Works matching IS 03051048 AND DT 2011 AND VI 39 AND IP 4

Results: 50

Hpy188I–DNA pre- and post-cleavage complexes—snapshots of the GIY-YIG nuclease mediated catalysis.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 4, p. 1554, doi. 10.1093/nar/gkq821

By:

Sokolowska, Monika;
Czapinska, Honorata;
Bochtler, Matthias

Publication type:

Article

Discovering pathways by orienting edges in protein interaction networks.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 4, p. e22, doi. 10.1093/nar/gkq1207

By:

Gitter, Anthony;
Klein-Seetharaman, Judith;
Gupta, Anupam;
Bar-Joseph, Ziv

Publication type:

Article

Fluorescence-based duplex–quadruplex competition test to screen for telomerase RNA quadruplex ligands.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 4, p. e21, doi. 10.1093/nar/gkq1199

By:

Lacroix, Laurent;
Séosse, Aurélie;
Mergny, Jean-Louis

Publication type:

Article

The Bowen–Conradi syndrome protein Nep1 (Emg1) has a dual role in eukaryotic ribosome biogenesis, as an essential assembly factor and in the methylation of Ψ1191 in yeast 18S rRNA.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 4, p. 1526, doi. 10.1093/nar/gkq931

By:

Meyer, Britta;
Wurm, Jan Philip;
Kötter, Peter;
Leisegang, Matthias S.;
Schilling, Valeska;
Buchhaupt, Markus;
Held, Martin;
Bahr, Ute;
Karas, Michael;
Heckel, Alexander;
Bohnsack, Markus T.;
Wöhnert, Jens;
Entian, Karl-Dieter

Publication type:

Article

Temperature dependence of DNA persistence length.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 4, p. 1419, doi. 10.1093/nar/gkq932

By:

Geggier, Stephanie;
Kotlyar, Alexander;
Vologodskii, Alexander

Publication type:

Article

Crystal structure of RIG-I C-terminal domain bound to blunt-ended double-strand RNA without 5′ triphosphate.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 4, p. 1565, doi. 10.1093/nar/gkq974

By:

Lu, Cheng;
Ranjith-Kumar, C. T.;
Hao, Lujiang;
Kao, C. Cheng;
Li, Pingwei

Publication type:

Article

Identification of new homologs of PD-(D/E)XK nucleases by support vector machines trained on data derived from profile–profile alignments.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 4, p. 1187, doi. 10.1093/nar/gkq958

By:

Laganeckas, Mindaugas;
Margelevičius, Mindaugas;
Venclovas, Česlovas

Publication type:

Article

Amphiphilic block copolymers enhance the cellular uptake of DNA molecules through a facilitated plasma membrane transport.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 4, p. 1610

By:

Chèvre, Raphaël;
Le Bihan, Olivier;
Beilvert, Fanny;
Chatin, Benoit;
Barteau, Benoit;
Mével, Mathieu;
Lambert, Olivier;
Pitard, Bruno

Publication type:

Article

Selection of Shine-Dalgarno sequences in plastids.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 4, p. 1427, doi. 10.1093/nar/gkq978

By:

Drechsel, Oliver;
Bock, Ralph

Publication type:

Article

Stimuli-responsive controlled-release system using quadruplex DNA-capped silica nanocontainers.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 4, p. 1638, doi. 10.1093/nar/gkq893

By:

Chen, Cuie;
Pu, Fang;
Huang, Zhenzhen;
Liu, Zhen;
Ren, Jinsong;
Qu, Xiaogang

Publication type:

Article

A role for human Dicer in pre-RISC loading of siRNAs.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 4, p. 1510, doi. 10.1093/nar/gkq846

By:

Sakurai, Kumi;
Amarzguioui, Mohammed;
Kim, Dong-Ho;
Alluin, Jessica;
Heale, Bret;
Song, Min-sun;
Gatignol, Anne;
Behlke, Mark A.;
Rossi, John J.

Publication type:

Article

An RNA degradosome assembly in Caulobacter crescentus.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 4, p. 1449, doi. 10.1093/nar/gkq928

By:

Hardwick, Steven W.;
Chan, Vivian S. Y.;
Broadhurst, R. William;
Luisi, Ben F.

