Works matching IS 03051048 AND DT 2011 AND VI 39 AND IP 19

Results: 39

Reconstitution of a functional IS608 single-strand transpososome: role of non-canonical base pairing.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 19, p. 8503, doi. 10.1093/nar/gkr566

By:

He, Susu;
Hickman, Alison B.;
Dyda, Fred;
Johnson, Neil P.;
Chandler, Michael;
Ton-Hoang, Bao

Publication type:

Article

Targeted bisulfite sequencing by solution hybrid selection and massively parallel sequencing.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 19, p. e127, doi. 10.1093/nar/gkr598

By:

Lee, Eun-Joon;
Pei, Lirong;
Srivastava, Gyan;
Joshi, Trupti;
Kushwaha, Garima;
Choi, Jeong-Hyeon;
Robertson, Keith D.;
Wang, Xinguo;
Colbourne, John K.;
Zhang, Lu;
Schroth, Gary P.;
Xu, Dong;
Zhang, Kun;
Shi, Huidong

Publication type:

Article

A quantitative model of nucleosome dynamics.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 19, p. 8306, doi. 10.1093/nar/gkr422

By:

Forties, Robert A.;
North, Justin A.;
Javaid, Sarah;
Tabbaa, Omar P.;
Fishel, Richard;
Poirier, Michael G.;
Bundschuh, Ralf

Publication type:

Article

Histone modifications influence mediator interactions with chromatin.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 19, p. 8342, doi. 10.1093/nar/gkr551

By:

Zhu, Xuefeng;
Zhang, Yongqiang;
Bjornsdottir, Gudrun;
Liu, Zhongle;
Quan, Amy;
Costanzo, Michael;
Dávila López, Marcela;
Westholm, Jakub Orzechowski;
Ronne, Hans;
Boone, Charles;
Gustafsson, Claes M.;
Myers, Lawrence C.

Publication type:

Article

Nucleic Acids Research.

Published in:: Nucleic Acids Research, 2011, v. 39, n. 19, p. i, doi. 10.1093/nar/gkr1037
Publication type:: Article

Histone H3 tail acetylation modulates ATP-dependent remodeling through multiple mechanisms.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 19, p. 8378, doi. 10.1093/nar/gkr535

By:

Chatterjee, Nilanjana;
Sinha, Divya;
Lemma-Dechassa, Mekonnen;
Tan, Song;
Shogren-Knaak, Michael A.;
Bartholomew, Blaine

Publication type:

Article

Analysis of nucleic acid chaperoning by the prion protein and its inhibition by oligonucleotides.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 19, p. 8544, doi. 10.1093/nar/gkr554

By:

Guichard, Cécile;
Ivanyi-Nagy, Roland;
Sharma, Kamal Kant;
Gabus, Caroline;
Marc, Daniel;
Mély, Yves;
Darlix, Jean-Luc

Publication type:

Article

Sequence determinants for the tandem recognition of UGU and CUG rich RNA elements by the two N—terminal RRMs of CELF1.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 19, p. 8638, doi. 10.1093/nar/gkr510

By:

Edwards, John;
Malaurie, Emilie;
Kondrashov, Alexander;
Long, Jed;
de Moor, Cornelia H.;
Searle, Mark S.;
Emsley, Jonas

Publication type:

Article

Structural basis for the biological relevance of the invariant apical stem in IRES-mediated translation.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 19, p. 8572

By:

Fernández, Noemí;
Fernandez-Miragall, Olga;
Ramajo, Jorge;
García-Sacristán, Ana;
Bellora, Nicolás;
Eyras, Eduardo;
Briones, Carlos;
Martínez-Salas, Encarnación

Publication type:

Article

Yeast two-hybrid junk sequences contain selected linear motifs.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 19, p. e128, doi. 10.1093/nar/gkr600

By:

Liu, Yun;
Woods, Nicholas T.;
Kim, Dewey;
Sweet, Michael;
Monteiro, Alvaro N. A.;
Karchin, Rachel

Publication type:

Article

Histone variant H3.3 stimulates HSP70 transcription through cooperation with HP1γ.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 19, p. 8329, doi. 10.1093/nar/gkr529

By:

Kim, Hyunjung;
Heo, Kyu;
Choi, Jongkyu;
Kim, Kyunghwan;
An, Woojin

Publication type:

Article

Efficiently identifying genome-wide changes with next-generation sequencing data.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 19, p. e130, doi. 10.1093/nar/gkr592

By:

Huang, Weichun;
Umbach, David M.;
Vincent Jordan, Nicole;
Abell, Amy N.;
Johnson, Gary L.;
Li, Leping

Publication type:

