Works matching IS 03051048 AND DT 2011 AND VI 39 AND IP 21

Results: 45

A single methyltransferase YefA (RlmCD) catalyses both m5U747 and m5U1939 modifications in Bacillus subtilis 23S rRNA.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 21, p. 9368, doi. 10.1093/nar/gkr626

By:

Desmolaize, Benoit;
Fabret, Céline;
Brégeon, Damien;
Rose, Simon;
Grosjean, Henri;
Douthwaite, Stephen

Publication type:

Article

Methods for L-ribooligonucleotide sequence determination using LCMS.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 21, p. e147, doi. 10.1093/nar/gkr776

By:

Turner, John J.;
Hoos, Johannes S.;
Vonhoff, Stefan;
Klussmann, Sven

Publication type:

Article

ecoPrimers: inference of new DNA barcode markers from whole genome sequence analysis.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 21, p. e145, doi. 10.1093/nar/gkr732

By:

Riaz, Tiayyba;
Shehzad, Wasim;
Viari, Alain;
Pompanon, François;
Taberlet, Pierre;
Coissac, Eric

Publication type:

Article

Nucleic Acids Research.

Published in:: Nucleic Acids Research, 2011, v. 39, n. 21, p. i, doi. 10.1093/nar/gkr1200
Publication type:: Article

Transcription factories in the context of the nuclear and genome organization.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 21, p. 9085, doi. 10.1093/nar/gkr683

By:

Razin, S. V.;
Gavrilov, A. A.;
Pichugin, A.;
Lipinski, M.;
Iarovaia, O. V.;
Vassetzky, Yegor S.

Publication type:

Article

Comparative characterization of the PvuRts1I family of restriction enzymes and their application in mapping genomic 5-hydroxymethylcytosine.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 21, p. 9294, doi. 10.1093/nar/gkr607

By:

Wang, Hua;
Guan, Shengxi;
Quimby, Aine;
Cohen-Karni, Devora;
Pradhan, Sriharsa;
Wilson, Geoffrey;
Roberts, Richard J.;
Zhu, Zhenyu;
Zheng, Yu

Publication type:

Article

The miRNA pathway limits AGO1 availability during siRNA-mediated PTGS defense against exogenous RNA.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 21, p. 9339, doi. 10.1093/nar/gkr590

By:

Martínez de Alba, Angel Emilio;
Jauvion, Vincent;
Mallory, Allison C.;
Bouteiller, Nathalie;
Vaucheret, Hervé

Publication type:

Article

Reporter mRNAs cleaved by Rnt1p are exported and degraded in the cytoplasm.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 21, p. 9357, doi. 10.1093/nar/gkr627

By:

Meaux, Stacie;
Lavoie, Mathieu;
Gagnon, Jules;
Abou Elela, Sherif;
van Hoof, Ambro

Publication type:

Article

The SRSF1 linker induces semi-conservative ESE binding by cooperating with the RRMs.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 21, p. 9413, doi. 10.1093/nar/gkr663

By:

Cho, Suhyung;
Hoang, Amy;
Chakrabarti, Sutapa;
Huynh, Nhat;
Huang, De-Bin;
Ghosh, Gourisankar

Publication type:

Article

A new, highly conserved domain in Swi2/Snf2 is required for SWI/SNF remodeling.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 21, p. 9155, doi. 10.1093/nar/gkr622

By:

Sen, Payel;
Ghosh, Sujana;
Pugh, B. Franklin;
Bartholomew, Blaine

Publication type:

Article

Zinc-finger recombinase activities in vitro.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 21, p. 9316, doi. 10.1093/nar/gkr652

By:

Prorocic, Marko M.;
Wenlong, Dong;
Olorunniji, Femi J.;
Akopian, Aram;
Schloetel, Jan-Gero;
Hannigan, Adèle;
McPherson, Arlene L.;
Stark, W. Marshall

Publication type:

Article

Phosphorylation of polynucleotide kinase/ phosphatase by DNA-dependent protein kinase and ataxia-telangiectasia mutated regulates its association with sites of DNA damage.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 21, p. 9224, doi. 10.1093/nar/gkr647

By:

Zolner, Angela E.;
Abdou, Ismail;
Ye, Ruiqiong;
Mani, Rajam S.;
Fanta, Mesfin;
Yu, Yaping;
Douglas, Pauline;
Tahbaz, Nasser;
Fang, Shujuan;
Dobbs, Tracey;
Wang, Chen;
Morrice, Nick;
Hendzel, Michael J.;
Weinfeld, Michael;
Lees-Miller, Susan P.

