Works matching IS 03051048 AND DT 2011 AND VI 39 AND IP 3

Results: 42

Efficient and specific knockdown of small non-coding RNAs in mammalian cells and in mice.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 3, p. e13, doi. 10.1093/nar/gkq1121

By:

Liang, Xue-hai;
Vickers, Timothy A.;
Guo, Shuling;
Crooke, Stanley T.

Publication type:

Article

The ARiBo tag: a reliable tool for affinity purification of RNAs under native conditions.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 3, p. e18, doi. 10.1093/nar/gkq1084

By:

Di Tomasso, Geneviève;
Lampron, Philipe;
Dagenais, Pierre;
Omichinski, James G.;
Legault, Pascale

Publication type:

Article

BORIS/CTCFL-mediated transcriptional regulation of the hTERT telomerase gene in testicular and ovarian tumor cells.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 3, p. 862, doi. 10.1093/nar/gkq827

By:

Renaud, Stéphanie;
Loukinov, Dmitri;
Alberti, Loredana;
Vostrov, Alexander;
Kwon, Yoo-Wook;
Bosman, Fred T.;
Lobanenkov, Victor;
Benhattar, Jean

Publication type:

Article

Characterization of L1 retrotransposition with high-throughput dual-luciferase assays.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 3, p. e16, doi. 10.1093/nar/gkq1076

By:

Xie, Yi;
Rosser, James M.;
Thompson, Tina L.;
Boeke, Jef D.;
An, Wenfeng

Publication type:

Article

End-processing during non-homologous end-joining: a role for exonuclease 1.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 3, p. 970, doi. 10.1093/nar/gkq886

By:

Bahmed, Karim;
Seth, Aman;
Nitiss, Karin C.;
Nitiss, John L.

Publication type:

Article

Dual-specificity phosphatase 23 mediates GCM1 dephosphorylation and activation.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 3, p. 848, doi. 10.1093/nar/gkq838

By:

Lin, Fang-Yu;
Chang, Ching-Wen;
Cheong, Mei-Leng;
Chen, Hsei-Chorn;
Lee, Der-Yen;
Chang, Geen-Dong;
Chen, Hungwen

Publication type:

Article

Optimizing anti-gene oligonucleotide ‘Zorro-LNA’ for improved strand invasion into duplex DNA.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 3, p. 1142, doi. 10.1093/nar/gkq835

By:

Zaghloul, Eman M.;
Madsen, Andreas S.;
Moreno, Pedro M. D.;
Oprea, Iulian I.;
El-Andaloussi, Samir;
Bestas, Burcu;
Gupta, Pankaj;
Pedersen, Erik B.;
Lundin, Karin E.;
Wengel, Jesper;
Smith, C. I. Edvard

Publication type:

Article

Structural characterization of naturally occurring RNA single mismatches.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 3, p. 1081, doi. 10.1093/nar/gkq793

By:

Davis, Amber R.;
Kirkpatrick, Charles C.;
Znosko, Brent M.

Publication type:

Article

Cellular and viral chromatin proteins are positive factors in the regulation of adenovirus gene expression.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 3, p. 889, doi. 10.1093/nar/gkq783

By:

Komatsu, Tetsuro;
Haruki, Hirohito;
Nagata, Kyosuke

Publication type:

Article

MiRNA–miRNA synergistic network: construction via co-regulating functional modules and disease miRNA topological features.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 3, p. 825, doi. 10.1093/nar/gkq832

By:

Xu, Juan;
Li, Chuan-Xing;
Li, Yong-Sheng;
Lv, Jun-Ying;
Ma, Ye;
Shao, Ting-Ting;
Xu, Liang-De;
Wang, Ying-Ying;
Du, Lei;
Zhang, Yun-Peng;
Jiang, Wei;
Li, Chun-Quan;
Xiao, Yun;
Li, Xia

Publication type:

Article

Investigating the predictability of essential genes across distantly related organisms using an integrative approach.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 3, p. 795, doi. 10.1093/nar/gkq784

By:

Deng, Jingyuan;
Deng, Lei;
Su, Shengchang;
Zhang, Minlu;
Lin, Xiaodong;
Wei, Lan;
Minai, Ali A.;
Hassett, Daniel J.;
Lu, Long J.