Publication type:

Article

Real time monitoring of endogenous cytoplasmic mRNA using linear antisense 2′-O-methyl RNA probes in living cells.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 4, p. e20, doi. 10.1093/nar/gkq1196

By:

Okabe, Kohki;
Harada, Yoshie;
Zhang, Junwei;
Tadakuma, Hisashi;
Tani, Tokio;
Funatsu, Takashi

Publication type:

Article

Microhomology-mediated deletion and gene conversion in African trypanosomes.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 4, p. 1372, doi. 10.1093/nar/gkq981

By:

Glover, Lucy;
Jun, Junho;
Horn, David

Publication type:

Article

Geometrical correlations in the nucleosomal DNA conformation and the role of the covalent bonds rigidity.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 4, p. 1220, doi. 10.1093/nar/gkq952

By:

Ghorbani, Maryam;
Mohammad-Rafiee, Farshid

Publication type:

Article

Evidence of the formation of G-quadruplex structures in the promoter region of the human vascular endothelial growth factor gene.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 4, p. 1256, doi. 10.1093/nar/gkq926

By:

Sun, Daekyu;
Guo, Kexiao;
Shin, Yoon-Joo

Publication type:

Article

Nucleic Acids Research.

Published in:: Nucleic Acids Research, 2011, v. 39, n. 4, p. i, doi. 10.1093/nar/gkr133
Publication type:: Article

Fluorescent xDNA nucleotides as efficient substrates for a template-independent polymerase.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 4, p. 1586, doi. 10.1093/nar/gkq853

By:

Jarchow-Choy, Sarah K.;
Krueger, Andrew T.;
Liu, Haibo;
Gao, Jianmin;
Kool, Eric T.

Publication type:

Article

Defining cell populations with single-cell gene expression profiling: correlations and identification of astrocyte subpopulations.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 4, p. e24

By:

Ståhlberg, Anders;
Andersson, Daniel;
Aurelius, Johan;
Faiz, Maryam;
Pekna, Marcela;
Kubista, Mikael;
Pekny, Milos

Publication type:

Article

Ab initio identification of transcription start sites in the Rhesus macaque genome by histone modification and RNA-Seq.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 4, p. 1408, doi. 10.1093/nar/gkq956

By:

Liu, Yi;
Han, Dali;
Han, Yixing;
Yan, Zheng;
Xie, Bin;
Li, Jing;
Qiao, Nan;
Hu, Haiyang;
Khaitovich, Philipp;
Gao, Yuan;
Han, Jing-Dong J.

Publication type:

Article

Redundant or separate entities?—roles of Twist1 and Twist2 as molecular switches during gene transcription.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 4, p. 1177, doi. 10.1093/nar/gkq890

By:

Franco, Hector L.;
Casasnovas, José;
Rodríguez-Medina, José R.;
Cadilla, Carmen L.

Publication type:

Article

Phosphate binding sites identification in protein structures.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 4, p. 1231, doi. 10.1093/nar/gkq987

By:

Parca, Luca;
Gherardini, Pier Federico;
Helmer-Citterich, Manuela;
Ausiello, Gabriele

Publication type:

Article

A discontinuous DNA glycosylase domain in a family of enzymes that excise 5-methylcytosine.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 4, p. 1473, doi. 10.1093/nar/gkq982

By:

Ponferrada-Marín, María Isabel;
Parrilla-Doblas, Jara Teresa;
Roldán-Arjona, Teresa;
Ariza, Rafael R.

Publication type:

Article

Subscriptions.

Published in:: Nucleic Acids Research, 2011, v. 39, n. 4, p. iii, doi. 10.1093/nar/gkr135
Publication type:: Article

The evolution and expression of the snaR family of small non-coding RNAs.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 4, p. 1485, doi. 10.1093/nar/gkq856

By:

Parrott, Andrew M.;
Tsai, Michael;
Batchu, Priyanka;
Ryan, Karen;
Ozer, Harvey L.;
Tian, Bin;
Mathews, Michael B.

Publication type:

Article

Co-transcriptional RNA cleavage provides a failsafe termination mechanism for yeast RNA polymerase I.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 4, p. 1439, doi. 10.1093/nar/gkq894

By:

Braglia, Priscilla;
Kawauchi, Junya;
Proudfoot, Nick J.