Article

Ultra-deep pyrosequencing analysis of the hepatitis B virus preCore region and main catalytic motif of the viral polymerase in the same viral genome.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 19, p. 8457, doi. 10.1093/nar/gkr451

By:

Homs, Maria;
Buti, Maria;
Quer, Josep;
Jardí, Rosendo;
Schaper, Melanie;
Tabernero, David;
Ortega, Israel;
Sanchez, Alex;
Esteban, Rafael;
Rodriguez-Frias, Francisco

Publication type:

Article

The dimer state of GyrB is an active form: implications for the initial complex assembly and processive strand passage.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 19, p. 8488, doi. 10.1093/nar/gkr553

By:

Wu, Jinjun;
Zhang, Zhiping;
Mitchenall, Lesley A.;
Maxwell, Anthony;
Deng, Jiaoyu;
Zhang, Hongtai;
Zhou, Ying;
Chen, Yuan-yuan;
Wang, Da-Cheng;
Zhang, Xian-En;
Bi, Lijun

Publication type:

Article

Molecular sensing by the aptamer domain of the FMN riboswitch: a general model for ligand binding by conformational selection.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 19, p. 8586, doi. 10.1093/nar/gkr565

By:

Vicens, Quentin;
Mondragón, Estefanía;
Batey, Robert T.

Publication type:

Article

UNG-initiated base excision repair is the major repair route for 5-fluorouracil in DNA, but 5-fluorouracil cytotoxicity depends mainly on RNA incorporation.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 19, p. 8430, doi. 10.1093/nar/gkr563

By:

Pettersen, Henrik Sahlin;
Visnes, Torkild;
Vågbø, Cathrine Broberg;
Svaasand, Eva. K.;
Doseth, Berit;
Slupphaug, Geir;
Kavli, Bodil;
Krokan, Hans E.

Publication type:

Article

Enhanced translation by Nucleolin via G-rich elements in coding and non-coding regions of target mRNAs.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 19, p. 8513, doi. 10.1093/nar/gkr488

By:

Abdelmohsen, Kotb;
Tominaga, Kumiko;
Lee, Eun Kyung;
Srikantan, Subramanya;
Kang, Min-Ju;
Kim, Mihee M.;
Selimyan, Roza;
Martindale, Jennifer L.;
Yang, Xiaoling;
Carrier, France;
Zhan, Ming;
Becker, Kevin G.;
Gorospe, Myriam

Publication type:

Article

Key features of the two-intron Saccharomyces cerevisiae gene SUS1 contribute to its alternative splicing.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 19, p. 8612, doi. 10.1093/nar/gkr497

By:

Hossain, Munshi Azad;
Rodriguez, Caitlin M.;
Johnson, Tracy L.

Publication type:

Article

The USP7/Dnmt1 complex stimulates the DNA methylation activity of Dnmt1 and regulates the stability of UHRF1.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 19, p. 8355, doi. 10.1093/nar/gkr528

By:

Felle, Max;
Joppien, Saskia;
Németh, Attila;
Diermeier, Sarah;
Thalhammer, Verena;
Dobner, Thomas;
Kremmer, Elisabeth;
Kappler, Roland;
Längst, Gernot

Publication type:

Article

Synthetic RNA modules for fine-tuning gene expression levels in yeast by modulating RNase III activity.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 19, p. 8651, doi. 10.1093/nar/gkr445

By:

Babiskin, Andrew H.;
Smolke, Christina D.

Publication type:

Article

Role of the closing base pair for d(GCA) hairpin stability: free energy analysis and folding simulations.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 19, p. 8271, doi. 10.1093/nar/gkr541

By:

Kannan, Srinivasaraghavan;
Zacharias, Martin

Publication type:

Article

Classification of pseudo pairs between nucleotide bases and amino acids by analysis of nucleotide–protein complexes.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 19, p. 8628, doi. 10.1093/nar/gkr452

By:

Kondo, Jiro;
Westhof, Eric

Publication type:

Article

Engineering a portable riboswitch-LacP hybrid device for two-way gene regulation.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 19, p. e131, doi. 10.1093/nar/gkr609

By:

Jin, Ye;
Huang, Jian-Dong

Publication type:

Article

Hyperexpansion of GAA repeats affects post-initiation steps of FXN transcription in Friedreich’s ataxia.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 19, p. 8366, doi. 10.1093/nar/gkr542

By:

Kim, Eunah;
Napierala, Marek;
Dent, Sharon Y. R.