Publication type:

Article

Cleavage of intron from the standard or non-standard position of the precursor tRNA by the splicing endonuclease of Aeropyrum pernix, a hyper-thermophilic Crenarchaeon, involves a novel RNA recognition site in the Crenarchaea specific loop.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 21, p. 9376, doi. 10.1093/nar/gkr615

By:

Hirata, Akira;
Kitajima, Tsubasa;
Hori, Hiroyuki

Publication type:

Article

Nucleic Acids Research - Editorial Board.

Published in:: Nucleic Acids Research, 2011, v. 39, n. 21, p. ii, doi. 10.1093/nar/gkr1199
Publication type:: Article

Identification and remediation of biases in the activity of RNA ligases in small-RNA deep sequencing.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 21, p. e141, doi. 10.1093/nar/gkr693

By:

Jayaprakash, Anitha D.;
Jabado, Omar;
Brown, Brian D.;
Sachidanandam, Ravi

Publication type:

Article

The downstream atpE cistron is efficiently translated via its own cis-element in partially overlapping atpB–atpE dicistronic mRNAs in chloroplasts.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 21, p. 9405, doi. 10.1093/nar/gkr644

By:

Suzuki, Haruka;
Kuroda, Hiroshi;
Yukawa, Yasushi;
Sugiura, Masahiro

Publication type:

Article

Stacking of G-quadruplexes: NMR structure of a G-rich oligonucleotide with potential anti-HIV and anticancer activity†.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 21, p. 9448, doi. 10.1093/nar/gkr539

By:

Do, Ngoc Quang;
Lim, Kah Wai;
Teo, Ming Hoon;
Heddi, Brahim;
Phan, Anh Tuân

Publication type:

Article

A novel TALE nuclease scaffold enables high genome editing activity in combination with low toxicity.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 21, p. 9283, doi. 10.1093/nar/gkr597

By:

Mussolino, Claudio;
Morbitzer, Robert;
Lütge, Fabienne;
Dannemann, Nadine;
Lahaye, Thomas;
Cathomen, Toni

Publication type:

Article

Clustering of Alpers disease mutations and catalytic defects in biochemical variants reveal new features of molecular mechanism of the human mitochondrial replicase, Pol γ.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 21, p. 9072, doi. 10.1093/nar/gkr618

By:

Euro, Liliya;
Farnum, Gregory A.;
Palin, Eino;
Suomalainen, Anu;
Kaguni, Laurie S.

Publication type:

Article

Gln-tRNAGln synthesis in a dynamic transamidosome from Helicobacter pylori, where GluRS2 hydrolyzes excess Glu-tRNAGln.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 21, p. 9306, doi. 10.1093/nar/gkr619

By:

Huot, Jonathan L.;
Fischer, Frédéric;
Corbeil, Jacques;
Madore, Éric;
Lorber, Bernard;
Diss, Guillaume;
Hendrickson, Tamara L.;
Kern, Daniel;
Lapointe, Jacques

Publication type:

Article

Nucleoside modifications in RNA limit activation of 2′-5′-oligoadenylate synthetase and increase resistance to cleavage by RNase L.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 21, p. 9329, doi. 10.1093/nar/gkr586

By:

Anderson, Bart R.;
Muramatsu, Hiromi;
Jha, Babal K.;
Silverman, Robert H.;
Weissman, Drew;
Karikó, Katalin

Publication type:

Article

Identifying transcriptional start sites of human microRNAs based on high-throughput sequencing data.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 21, p. 9345, doi. 10.1093/nar/gkr604

By:

Chien, Chia-Hung;
Sun, Yi-Ming;
Chang, Wen-Chi;
Chiang-Hsieh, Pei-Yun;
Lee, Tzong-Yi;
Tsai, Wei-Chih;
Horng, Jorng-Tzong;
Tsou, Ann-Ping;
Huang, Hsien-Da

Publication type:

Article

The DEAH-box RNA helicase RHAU binds an intramolecular RNA G‐quadruplex in TERC and associates with telomerase holoenzyme.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 21, p. 9390, doi. 10.1093/nar/gkr630

By:

Lattmann, Simon;
Stadler, Michael B.;
Vaughn, James P.;
Akman, Steven A.;
Nagamine, Yoshikuni

Publication type:

Article

Nuclear hormone 1α,25-dihydroxyvitamin D3 elicits a genome-wide shift in the locations of VDR chromatin occupancy.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 21, p. 9181, doi. 10.1093/nar/gkr654

By:

Heikkinen, Sami;
Väisänen, Sami;
Pehkonen, Petri;
Seuter, Sabine;
Benes, Vladimir;
Carlberg, Carsten

Publication type:

Article

Bayesian multiple-instance motif discovery with BAMBI: inference of recombinase and transcription factor binding sites.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 21, p. e146, doi. 10.1093/nar/gkr745

By:

Jajamovich, Guido H.;
Wang, Xiaodong;
Arkin, Adam P.;
Samoilov, Michael S.

Publication type:

Article

Characterization of the DNA binding specificity of Shelterin complexes.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 21, p. 9206, doi. 10.1093/nar/gkr665

By:

Choi, Kyung H.;
Farrell, Amy S.;
Lakamp, Amanda S.;
Ouellette, Michel M.

Publication type:

Article

Daedalus: a robust, turnkey platform for rapid production of decigram quantities of active recombinant proteins in human cell lines using novel lentiviral vectors.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 21, p. e143, doi. 10.1093/nar/gkr706

By:

Bandaranayake, Ashok D.;
Correnti, Colin;
Ryu, Byoung Y.;
Brault, Michelle;
Strong, Roland K.;
Rawlings, David J.

Publication type:

Article

From crystal and NMR structures, footprints and cryo-electron-micrographs to large and soft structures: nanoscale modeling of the nucleosomal stem.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 21, p. 9139, doi. 10.1093/nar/gkr573

By:

Meyer, Sam;
Becker, Nils B.;
Syed, Sajad Hussain;
Goutte-Gattat, Damien;
Shukla, Manu Shubhdarshan;
Hayes, Jeffrey J.;
Angelov, Dimitar;
Bednar, Jan;
Dimitrov, Stefan;
Everaers, Ralf

Publication type:

Article

Synthesis, base pairing properties and trans-lesion synthesis by reverse transcriptases of oligoribonucleotides containing the oxidatively damaged base 5-hydroxycytidine.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 21, p. 9422, doi. 10.1093/nar/gkr673

By:

Küpfer, Pascal A.;
Leumann, Christian J.

Publication type:

Article

Organelle trafficking of chimeric ribozymes and genetic manipulation of mitochondria.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 21, p. 9262, doi. 10.1093/nar/gkr580

By:

Val, Romain;
Wyszko, Eliza;
Valentin, Clarisse;
Szymanski, Maciej;
Cosset, Anne;
Alioua, Malek;
Dreher, Theo W.;
Barciszewski, Jan;
Dietrich, André

Publication type:

Article

The mitochondrial DNA helicase TWINKLE can assemble on a closed circular template and support initiation of DNA synthesis.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 21, p. 9238, doi. 10.1093/nar/gkr653

By:

Jemt, Elisabeth;
Farge, Géraldine;
Bäckström, Stefan;
Holmlund, Teresa;
Gustafsson, Claes M.;
Falkenberg, Maria

Publication type:

Article

The RNA polymerase activity of SARS-coronavirus nsp12 is primer dependent.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 21, p. 9458, doi. 10.1093/nar/gkr963

By:

te Velthuis, Aartjan J. W.;
Arnold, Jamie J.;
Cameron, Craig E.;
van den Worm, Sjoerd H. E.;
Snijder, Eric J.

