Works matching IS 03051048 AND DT 2011 AND VI 39 AND IP 22

Results: 42

Activity, specificity and structure of I-Bth0305I: a representative of a new homing endonuclease family.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 22, p. 9705, doi. 10.1093/nar/gkr669

By:

Taylor, Gregory K.;
Heiter, Daniel F.;
Pietrokovski, Shmuel;
Stoddard, Barry L.

Publication type:

Article

Secondary structure is required for 3′ splice site recognition in yeast.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 22, p. 9759, doi. 10.1093/nar/gkr662

By:

Gahura, Ondřej;
Hammann, Christian;
Valentová, Anna;
Půta, František;
Folk, Petr

Publication type:

Article

Subscriptions.

Published in:: Nucleic Acids Research, 2011, v. 39, n. 22, p. iii, doi. 10.1093/nar/gkr1277
Publication type:: Article

Novel dimeric structure of phage φ29-encoded protein p56: insights into uracil-DNA glycosylase inhibition.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 22, p. 9779, doi. 10.1093/nar/gkr667

By:

Asensio, Juan Luis;
Pérez-Lago, Laura;
Lázaro, José M.;
González, Carlos;
Serrano-Heras, Gemma;
Salas, Margarita

Publication type:

Article

Structural and functional insight into the mechanism of an alkaline exonuclease from Laribacter hongkongensis.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 22, p. 9803, doi. 10.1093/nar/gkr660

By:

Yang, Wen;
Chen, Wen-yang;
Wang, Hui;
Ho, John W. S.;
Huang, Jian-Dong;
Woo, Patrick C. Y.;
Lau, Susanna K.P.;
Yuen, Kwok-Yung;
Zhang, Qionglin;
Zhou, Weihong;
Bartlam, Mark;
Watt, Rory M.;
Rao, Zihe

Publication type:

Article

A second base pair interaction between U3 small nucleolar RNA and the 5′-ETS region is required for early cleavage of the yeast pre-ribosomal RNA.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 22, p. 9731, doi. 10.1093/nar/gkr675

By:

Marmier-Gourrier, Nathalie;
Cléry, Antoine;
Schlotter, Florence;
Senty-Ségault, Véronique;
Branlant, Christiane

Publication type:

Article

Myc and PI3K/AKT signaling cooperatively repress FOXO3a-dependent PUMA and GADD45a gene expression.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 22, p. 9498, doi. 10.1093/nar/gkr638

By:

Amente, Stefano;
Zhang, Jiyuan;
Lubrano Lavadera, Miriam;
Lania, Luigi;
Avvedimento, Enrico Vittorio;
Majello, Barbara

Publication type:

Article

Cooperative kinking at distant sites in mechanically stressed DNA.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 22, p. 9820, doi. 10.1093/nar/gkr666

By:

Lionberger, Troy A.;
Demurtas, Davide;
Witz, Guillaume;
Dorier, Julien;
Lillian, Todd;
Meyhöfer, Edgar;
Stasiak, Andrzej

Publication type:

Article

Coexisting/Coexpressing Genomic Libraries (CoGeL) identify interactions among distantly located genetic loci for developing complex microbial phenotypes.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 22, p. e152, doi. 10.1093/nar/gkr817

By:

Nicolaou, Sergios A.;
Gaida, Stefan M.;
Papoutsakis, Eleftherios T.