Publication type:

Article

Verification of alternative splicing variants based on domain integrity, truncation length and intrinsic protein disorder.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 4, p. 1208, doi. 10.1093/nar/gkq843

By:

Hegyi, Hedi;
Kalmar, Lajos;
Horvath, Tamas;
Tompa, Peter

Publication type:

Article

Mechanisms of mutagenesis in vivo due to imbalanced dNTP pools.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 4, p. 1360, doi. 10.1093/nar/gkq829

By:

Kumar, Dinesh;
Abdulovic, Amy L.;
Viberg, Jörgen;
Nilsson, Anna Karin;
Kunkel, Thomas A.;
Chabes, Andrei

Publication type:

Article

A new repeat-masking method enables specific detection of homologous sequences.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 4, p. e23, doi. 10.1093/nar/gkq1212

By:

Frith, Martin C.

Publication type:

Article

Rapamycin increases rDNA stability by enhancing association of Sir2 with rDNA in Saccharomyces cerevisiae.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 4, p. 1336, doi. 10.1093/nar/gkq895

By:

Ha, Cheol Woong;
Huh, Won-Ki

Publication type:

Article

Olig2 regulates Sox10 expression in oligodendrocyte precursors through an evolutionary conserved distal enhancer.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 4, p. 1280, doi. 10.1093/nar/gkq951

By:

Küspert, Melanie;
Hammer, Alexander;
Bösl, Michael R.;
Wegner, Michael

Publication type:

Article

Quantifying the energetic contributions of desolvation and π-electron density during translesion DNA synthesis.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 4, p. 1623, doi. 10.1093/nar/gkq925

By:

Motea, Edward A.;
Lee, Irene;
Berdis, Anthony J.

Publication type:

Article

Common and divergent features in transcriptional control of the homologous small RNAs GlmY and GlmZ in Enterobacteriaceae.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 4, p. 1294, doi. 10.1093/nar/gkq986

By:

Göpel, Yvonne;
Lüttmann, Denise;
Heroven, Ann Kathrin;
Reichenbach, Birte;
Dersch, Petra;
Görke, Boris

Publication type:

Article

Meiotic recombination protein Rec12: functional conservation, crossover homeostasis and early crossover/non-crossover decision.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 4, p. 1460, doi. 10.1093/nar/gkq993

By:

Kan, Fengling;
Davidson, Mari K.;
Wahls, Wayne P.

Publication type:

Article

Identification of RNA recognition elements in the Saccharomyces cerevisiae transcriptome.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 4, p. 1501, doi. 10.1093/nar/gkq920

By:

Riordan, Daniel P.;
Herschlag, Daniel;
Brown, Patrick O.

Publication type:

Article

Identification of rare alleles and their carriers using compressed se(que)nsing.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 4, p. 1645, doi. 10.1093/nar/gkr039

By:

Shental, Noam;
Amirand, Amnon;
Zuk, Or

Publication type:

Article

GCN5 and E2F1 stimulate nucleotide excision repair by promoting H3K9 acetylation at sites of damage.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 4, p. 1390, doi. 10.1093/nar/gkq983

By:

Guo, Ruifeng;
Chen, Jie;
Mitchell, David L.;
Johnson, David G.

Publication type:

Article

An integrated transcriptomic and computational analysis for biomarker identification in gastric cancer.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 4, p. 1197, doi. 10.1093/nar/gkq960

By:

Cui, Juan;
Chen, Yunbo;
Chou, Wen-Chi;
Sun, Liankun;
Chen, Li;
Suo, Jian;
Ni, Zhaohui;
Zhang, Ming;
Kong, Xiaoxia;
Hoffman, Lisabeth L.;
Kang, Jinsong;
Su, Yingying;
Olman, Victor;
Johnson, Darryl;
Tench, Daniel W.;
Amster, I. Jonathan;
Orlando, Ron;
Puett, David;
Li, Fan;
Xu, Ying

Publication type:

Article

A manually curated ChIP-seq benchmark demonstrates room for improvement in current peak-finder programs.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 4, p. e25, doi. 10.1093/nar/gkq1187

By:

Rye, Morten Beck;
Sætrom, Pål;
Drabløs, Finn

Publication type:

Article

Regulation of the androgen receptor by SET9-mediated methylation.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 4, p. 1266, doi. 10.1093/nar/gkq861

By:

Gaughan, Luke;
Stockley, Jacqueline;
Wang, Nan;
McCracken, Stuart R.C.;
Treumann, Achim;
Armstrong, Kelly;
Shaheen, Fadhel;
Watt, Kate;
McEwan, Iain J.;
Wang, Chenguang;
Pestell, Richard G.;
Robson, Craig N.

