Works matching IS 03051048 AND DT 2011 AND VI 39 AND IP 20

Results: 43

Transgenic zebrafish model to study translational control mediated by upstream open reading frame of human chop gene.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 20, p. e139, doi. 10.1093/nar/gkr645

By:

Lee, Hung-Chieh;
Chen, Yi-Jiun;
Liu, Yu-Wei;
Lin, Kai-Yen;
Chen, Shaio-Wen;
Lin, Cheng-Yung;
Lu, Yi-Chin;
Hsu, Pei-Chun;
Lee, Sheng-Chung;
Tsai, Huai-Jen

Publication type:

Article

Epigenetic regulation of transcription and splicing of syncytins, fusogenic glycoproteins of retroviral origin.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 20, p. 8728

By:

Trejbalová, Kateřina;
Blažková, Jana;
Matoušková, Magda;
Kučerová, Dana;
Pecnová, Lubomíra;
Vernerová, Zdenka;
Heráček, Jiří;
Hirsch, Ivan;
Hejnar, Jiří

Publication type:

Article

Changes in the tension in dsDNA alter the conformation of RecA bound to dsDNA–RecA filaments.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 20, p. 8833, doi. 10.1093/nar/gkr561

By:

Conover, Alyson J.;
Danilowicz, Claudia;
Gunaratne, Ruwan;
Coljee, Vincent W.;
Kleckner, Nancy;
Prentiss, Mara

Publication type:

Article

c-MYC promoter G-quadruplex formed at the 5′-end of NHE III1 element: insights into biological relevance and parallel-stranded G-quadruplex stability.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 20, p. 9023, doi. 10.1093/nar/gkr612

By:

Mathad, Raveendra I.;
Hatzakis, Emmanuel;
Dai, Jixun;
Yang, Danzhou

Publication type:

Article

Quaternary structure of the specific p53–DNA complex reveals the mechanism of p53 mutant dominance.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 20, p. 8960, doi. 10.1093/nar/gkr386

By:

Aramayo, Ricardo;
Sherman, Michael B.;
Brownless, Kathryne;
Lurz, Rudi;
Okorokov, Andrei L.;
Orlova, Elena V.

Publication type:

Article

Local sensing of global DNA topology: from crossover geometry to type II topoisomerase processivity.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 20, p. 8665, doi. 10.1093/nar/gkr556

By:

Timsit, Youri

Publication type:

Article

Impartial comparative analysis of measurement of leukocyte telomere length/DNA content by Southern blots and qPCR.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 20, p. e134, doi. 10.1093/nar/gkr634

By:

Aviv, Abraham;
Hunt, Steven C.;
Lin, Jue;
Cao, Xiaojian;
Kimura, Masayuki;
Blackburn, Elizabeth

Publication type:

Article

ChIP-seq reveals cell type-specific binding patterns of BMP-specific Smads and a novel binding motif.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 20, p. 8712, doi. 10.1093/nar/gkr572

By:

Morikawa, Masato;
Koinuma, Daizo;
Tsutsumi, Shuichi;
Vasilaki, Eleftheria;
Kanki, Yasuharu;
Heldin, Carl-Henrik;
Aburatani, Hiroyuki;
Miyazono, Kohei

Publication type:

Article

Two RNA-binding sites in plant fibrillarin provide interactions with various RNA substrates.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 20, p. 8869, doi. 10.1093/nar/gkr594

By:

Rakitina, D. V.;
Taliansky, Michael;
Brown, J. W. S.;
Kalinina, N. O.