Publication type:

Article

A nucleoside kinase as a dual selector for genetic switches and circuits.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 3, p. e12, doi. 10.1093/nar/gkq1070

By:

Tashiro, Yohei;
Fukutomi, Hiroki;
Terakubo, Kei;
Saito, Kyoichi;
Umeno, Daisuke

Publication type:

Article

B-cell display-based one-step method to generate chimeric human IgG monoclonal antibodies.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 3, p. e14, doi. 10.1093/nar/gkq1122

By:

Lin, Waka;
Kurosawa, Kohei;
Murayama, Akiho;
Kagaya, Eri;
Ohta, Kunihiro

Publication type:

Article

Photosensitized [2 + 2] cycloaddition of N-acetylated cytosine affords stereoselective formation of cyclobutane pyrimidine dimer.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 3, p. 1165, doi. 10.1093/nar/gkq855

By:

Yamamoto, Junpei;
Nishiguchi, Kosuke;
Manabe, Koichiro;
Masutani, Chikahide;
Hanaoka, Fumio;
Iwai, Shigenori

Publication type:

Article

Promoting RNA helical stacking via A-minor junctions.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 3, p. 1066, doi. 10.1093/nar/gkq748

By:

Geary, Cody;
Chworos, Arkadiusz;
Jaeger, Luc

Publication type:

Article

Predicting translational diffusion of evolutionary conserved RNA structures by the nucleotide number.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 3, p. e17, doi. 10.1093/nar/gkq808

By:

Werner, Arne

Publication type:

Article

The translational response of the human mdm2 gene in HEK293T cells exposed to rapamycin: a role for the 5′-UTRs.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 3, p. 989, doi. 10.1093/nar/gkq805

By:

Genolet, Raphael;
Rahim, Gwendoline;
Gubler-Jaquier, Pascale;
Curran, Joseph

Publication type:

Article

Different modes of interaction by TIAR and HuR with target RNA and DNA.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 3, p. 1117, doi. 10.1093/nar/gkq837

By:

Kim, Henry S.;
Wilce, Matthew C. J.;
Yoga, Yano M. K.;
Pendini, Nicole R.;
Gunzburg, Menachem J.;
Cowieson, Nathan P.;
Wilson, Gerald M.;
Williams, Bryan R. G.;
Gorospe, Myriam;
Wilce, Jacqueline A.

Publication type:

Article

Single-strand nicks induce homologous recombination with less toxicity than double-strand breaks using an AAV vector template.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 3, p. 926, doi. 10.1093/nar/gkq826

By:

Metzger, Michael J.;
McConnell-Smith, Audrey;
Stoddard, Barry L.;
Miller, A. Dusty

Publication type:

Article

Localization of an accessory helicase at the replisome is critical in sustaining efficient genome duplication.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 3, p. 949, doi. 10.1093/nar/gkq889

By:

Atkinson, John;
Gupta, Milind K.;
Rudolph, Christian J.;
Bell, Hazel;
Lloyd, Robert G.;
McGlynn, Peter

Publication type:

Article

Amplification of a plasmid bearing a mammalian replication initiation region in chromosomal and extrachromosomal contexts.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 3, p. 958, doi. 10.1093/nar/gkq882

By:

Harada, Seiyu;
Sekiguchi, Naoki;
Shimizu, Noriaki

Publication type:

Article

DNA methyltransferase 3b preferentially associates with condensed chromatin.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 3, p. 874, doi. 10.1093/nar/gkq870

By:

Kashiwagi, Katsunobu;
Nimura, Keisuke;
Ura, Kiyoe;
Kaneda, Yasufumi

Publication type:

Article

The activity of the HIV-1 IRES is stimulated by oxidative stress and controlled by a negative regulatory element.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 3, p. 902, doi. 10.1093/nar/gkq885

By:

Gendron, Karine;
Ferbeyre, Gerardo;
Heveker, Nikolaus;
Brakier-Gingras, Léa

Publication type:

Article

Conserved small RNAs govern replication and incompatibility of a diverse new plasmid family from marine bacteria.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 3, p. 1004, doi. 10.1093/nar/gkq852

By:

Le Roux, Frédérique;
Davis, Brigid M.;
Waldor, Matthew K.

Publication type:

Article

Theoretical and empirical quality assessment of transcription factor-binding motifs.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 3, p. 808, doi. 10.1093/nar/gkq710

By:

Medina-Rivera, Alejandra;
Abreu-Goodger, Cei;
Thomas-Chollier, Morgane;
Salgado, Heladia;
Collado-Vides, Julio;
van Helden, Jacques

Publication type:

Article

The geometry of DNA supercoils modulates the DNA cleavage activity of human topoisomerase I.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 3, p. 1014, doi. 10.1093/nar/gkq822

By:

Gentry, Amanda C.;
Juul, Sissel;
Veigaard, Christopher;
Knudsen, Birgitta R.;
Osheroff, Neil

Publication type:

Article

Evidences for increased expression variation of duplicate genes in budding yeast: from cis- to trans-regulation effects.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 3, p. 837, doi. 10.1093/nar/gkq874

By:

Dong, Dong;
Yuan, Zineng;
Zhang, Zhaolei

Publication type:

Article

Splicing of the Sinorhizobium meliloti RmInt1 group II intron provides evidence of retroelement behavior.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 3, p. 1095