Publication type:

Article

Selective requirement of H2B N-Terminal tail for p14ARF-induced chromatin silencing.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 21, p. 9167, doi. 10.1093/nar/gkr642

By:

Choi, Jongkyu;
Kim, Hyunjung;
Kim, Kyunghwan;
Lee, Bomi;
Lu, Wange;
An, Woojin

Publication type:

Article

Polynucleotide phosphorylase exonuclease and polymerase activities on single-stranded DNA ends are modulated by RecN, SsbA and RecA proteins.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 21, p. 9250, doi. 10.1093/nar/gkr635

By:

Cardenas, Paula P.;
Carzaniga, Thomas;
Zangrossi, Sandro;
Briani, Federica;
Garcia-Tirado, Esther;
Dehò, Gianni;
Alonso, Juan C.

Publication type:

Article

Regulation of SNAIL1 and E-cadherin function by DNMT1 in a DNA methylation-independent context.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 21, p. 9194, doi. 10.1093/nar/gkr658

By:

Espada, Jesús;
Peinado, Hector;
Lopez-Serra, Lidia;
Setién, Fernando;
Lopez-Serra, Paula;
Portela, Anna;
Renart, Jaime;
Carrasco, Elisa;
Calvo, María;
Juarranz, Angeles;
Cano, Amparo;
Esteller, Manel

Publication type:

Article

Sequential binding and sensing of Zn(II) by Bacillus subtilis Zur.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 21, p. 9130, doi. 10.1093/nar/gkr625

By:

Ma, Zhen;
Gabriel, Scott E.;
Helmann, John D.

Publication type:

Article

Towards an accurate identification of mosaic genes and partial horizontal gene transfers.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 21, p. e144, doi. 10.1093/nar/gkr735

By:

Boc, Alix;
Makarenkov, Vladimir

Publication type:

Article

The Streptococcus thermophilus CRISPR/Cas system provides immunity in Escherichia coli.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 21, p. 9275, doi. 10.1093/nar/gkr606

By:

Sapranauskas, Rimantas;
Gasiunas, Giedrius;
Fremaux, Christophe;
Barrangou, Rodolphe;
Horvath, Philippe;
Siksnys, Virginijus

Publication type:

Article

Measuring cell identity in noisy biological systems.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 21, p. 9093, doi. 10.1093/nar/gkr591

By:

Birnbaum, Kenneth D.;
Kussell, Edo

Publication type:

Article

Subscriptions.

Published in:: Nucleic Acids Research, 2011, v. 39, n. 21, p. iii, doi. 10.1093/nar/gkr1201
Publication type:: Article

Structural and functional organization of RNA regulons in the post-transcriptional regulatory network of yeast.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 21, p. 9108, doi. 10.1093/nar/gkr661

By:

Joshi, Anagha;
Van de Peer, Yves;
Michoel, Tom

Publication type:

Article

Handpicking epigenetic marks with PHD fingers.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 21, p. 9061, doi. 10.1093/nar/gkr613

By:

Musselman, Catherine A.;
Kutateladze, Tatiana G.

Publication type:

Article

The crystal structure of the TetR family transcriptional repressor SimR bound to DNA and the role of a flexible N-terminal extension in minor groove binding.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 21, p. 9433, doi. 10.1093/nar/gkr640

By:

Le, Tung B. K.;
Schumacher, Maria A.;
Lawson, David M.;
Brennan, Richard G.;
Buttner, Mark J.

Publication type:

Article

Generating the optimal mRNA for therapy: HPLC purification eliminates immune activation and improves translation of nucleoside-modified, protein-encoding mRNA.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 21, p. e142, doi. 10.1093/nar/gkr695

By:

Karikó, Katalin;
Muramatsu, Hiromi;
Ludwig, János;
Weissman, Drew

Publication type:

Article

A coarse-grained force field for Protein–RNA docking.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 21, p. 9118, doi. 10.1093/nar/gkr636

By:

Setny, Piotr;
Zacharias, Martin

Publication type:

Article