Publication type:

Article

An activated triple bond linker enables ‘click’ attachment of peptides to oligonucleotides on solid support.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 20, p. 9047, doi. 10.1093/nar/gkr603

By:

Wenska, Malgorzata;
Alvira, Margarita;
Steunenberg, Peter;
Stenberg, Åsa;
Murtola, Merita;
Strömberg, Roger

Publication type:

Article

Transcriptional gene network inference from a massive dataset elucidates transcriptome organization and gene function.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 20, p. 8677, doi. 10.1093/nar/gkr593

By:

Belcastro, Vincenzo;
Siciliano, Velia;
Gregoretti, Francesco;
Mithbaokar, Pratibha;
Dharmalingam, Gopuraja;
Berlingieri, Stefania;
Iorio, Francesco;
Oliva, Gennaro;
Polishchuck, Roman;
Brunetti-Pierri, Nicola;
di Bernardo, Diego

Publication type:

Article

Misannotations of rRNA can now generate 90% false positive protein matches in metatranscriptomic studies.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 20, p. 8792, doi. 10.1093/nar/gkr576

By:

Tripp, H. James;
Hewson, Ian;
Boyarsky, Sam;
Stuart, Joshua M.;
Zehr, Jonathan P.

Publication type:

Article

Subscriptions.

Published in:: Nucleic Acids Research, 2011, v. 39, n. 20, p. iii, doi. 10.1093/nar/gkr1036
Publication type:: Article

Diverse substrate recognition and hydrolysis mechanisms of human NUDT5.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 20, p. 8972, doi. 10.1093/nar/gkr575

By:

Arimori, Takao;
Tamaoki, Haruhiko;
Nakamura, Teruya;
Kamiya, Hiroyuki;
Ikemizu, Shinji;
Takagi, Yasumitsu;
Ishibashi, Toru;
Harashima, Hideyoshi;
Sekiguchi, Mutsuo;
Yamagata, Yuriko

Publication type:

Article

The Swi2–Snf2-like protein Uls1 is involved in replication stress response.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 20, p. 8765, doi. 10.1093/nar/gkr587

By:

Cal-Bąkowska, Magdalena;
Litwin, Ireneusz;
Bocer, Tomasz;
Wysocki, Robert;
Dziadkowiec, Dorota

Publication type:

Article

CAG repeats mimic CUG repeats in the misregulation of alternative splicing.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 20, p. 8938, doi. 10.1093/nar/gkr608

By:

Mykowska, Agnieszka;
Sobczak, Krzysztof;
Wojciechowska, Marzena;
Kozlowski, Piotr;
Krzyzosiak, Wlodzimierz J.

Publication type:

Article

Cell type specific, traceable gene silencing for functional gene analysis during vertebrate neural development.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 20, p. e133, doi. 10.1093/nar/gkr628

By:

Wilson, Nicole H.;
Stoeckli, Esther T.

Publication type:

Article

Stem–loop structures can effectively substitute for an RNA pseudoknot in −1 ribosomal frameshifting.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 20, p. 8952

By:

Yu, Chien-Hung;
Noteborn, Mathieu H.;
Pleij, Cornelis W. A.;
Olsthoorn, René C. L.

Publication type:

Article

Tup1 stabilizes promoter nucleosome positioning and occupancy at transcriptionally plastic genes.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 20, p. 8803, doi. 10.1093/nar/gkr557

By:

Rizzo, Jason M.;
Mieczkowski, Piotr A.;
Buck, Michael J.

Publication type:

Article

Conformational change of single-stranded RNAs induced by liposome binding.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 20, p. 8891, doi. 10.1093/nar/gkr568

By:

Suga, Keishi;
Tanabe, Tomoyuki;
Tomita, Hibiki;
Shimanouchi, Toshinori;
Umakoshi, Hiroshi

Publication type:

Article

Repeat expansion in the budding yeast ribosomal DNA can occur independently of the canonical homologous recombination machinery.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 20, p. 8778, doi. 10.1093/nar/gkr589

By:

Houseley, Jonathan;
Tollervey, David

Publication type:

Article

Resistance of bulky DNA lesions to nucleotide excision repair can result from extensive aromatic lesion–base stacking interactions.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 20, p. 8752, doi. 10.1093/nar/gkr537

By:

Reeves, Dara A.;
Mu, Hong;
Kropachev, Konstantin;
Cai, Yuqin;
Ding, Shuang;
Kolbanovskiy, Alexander;
Kolbanovskiy, Marina;
Chen, Ying;
Krzeminski, Jacek;
Amin, Shantu;
Patel, Dinshaw J.;
Broyde, Suse;
Geacintov, Nicholas E.

