged-helix domain of RECQ1 is required for DNA unwinding and oligomer formation.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 5, p. 1703, doi. 10.1093/nar/gkq1031

By:

Lucic, Bojana;
Zhang, Ying;
King, Oliver;
Mendoza-Maldonado, Ramiro;
Berti, Matteo;
Niesen, Frank H.;
Burgess-Brown, Nicola A.;
Pike, Ashley C. W.;
Cooper, Christopher D. O.;
Gileadi, Opher;
Vindigni, Alessandro

Publication type:

Article

Sensitive and accurate identification of protein–DNA binding events in ChIP-chip assays using higher order derivative analysis.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 5, p. 1656, doi. 10.1093/nar/gkq848

By:

Barrett, Christian L.;
Cho, Byung-Kwan;
Palsson, Bernhard O.

Publication type:

Article

hSSB1 rapidly binds at the sites of DNA double-strand breaks and is required for the efficient recruitment of the MRN complex.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 5, p. 1692, doi. 10.1093/nar/gkq1098

By:

Richard, Derek J.;
Savage, Kienan;
Bolderson, Emma;
Cubeddu, Liza;
So, Sairei;
Ghita, Mihaela;
Chen, David J.;
White, Malcolm F.;
Richard, Kerry;
Prise, Kevin M.;
Schettino, Giuseppe;
Khanna, Kum Kum

Publication type:

Article

A zinc finger protein array for the visual detection of specific DNA sequences for diagnostic applications.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 5, p. e29, doi. 10.1093/nar/gkq1214

By:

Kim, Moon-Soo;
Stybayeva, Gulnaz;
Lee, Ji Youn;
Revzin, Alexander;
Segal, David J.

Publication type:

Article

Thermodynamic contributions of single internal rA·dA, rC·dC, rG·dG and rU·dT mismatches in RNA/DNA duplexes.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 5, p. 1894, doi. 10.1093/nar/gkq905

By:

Watkins, Norman E.;
Kennelly, William J.;
Tsay, Mike J.;
Tuin, Astrid;
Swenson, Lara;
Lee, Hyung-Ran;
Morosyuk, Svetlana;
Hicks, Donald A.;
SantaLucia, John

Publication type:

Article

Subscriptions.

Published in:: Nucleic Acids Research, 2011, v. 39, n. 5, p. iii, doi. 10.1093/nar/gkr192
Publication type:: Article

The effects of histone H4 tail acetylations on cation-induced chromatin folding and self-association.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 5, p. 1680, doi. 10.1093/nar/gkq900

By:

Allahverdi, Abdollah;
Yang, Renliang;
Korolev, Nikolay;
Fan, Yanping;
Davey, Curt A.;
Liu, Chuan-Fa;
Nordenskiöld, Lars

Publication type:

Article

5′-end surveillance by Xrn2 acts as a shared mechanism for mammalian pre-rRNA maturation and decay.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 5, p. 1811, doi. 10.1093/nar/gkq1050

By:

Wang, Minshi;
Pestov, Dimitri G.

Publication type:

Article

EpiChIP: gene-by-gene quantification of epigenetic modification levels.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 5, p. e27, doi. 10.1093/nar/gkq1226

By:

Hebenstreit, Daniel;
Gu, Muxin;
Haider, Syed;
Turner, Daniel J.;
Liò, Pietro;
Teichmann, Sarah A.

Publication type:

Article

The pseudogenes of Mycobacterium leprae reveal the functional relevance of gene order within operons.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 5, p. 1732, doi. 10.1093/nar/gkq1067

By:

Muro, Enrique M.;
Mah, Nancy;
Moreno-Hagelsieb, Gabriel;
Andrade-Navarro, Miguel A.

Publication type:

Article

RTEL1: an essential helicase for telomere maintenance and the regulation of homologous recombination.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 5, p. 1647, doi. 10.1093/nar/gkq1045

By:

Uringa, Evert-Jan;
Youds, Jillian L.;
Lisaingo, Kathleen;
Lansdorp, Peter M.;
Boulton, Simon J.

Publication type:

Article

tRNA 5′-end repair activities of tRNAHis guanylyltransferase (Thg1)-like proteins from Bacteria and Archaea.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 5, p. 1833, doi. 10.1093/nar/gkq976

By:

Rao, Bhalchandra S.;
Maris, Emily L.;
Jackman, Jane E.

Publication type:

Article

The high fidelity and unique error signature of human DNA polymerase ϵ.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 5, p. 1763, doi. 10.1093/nar/gkq1034

By:

Korona, Dagmara A.;
LeCompte, Kimberly G.;
Pursell, Zachary F.

Publication type:

Article

Direct involvement of the TEN domain at the active site of human telomerase.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 5, p. 1774, doi. 10.1093/nar/gkq1083

By:

Jurczyluk, Julie;
Nouwens, Amanda S.;
Holien, Jessica K.;
Adams, Timothy E.;
Lovrecz, George O.;
Parker, Michael W.;
Cohen, Scott B.;
Bryan, Tracy M.

Publication type:

Article

A general and efficient approach for the construction of RNA oligonucleotides containing a 5′-phosphorothiolate linkage.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 5, p. e31, doi. 10.1093/nar/gkq1265

By:

Li, Nan-Sheng;
Frederiksen, John K.;
Koo, Selene C.;
Lu, Jun;
Wilson, Timothy J.;
Lilley, David M. J.;
Piccirilli, Joseph A.

Publication type:

Article

Determinants of R-loop formation at convergent bidirectionally transcribed trinucleotide repeats.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 5, p. 1749, doi. 10.1093/nar/gkq935

By:

Reddy, Kaalak;
Tam, Mandy;
Bowater, Richard P.;
Barber, Miriam;
Tomlinson, Matthew;
Nichol Edamura, Kerrie;
Wang, Yuh-Hwa;
Pearson, Christopher E.