Publication type:

Article

Natural isoflavones regulate the quadruplex–duplex competition in human telomeric DNA.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 22, p. 9833, doi. 10.1093/nar/gkr1120

By:

Zhang, Jin-li;
Fu, Yan;
Zheng, Lin;
Li, Wei;
Li, Hao;
Sun, Qian;
Xiao, Ying;
Geng, Feng

Publication type:

Article

Direct cloning of double-stranded RNAs from RNase protection analysis reveals processing patterns of C/D box snoRNAs and provides evidence for widespread antisense transcript expression.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 22, p. 9720, doi. 10.1093/nar/gkr684

By:

Shen, Manli;
Eyras, Eduardo;
Wu, Jie;
Khanna, Amit;
Josiah, Serene;
Rederstorff, Mathieu;
Zhang, Michael Q.;
Stamm, Stefan

Publication type:

Article

Profiling of the BRCA1 transcriptome through microarray and ChIP-chip analysis.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 22, p. 9536, doi. 10.1093/nar/gkr679

By:

Gorski, Julia J.;
Savage, Kienan I.;
Mulligan, Jude M.;
McDade, Simon S.;
Blayney, Jaine K.;
Ge, Zhaoping;
Harkin, D. Paul

Publication type:

Article

A novel three-unit tRNA splicing endonuclease found in ultrasmall Archaea possesses broad substrate specificity.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 22, p. 9695, doi. 10.1093/nar/gkr692

By:

Fujishima, Kosuke;
Sugahara, Junichi;
Miller, Christopher S.;
Baker, Brett J.;
Di Giulio, Massimo;
Takesue, Kanako;
Sato, Asako;
Tomita, Masaru;
Banfield, Jillian F.;
Kanai, Akio

Publication type:

Article

Ku counteracts mobilization of PARP1 and MRN in chromatin damaged with DNA double-strand breaks.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 22, p. 9605, doi. 10.1093/nar/gkr656

By:

Cheng, Qiao;
Barboule, Nadia;
Frit, Philippe;
Gomez, Dennis;
Bombarde, Oriane;
Couderc, Bettina;
Ren, Guo-Sheng;
Salles, Bernard;
Calsou, Patrick

Publication type:

Article

Complexity in the binding of minor groove agents: netropsin has two thermodynamically different DNA binding modes at a single site.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 22, p. 9649, doi. 10.1093/nar/gkr699

By:

Lewis, Edwin A.;
Munde, Manoj;
Wang, Shuo;
Rettig, Michael;
Le, Vu;
Machha, Venkata;
Wilson, W. David

Publication type:

Article

Identification of novel proteins associated with yeast snR30 small nucleolar RNA.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 22, p. 9659, doi. 10.1093/nar/gkr659

By:

Lemay, Vincent;
Hossain, Ahmed;
Osheim, Yvonne N.;
Beyer, Ann L.;
Dragon, François

Publication type:

Article

Editorial: Nar Awards 2011.

Published in:: Nucleic Acids Research, 2011, v. 39, n. 22, p. 9459, doi. 10.1093/nar/gkr1206
Publication type:: Article

Identification of potentially cytotoxic lesions induced by UVA photoactivation of DNA 4-thiothymidine in human cells.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 22, p. 9620, doi. 10.1093/nar/gkr674

By:

Reelfs, Olivier;
Macpherson, Peter;
Ren, Xiaolin;
Xu, Yao-Zhong;
Karran, Peter;
Young, Antony R.

Publication type:

Article

Quantification noise in single cell experiments.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 22, p. 9834, doi. 10.1093/nar/gkr1136

By:

Reiter, M.;
Kirchner, B.;
Müller, H.;
Holzhauer, C.;
Mann, W.;
Pfaffl, M. W.

Publication type:

Article

Signal-induced Brd4 release from chromatin is essential for its role transition from chromatin targeting to transcriptional regulation.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 22, p. 9592, doi. 10.1093/nar/gkr698

By:

Ai, Nanping;
Hu, Xiangming;
Ding, Feng;
Yu, Bingfei;
Wang, Huiping;
Lu, Xiaodong;
Zhang, Kai;
Li, Yannan;
Han, Aidong;
Lin, Wen;
Liu, Runzhong;
Chen, Ruichuan

Publication type:

Article

Transposon Ac/Ds-induced chromosomal rearrangements at the rice OsRLG5 locus.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 22, p. e149, doi. 10.1093/nar/gkr718

By:

Xuan, Yuan Hu;
Piao, Hai Long;
Je, Byoung Il;
Park, Soon Ju;
Park, Su Hyun;
Huang, Jin;
Zhang, Jian Bo;
Peterson, Thomas;
Han, Chang-deok

Publication type:

Article

Treatment of breast cancer cells with DNA demethylating agents leads to a release of Pol II stalling at genes with DNA-hypermethylated regions upstream of TSS.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 22, p. 9508, doi. 10.1093/nar/gkr611

By:

Tao, Yongguang;
Liu, Shuang;
Briones, Victorino;
Geiman, Theresa M.;
Muegge, Kathrin

Publication type:

Article

Integration of sequence-similarity and functional association information can overcome intrinsic problems in orthology mapping across bacterial genomes.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 22, p. e150, doi. 10.1093/nar/gkr766

By:

Li, Guojun;
Ma, Qin;
Mao, Xizeng;
Yin, Yanbin;
Zhu, Xiaoran;
Xu, Ying

Publication type:

Article

Activation-induced disruption of nucleosome position clusters on the coding regions of Gcn4-dependent genes extends into neighbouring genes.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 22, p. 9521, doi. 10.1093/nar/gkr643

By:

Cole, Hope A.;
Howard, Bruce H.;
Clark, David J.

Publication type:

Article

Prioritizing human cancer microRNAs based on genes’ functional consistency between microRNA and cancer.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 22, p. e153, doi. 10.1093/nar/gkr770

By:

Li, Xia;
Wang, Qianghu;
Zheng, Yan;
Lv, Sali;
Ning, Shangwei;
Sun, Jie;
Huang, Teng;
Zheng, Qifan;
Ren, Huan;
Xu, Jin;
Wang, Xishan;
Li, Yixue

Publication type:

Article

Influence of ground-state structure and Mg2+ binding on folding kinetics of the guanine-sensing riboswitch aptamer domain.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 22, p. 9768, doi. 10.1093/nar/gkr664

By:

Buck, Janina;
Wacker, Anna;
Warkentin, Eberhart;
Wöhnert, Jens;
Wirmer-Bartoschek, Julia;
Schwalbe, Harald

Publication type:

Article

Nucleic Acids Research - Editorial Board.

Published in:: Nucleic Acids Research, 2011, v. 39, n. 22, p. ii, doi. 10.1093/nar/gkr1275
Publication type:: Article

Guiding strand passage: DNA-induced movement of the gyrase C-terminal domains defines an early step in the supercoiling cycle.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 22, p. 9681, doi. 10.1093/nar/gkr680

By:

Lanz, Martin A.;
Klostermeier, Dagmar

Publication type:

Article

Mobilization of giant piggyBac transposons in the mouse genome.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 22, p. e148, doi. 10.1093/nar/gkr764

By:

Li, Meng Amy;
Turner, Daniel J.;
Ning, Zemin;
Yusa, Kosuke;
Liang, Qi;
Eckert, Sabine;
Rad, Lena;
Fitzgerald, Tomas W.;
Craig, Nancy L.;
Bradley, Allan

Publication type:

Article

Thermococcus kodakarensis encodes three MCM homologs but only one is essential.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 22, p. 9671, doi. 10.1093/nar/gkr624

By:

Pan, Miao;
Santangelo, Thomas J.;
Li, Zhuo;
Reeve, John N.;
Kelman, Zvi

Publication type:

Article

Far upstream element binding protein 1 binds the internal ribosomal entry site of enterovirus 71 and enhances viral translation and viral growth.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 22, p. 9633, doi. 10.1093/nar/gkr682

By:

Huang, Peng-Nien;
Lin, Jing-Yi;
Locker, Nicolas;
Kung, Yu-An;
Hung, Chuan-Tien;
Lin, Jhao-Yin;
Huang, Hsing-I;
Li, Mei-Ling;
Shih, Shin-Ru

Publication type:

Article

Cation binding to 15-TBA quadruplex DNA is a multiple-pathway cation-dependent process.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 22, p. 9789, doi. 10.1093/nar/gkr639

By:

Reshetnikov, Roman V.;
Sponer, Jiri;
Rassokhina, Olga I.;
Kopylov, Alexei M.;
Tsvetkov, Philipp O.;
Makarov, Alexander A.;
Golovin, Andrey V.