Publication type:

Article

The expression of myogenic microRNAs indirectly requires protein arginine methyltransferase (Prmt)5 but directly requires Prmt4.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 4, p. 1243, doi. 10.1093/nar/gkq896

By:

Mallappa, Chandrashekara;
Hu, Yu-Jie;
Shamulailatpam, Priscilla;
Tae, Sookil;
Sif, Saïd;
Imbalzano, Anthony N.

Publication type:

Article

Site-directed mutagenesis of the χ subunit of DNA polymerase III and single-stranded DNA-binding protein of E. coli reveals key residues for their interaction.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 4, p. 1398, doi. 10.1093/nar/gkq988

By:

Naue, Natalie;
Fedorov, Roman;
Pich, Andreas;
Manstein, Dietmar J.;
Curth, Ute

Publication type:

Article

Assembly of a fragmented ribonucleotide reductase by protein interaction domains derived from a mobile genetic element.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 4, p. 1381, doi. 10.1093/nar/gkq924

By:

Crona, Mikael;
Moffatt, Connor;
Friedrich, Nancy C.;
Hofer, Anders;
Sjöberg, Britt-Marie;
Edgell, David R.

Publication type:

Article

Interaction of Rep and DnaB on DNA.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 4, p. 1351, doi. 10.1093/nar/gkq975

By:

Atkinson, John;
Gupta, Milind K.;
McGlynn, Peter

Publication type:

Article

The transcriptional co-activator LEDGF/p75 displays a dynamic scan-and-lock mechanism for chromatin tethering.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 4, p. 1310, doi. 10.1093/nar/gkq933

By:

Hendrix, Jelle;
Gijsbers, Rik;
De Rijck, Jan;
Voet, Arnout;
Hotta, Jun-ichi;
McNeely, Melissa;
Hofkens, Johan;
Debyser, Zeger;
Engelborghs, Yves

Publication type:

Article

Digital MDA for enumeration of total nucleic acid contamination.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 4, p. e19, doi. 10.1093/nar/gkq1074

By:

Blainey, Paul C.;
Quake, Stephen R.

Publication type:

Article

Probing the in vitro mechanism of action of cationic lipid/DNA lipoplexes at a nanometric scale.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 4, p. 1595, doi. 10.1093/nar/gkq921

By:

Le Bihan, Olivier;
Chèvre, Raphaël;
Mornet, Stéphane;
Garnier, Boris;
Pitard, Bruno;
Lambert, Olivier

Publication type:

Article

Synergism between DNA methylation and macroH2A1 occupancy in epigenetic silencing of the tumor suppressor gene p16(CDKN2A).

Published in:

Nucleic Acids Research, 2011, v. 39, n. 4, p. 1326, doi. 10.1093/nar/gkq994

By:

Barzily-Rokni, Michal;
Friedman, Nathalie;
Ron-Bigger, Shulamit;
Isaac, Sara;
Michlin, Dan;
Eden, Amir

Publication type:

Article

Structural basis for the dual RNA-recognition modes of human Tra2-β RRM.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 4, p. 1538, doi. 10.1093/nar/gkq854

By:

Tsuda, Kengo;
Someya, Tatsuhiko;
Kuwasako, Kanako;
Takahashi, Mari;
He, Fahu;
Unzai, Satoru;
Inoue, Makoto;
Harada, Takushi;
Watanabe, Satoru;
Terada, Takaho;
Kobayashi, Naohiro;
Shirouzu, Mikako;
Kigawa, Takanori;
Tanaka, Akiko;
Sugano, Sumio;
Güntert, Peter;
Yokoyama, Shigeyuki;
Muto, Yutaka

Publication type:

Article

Crystal structure of a novel JmjC-domain-containing protein, TYW5, involved in tRNA modification.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 4, p. 1576, doi. 10.1093/nar/gkq919

By:

Kato, Megumi;
Araiso, Yuhei;
Noma, Akiko;
Nagao, Asuteka;
Suzuki, Tsutomu;
Ishitani, Ryuichiro;
Nureki, Osamu

Publication type:

Article