Publication type:

Article

Target site cleavage by the monomeric restriction enzyme BcnI requires translocation to a random DNA sequence and a switch in enzyme orientation.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 20, p. 8844, doi. 10.1093/nar/gkr588

By:

Sasnauskas, Giedrius;
Kostiuk, Georgij;
Tamulaitis, Gintautas;
Siksnys, Virginijus

Publication type:

Article

Computational design of synthetic regulatory networks from a genetic library to characterize the designability of dynamical behaviors.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 20, p. e138, doi. 10.1093/nar/gkr616

By:

Rodrigo, Guillermo;
Carrera, Javier;
Jaramillo, Alfonso

Publication type:

Article

Role of tRNA amino acid-accepting end in aminoacylation and its quality control.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 20, p. 8857, doi. 10.1093/nar/gkr595

By:

Zhou, Xiao-Long;
Du, Dao-Hai;
Tan, Min;
Lei, Hui-Yan;
Ruan, Liang-Liang;
Eriani, Gilbert;
Wang, En-Duo

Publication type:

Article

ParaDock: a flexible non-specific DNA—rigid protein docking algorithm.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 20, p. e135, doi. 10.1093/nar/gkr620

By:

Banitt, Itamar;
Wolfson, Haim J.

Publication type:

Article

Enhancers regulate progression of development in mammalian cells.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 20, p. 8689, doi. 10.1093/nar/gkr602

By:

Kranz, Anna-Lena;
Eils, Roland;
König, Rainer

Publication type:

Article

Nucleic Acids Research.

Published in:: Nucleic Acids Research, 2011, v. 39, n. 20, p. i, doi. 10.1093/nar/gkr1035
Publication type:: Article

Cytosine methylation alters DNA mechanical properties.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 20, p. 8740, doi. 10.1093/nar/gkr578

By:

Severin, Philip M. D.;
Zou, Xueqing;
Gaub, Hermann E.;
Schulten, Klaus

Publication type:

Article

The microRNA body map: dissecting microRNA function through integrative genomics.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 20, p. e136, doi. 10.1093/nar/gkr646

By:

Mestdagh, Pieter;
Lefever, Steve;
Pattyn, Filip;
Ridzon, Dana;
Fredlund, Erik;
Fieuw, Annelies;
Ongenaert, Maté;
Vermeulen, Joëlle;
De Paepe, Anne;
Wong, Linda;
Speleman, Frank;
Chen, Caifu;
Vandesompele, Jo

Publication type:

Article

hnRNP Q mediates a phase-dependent translation-coupled mRNA decay of mouse Period3.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 20, p. 8901, doi. 10.1093/nar/gkr605

By:

Kim, Do-Yeon;
Kwak, Eunyee;
Kim, Sung-Hoon;
Lee, Kyung-Ha;
Woo, Kyung-Chul;
Kim, Kyong-Tai

Publication type:

Article

Nucleic Acids Research - Editorial Board.

Published in:: Nucleic Acids Research, 2011, v. 39, n. 20, p. ii, doi. 10.1093/nar/gkr1034
Publication type:: Article

Duplex-specific nuclease efficiently removes rRNA for prokaryotic RNA-seq.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 20, p. e140, doi. 10.1093/nar/gkr617

By:

Yi, Hana;
Cho, Yong-Joon;
Won, Sungho;
Lee, Jong-Eun;
Jin Yu, Hyung;
Kim, Sujin;
Schroth, Gary P.;
Luo, Shujun;
Chun, Jongsik

Publication type:

Article

Structural basis for nematode eIF4E binding an m2,2,7G-Cap and its implications for translation initiation.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 20, p. 8820, doi. 10.1093/nar/gkr650

By:

Liu, Weizhi;
Jankowska-Anyszka, Marzena;
Piecyk, Karolina;
Dickson, Laura;
Wallace, Adam;
Niedzwiecka, Anna;
Stepinski, Janusz;
Stolarski, Ryszard;
Darzynkiewicz, Edward;
Kieft, Jeffrey;
Zhao, Rui;
Jones, David N. M.;
Davis, Richard E.