Publication type:

Article

Computational analysis of DNA replicases in double-stranded DNA viruses: relationship with the genome size.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 19, p. 8291, doi. 10.1093/nar/gkr564

By:

Kazlauskas, Darius;
Venclovas, Česlovas

Publication type:

Article

Quantitative single cell monitoring of protein synthesis at subcellular resolution using fluorescently labeled tRNA.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 19, p. e129, doi. 10.1093/nar/gkr601

By:

Barhoom, Sima;
Kaur, Jaskiran;
Cooperman, Barry S.;
Smorodinsky, Nechama I.;
Smilansky, Zeev;
Ehrlich, Marcelo;
Elroy-Stein, Orna

Publication type:

Article

SUS1 introns are required for efficient mRNA nuclear export in yeast.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 19, p. 8599, doi. 10.1093/nar/gkr496

By:

Cuenca-Bono, Bernardo;
García-Molinero, Varinia;
Pascual-García, Pau;
Dopazo, Hernan;
Llopis, Ana;
Vilardell, Josep;
Rodríguez-Navarro, Susana

Publication type:

Article

Liganded pregnane X receptor represses the human sulfotransferase SULT1E1 promoter through disrupting its chromatin structure.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 19, p. 8392, doi. 10.1093/nar/gkr458

By:

Kodama, Susumu;
Hosseinpour, Fardin;
Goldstein, Joyce A.;
Negishi, Masahiko

Publication type:

Article

SNVer: a statistical tool for variant calling in analysis of pooled or individual next-generation sequencing data.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 19, p. e132, doi. 10.1093/nar/gkr599

By:

Wei, Zhi;
Wang, Wei;
Hu, Pingzhao;
Lyon, Gholson J.;
Hakonarson, Hakon

Publication type:

Article

Mechanisms of translational regulation by a human eIF5-mimic protein.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 19, p. 8314, doi. 10.1093/nar/gkr339

By:

Singh, Chingakham Ranjit;
Watanabe, Ryosuke;
Zhou, Donghui;
Jennings, Martin D.;
Fukao, Akira;
Lee, Bumjun;
Ikeda, Yuka;
Chiorini, John A.;
Campbell, Susan G.;
Ashe, Mark P.;
Fujiwara, Toshinobu;
Wek, Ronald C.;
Pavitt, Graham D.;
Asano, Katsura

Publication type:

Article

Subscriptions.

Published in:: Nucleic Acids Research, 2011, v. 39, n. 19, p. iii, doi. 10.1093/nar/gkr1038
Publication type:: Article

Nucleic Acids Research - Editorial Board.

Published in:: Nucleic Acids Research, 2011, v. 39, n. 19, p. ii, doi. 10.1093/nar/gkr1033
Publication type:: Article

Chk2-dependent HuR phosphorylation regulates occludin mRNA translation and epithelial barrier function.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 19, p. 8472, doi. 10.1093/nar/gkr567

By:

Yu, Ting-Xi;
Wang, Peng-Yuan;
Rao, Jaladanki N.;
Zou, Tongtong;
Liu, Lan;
Xiao, Lan;
Gorospe, Myriam;
Wang, Jian-Ying

Publication type:

Article

Functionally important structural elements of U12 snRNA.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 19, p. 8531, doi. 10.1093/nar/gkr530

By:

Sikand, Kavleen;
Shukla, Girish C.

Publication type:

Article

A novel 4E-interacting protein in Leishmania is involved in stage-specific translation pathways.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 19, p. 8404, doi. 10.1093/nar/gkr555

By:

Zinoviev, Alexandra;
Léger, Mélissa;
Wagner, Gerhard;
Shapira, Michal

Publication type:

Article

Towards computional specificity screening of DNA-binding proteins.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 19, p. 8281, doi. 10.1093/nar/gkr531

By:

Seeliger, Daniel;
Buelens, Floris P.;
Goette, Maik;
de Groot, Bert L.;
Grubmüller, Helmut

Publication type:

Article

Post-irradiation chemical processing of DNA damage generates double-strand breaks in cells already engaged in repair.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 19, p. 8416, doi. 10.1093/nar/gkr463

By:

Singh, Satyendra K.;
Wang, Minli;
Staudt, Christian;
Iliakis, George

Publication type:

Article

RNAs synthesized using photocleavable biotinylated nucleotides have dramatically improved catalytic efficiency.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 19, p. 8559, doi. 10.1093/nar/gkr464

By:

Luo, Yiling;
Eldho, Nadukkudy V.;
Sintim, Herman O.;
Dayie, T. Kwaku

Publication type:

Article

Role for hACF1 in the G2/M damage checkpoint.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 19, p. 8445

By:

Sánchez-Molina, Sara;
Mortusewicz, Oliver;
Bieber, Béatrice;
Auer, Susanne;
Eckey, Maren;
Leonhardt, Heinrich;
Friedl, Anna A.;
Becker, Peter B.

Publication type:

Article