Publication type:

Article

Simplified RNA secondary structure mapping by automation of SHAPE data analysis.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 22, p. e151, doi. 10.1093/nar/gkr773

By:

Pang, Phillip S.;
Elazar, Menashe;
Pham, Edward A.;
Glenn, Jeffrey S.

Publication type:

Article

Chromatin disruption in the promoter of Bovine Leukemia Virus during transcriptional activation.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 22, p. 9559, doi. 10.1093/nar/gkr671

By:

Colin, Laurence;
Dekoninck, Ann;
Reichert, Michal;
Calao, Miriam;
Merimi, Makram;
Van Den Broeke, Anne;
Vierendeel, Valérie;
Cleuter, Yvette;
Burny, Arsène;
Rohr, Olivier;
Van Lint, Carine

Publication type:

Article

Improved accuracy of supervised CRM discovery with interpolated Markov models and cross-species comparison.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 22, p. 9463, doi. 10.1093/nar/gkr621

By:

Kazemian, Majid;
Zhu, Qiyun;
Halfon, Marc S.;
Sinha, Saurabh

Publication type:

Article

Is the sequence-specific binding of aminoacyl-tRNAs by EF-Tu universal among bacteria?

Published in:

Nucleic Acids Research, 2011, v. 39, n. 22, p. 9746, doi. 10.1093/nar/gkr641

By:

Schrader, Jared M.;
Uhlenbeck, Olke C.

Publication type:

Article

Nucleic Acids Research.

Published in:: Nucleic Acids Research, 2011, v. 39, n. 22, p. i, doi. 10.1093/nar/gkr1276
Publication type:: Article

Rational design of a small molecule-responsive intramer controlling transgene expression in mammalian cells.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 22, p. e155, doi. 10.1093/nar/gkr829

By:

Ausländer, David;
Wieland, Markus;
Ausländer, Simon;
Tigges, Marcel;
Fussenegger, Martin

Publication type:

Article

Role of sequence encoded κB DNA geometry in gene regulation by Dorsal.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 22, p. 9574, doi. 10.1093/nar/gkr672

By:

Mrinal, Nirotpal;
Tomar, Archana;
Nagaraju, Javaregowda

Publication type:

Article

Label-free high-throughput microRNA expression profiling from total RNA.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 22, p. e154, doi. 10.1093/nar/gkr774

By:

Duan, Demin;
Zheng, Ke-xiao;
Shen, Ye;
Cao, Rong;
Jiang, Li;
Lu, Zhuoxuan;
Yan, Xiyun;
Li, Jiong

Publication type:

Article

Evolution of the deaminase fold and multiple origins of eukaryotic editing and mutagenic nucleic acid deaminases from bacterial toxin systems.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 22, p. 9473, doi. 10.1093/nar/gkr691

By:

Iyer, Lakshminarayan M.;
Zhang, Dapeng;
Rogozin, Igor B.;
Aravind, L.

Publication type:

Article

SIRT1 links CIITA deacetylation to MHC II activation.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 22, p. 9549, doi. 10.1093/nar/gkr651

By:

Wu, Xiaoyan;
Kong, Xiaocen;
Chen, Dewei;
Li, He;
Zhao, Yuhao;
Xia, Minjie;
Fang, Mingming;
Li, Ping;
Fang, Fei;
Sun, Lina;
Tian, Wenfang;
Xu, Huihui;
Yang, Yuyu;
Qi, Xiaohong;
Gao, Yuqi;
Sha, Jiahao;
Chen, Qi;
Xu, Yong

Publication type:

Article