By:

Chillón, Isabel;
Martínez-Abarca, Francisco;
Toro, Nicolás

Publication type:

Article

Reverse transcriptases can clamp together nucleic acids strands with two complementary bases at their 3′-termini for initiating DNA synthesis.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 3, p. 1042, doi. 10.1093/nar/gkq786

By:

Oz-Gleenberg, Iris;
Herschhorn, Alon;
Hizi, Amnon

Publication type:

Article

Improved thrombin binding aptamer by incorporation of a single unlocked nucleic acid monomer.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 3, p. 1155, doi. 10.1093/nar/gkq823

By:

Pasternak, Anna;
Hernandez, Frank J.;
Rasmussen, Lars M.;
Vester, Birte;
Wengel, Jesper

Publication type:

Article

The core-independent promoter-specific interaction of primary sigma factor.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 3, p. 913, doi. 10.1093/nar/gkq911

By:

Yeh, Hsin-Yi;
Chen, Tsung-Ching;
Liou, Kung-Ming;
Hsu, Hsiu-Ting;
Chung, Kuei-Min;
Hsu, Li-Ling;
Chang, Ban-Yang

Publication type:

Article

Efficient preparation of internally modified single-molecule constructs using nicking enzymes.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 3, p. e15, doi. 10.1093/nar/gkq1004

By:

Luzzietti, Nicholas;
Brutzer, Hergen;
Klaue, Daniel;
Schwarz, Friedrich W.;
Staroske, Wolfgang;
Clausing, Sylvia;
Seidel, Ralf

Publication type:

Article

Cleavage of model substrates by archaeal RNase P: role of protein cofactors in cleavage-site selection.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 3, p. 1105, doi. 10.1093/nar/gkq732

By:

Sinapah, Sylvie;
Wu, Shiying;
Chen, Yu;
Pettersson, B. M. Fredrik;
Gopalan, Venkat;
Kirsebom, Leif A.

Publication type:

Article

Systematically fragmented genes in a multipartite mitochondrial genome.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 3, p. 979, doi. 10.1093/nar/gkq883

By:

Vlcek, Cestmir;
Marande, William;
Teijeiro, Shona;
Lukeš, Julius;
Burger, Gertraud

Publication type:

Article

Subscriptions.

Published in:: Nucleic Acids Research, 2011, v. 39, n. 3, p. iii, doi. 10.1093/nar/gkr094
Publication type:: Article

Functional regulation of FEN1 nuclease and its link to cancer.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 3, p. 781, doi. 10.1093/nar/gkq884

By:

Zheng, Li;
Jia, Jia;
Finger, L. David;
Guo, Zhigang;
Zer, Cindy;
Shen, Binghui

Publication type:

Article

Design, construction and characterization of a set of insulated bacterial promoters.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 3, p. 1131, doi. 10.1093/nar/gkq810

By:

Davis, Joseph H.;
Rubin, Adam J.;
Sauer, Robert T.

Publication type:

Article

Regulation of somatic cell reprogramming through inducible mir-302 expression.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 3, p. 1054, doi. 10.1093/nar/gkq850

By:

Lin, Shi-Lung;
Chang, Donald C.;
Lin, Chun-Hung;
Ying, Shao-Yao;
Leu, Davey;
Wu, David T. S.

Publication type:

Article

C-terminal domain of archaeal O-phosphoseryl-tRNA kinase displays large-scale motion to bind the 7-bp D-stem of archaeal tRNASec.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 3, p. 1034, doi. 10.1093/nar/gkq845

By:

Sherrer, R. Lynn;
Araiso, Yuhei;
Aldag, Caroline;
Ishitani, Ryuichiro;
Ho, Joanne M. L.;
Söll, Dieter;
Nureki, Osamu

Publication type:

Article

Formation of a G-quadruplex at the BCL2 major breakpoint region of the t(14;18) translocation in follicular lymphoma.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 3, p. 936, doi. 10.1093/nar/gkq824

By:

Nambiar, Mridula;
Goldsmith, G.;
Moorthy, Balaji T.;
Lieber, Michael R.;
Joshi, Mamata V.;
Choudhary, Bibha;
Hosur, Ramakrishna V.;
Raghavan, Sathees C.

Publication type:

Article

Centromere-associated topoisomerase activity in bloodstream form Trypanosoma brucei.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 3, p. 1023, doi. 10.1093/nar/gkq839

By:

Obado, Samson O.;
Bot, Christopher;
Echeverry, Maria C.;
Bayona, Julio C.;
Alvarez, Vanina E.;
Taylor, Martin C.;
Kelly, John M.

Publication type:

Article

Nucleic Acids Research.

Published in:: Nucleic Acids Research, 2011, v. 39, n. 3, p. i, doi. 10.1093/nar/gkr092
Publication type:: Article