Publication type:

Article

The latch modulates nucleotide and DNA binding to the helicase-like domain of Thermotoga maritima reverse gyrase and is required for positive DNA supercoiling.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 5, p. 1789, doi. 10.1093/nar/gkq1048

By:

Ganguly, Agneyo;
del Toro Duany, Yoandris;
Rudolph, Markus G.;
Klostermeier, Dagmar

Publication type:

Article

YaeJ is a novel ribosome-associated protein in Escherichia coli that can hydrolyze peptidyl–tRNA on stalled ribosomes.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 5, p. 1739, doi. 10.1093/nar/gkq1097

By:

Handa, Yoshihiro;
Inaho, Noriyuki;
Nameki, Nobukazu

Publication type:

Article

Expanding the chemical scope of RNA:methyltransferases to site-specific alkynylation of RNA for click labeling.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 5, p. 1943, doi. 10.1093/nar/gkq825

By:

Motorin, Yuri;
Burhenne, Jürgen;
Teimer, Roman;
Koynov, Kaloian;
Willnow, Sophie;
Weinhold, Elmar;
Helm, Mark

Publication type:

Article

Kinetically governed polymorphism of d(G4T4G3) quadruplexes in K+ solutions.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 5, p. 1933, doi. 10.1093/nar/gkq867

By:

Prislan, Iztok;
Lah, Jurij;
Milanic, Matija;
Vesnaver, Gorazd

Publication type:

Article

Nucleic Acids Research.

Published in:: Nucleic Acids Research, 2011, v. 39, n. 5, p. i, doi. 10.1093/nar/gkr190
Publication type:: Article

Directed adenovirus evolution using engineered mutator viral polymerases.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 5, p. e30, doi. 10.1093/nar/gkq1258

By:

Uil, Taco G.;
Vellinga, Jort;
de Vrij, Jeroen;
van den Hengel, Sanne K.;
Rabelink, Martijn J. W. E.;
Cramer, Steve J.;
Eekels, Julia J. M.;
Ariyurek, Yavuz;
van Galen, Michiel;
Hoeben, Rob C.

Publication type:

Article

Sequence-dependent cooperative binding of p53 to DNA targets and its relationship to the structural properties of the DNA targets.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 5, p. 1919, doi. 10.1093/nar/gkq1044

By:

Beno, Itai;
Rosenthal, Karin;
Levitine, Michael;
Shaulov, Lihi;
Haran, Tali E.

Publication type:

Article

A failure of meiotic chromosome segregation in a fbh1Δ mutant correlates with persistent Rad51-DNA associations.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 5, p. 1718, doi. 10.1093/nar/gkq977

By:

Sun, Weili;
Lorenz, Alexander;
Osman, Fekret;
Whitby, Matthew C.

Publication type:

Article

Engineered split in Pfu DNA polymerase fingers domain improves incorporation of nucleotide γ-phosphate derivative.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 5, p. 1801, doi. 10.1093/nar/gkq1053

By:

Hansen, Connie J.;
Wu, Lydia;
Fox, Jeffrey D.;
Arezi, Bahram;
Hogrefe, Holly H.

Publication type:

Article

Synthesis and structural characterization of piperazino-modified DNA that favours hybridization towards DNA over RNA.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 5, p. 1953, doi. 10.1093/nar/gkq1123

By:

Skov, Joan;
Bryld, Torsten;
Lindegaard, Dorthe;
Nielsen, Katrine E.;
Højland, Torben;
Wengel, Jesper;
Petersen, Michael

Publication type:

Article

Identification of family-determining residues in PHD fingers.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 5, p. 1666, doi. 10.1093/nar/gkq947

By:

Slama, Patrick;
Geman, Donald

Publication type:

Article

Analysis of in situ pre-mRNA targets of human splicing factor SF1 reveals a function in alternative splicing.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 5, p. 1868, doi. 10.1093/nar/gkq1042

By:

Corioni, Margherita;
Antih, Nicolas;
Tanackovic, Goranka;
Zavolan, Mihaela;
Krämer, Angela

Publication type:

Article

microRNA profiling in Epstein–Barr virus-associated B-cell lymphoma.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 5, p. 1880, doi. 10.1093/nar/gkq1043

By:

Imig, Jochen;
Motsch, Natalie;
Zhu, Jia Yun;
Barth, Stephanie;
Okoniewski, Michal;
Reineke, Tanja;
Tinguely, Marianne;
Faggioni, Alberto;
Trivedi, Pankaj;
Meister, Gunter;
Renner, Christoph;
Grässer, Friedrich A.

Publication type:

Article

Developmental expression of non-coding RNAs in Chlamydia trachomatis during normal and persistent growth.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 5, p. 1843, doi. 10.1093/nar/gkq1065

By:

AbdelRahman, Yasser M.;
Rose, Lorne A.;
Belland, Robert J.

Publication type:

Article

Improved specificity of gene silencing by siRNAs containing unlocked nucleobase analogs.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 5, p. 1823, doi. 10.1093/nar/gkq961

By:

Vaish, Narendra;
Chen, Feng;
Seth, Shaguna;
Fosnaugh, Kathy;
Liu, Yan;
Adami, Roger;
Brown, Tod;
Chen, Yan;
Harvie, Pierrot;
Johns, Rachel;
Severson, Gregory;
Granger, Brian;
Charmley, Patrick;
Houston, Michael;
Templin, Michael V.;
Polisky, Barry

Publication type:

Article