Publication type:

Article

Efficient internal exon recognition depends on near equal contributions from the 3′ and 5′ splice sites.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 20, p. 8928, doi. 10.1093/nar/gkr481

By:

Shepard, Peter J.;
Choi, Eun-A.;
Busch, Anke;
Hertel, Klemens J.

Publication type:

Article

Molecular basis of the recognition of the ap65-1 gene transcription promoter elements by a Myb protein from the protozoan parasite Trichomonas vaginalis.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 20, p. 8992, doi. 10.1093/nar/gkr558

By:

Jiang, Ingjye;
Tsai, Chen-Kun;
Chen, Sheng-Chia;
Wang, Szu-huan;
Amiraslanov, Imamaddin;
Chang, Chi-Fon;
Wu, Wen-Jin;
Tai, Jung-Hsiang;
Liaw, Yen-Chywan;
Huang, Tai-huang

Publication type:

Article

HIV-1 integrase inhibitor T30177 forms a stacked dimeric G-quadruplex structure containing bulges.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 20, p. 8984, doi. 10.1093/nar/gkr540

By:

Mukundan, Vineeth Thachappilly;
Do, Ngoc Quang;
Phan, Anh Tuân

Publication type:

Article

FRET analysis reveals distinct conformations of IN tetramers in the presence of viral DNA or LEDGF/p75.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 20, p. 9009, doi. 10.1093/nar/gkr581

By:

Kessl, Jacques J.;
Li, Min;
Ignatov, Michael;
Shkriabai, Nikolozi;
Eidahl, Jocelyn O.;
Feng, Lei;
Musier-Forsyth, Karin;
Craigie, Robert;
Kvaratskhelia, Mamuka

Publication type:

Article

Targeted isolation of cloned genomic regions by recombineering for haplotype phasing and isogenic targeting.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 20, p. e137, doi. 10.1093/nar/gkr668

By:

Nedelkova, Marta;
Maresca, Marcello;
Fu, Jun;
Rostovskaya, Maria;
Chenna, Ramu;
Thiede, Christian;
Anastassiadis, Konstantinos;
Sarov, Mihail;
Stewart, A. Francis

Publication type:

Article

Role of HIV-1 RNA and protein determinants for the selective packaging of spliced and unspliced viral RNA and host U6 and 7SL RNA in virus particles.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 20, p. 8915, doi. 10.1093/nar/gkr577

By:

Didierlaurent, L.;
Racine, P. J.;
Houzet, L.;
Chamontin, C.;
Berkhout, B.;
Mougel, M.

Publication type:

Article

Selective inhibition of MBNL1–CCUG interaction by small molecules toward potential therapeutic agents for myotonic dystrophy type 2 (DM2)†.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 20, p. 8881, doi. 10.1093/nar/gkr415

By:

Wong, Chun-Ho;
Fu, Yuan;
Ramisetty, Sreenivasa Rao;
Baranger, Anne M.;
Zimmerman, Steven C.

Publication type:

Article

Mechanism of the piRNA-mediated silencing of Drosophila telomeric retrotransposons.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 20, p. 8703, doi. 10.1093/nar/gkr552

By:

Shpiz, Sergey;
Olovnikov, Ivan;
Sergeeva, Anna;
Lavrov, Sergey;
Abramov, Yuri;
Savitsky, Mikhail;
Kalmykova, Alla

Publication type:

Article

Evolutionary genome engineering using a restriction–modification system.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 20, p. 9034, doi. 10.1093/nar/gkr585

By:

Asakura, Yoko;
Kojima, Hiroyuki;
Kobayashi, Ichizo

Publication type:

Article