Works matching IS 03051048 AND DT 2011 AND VI 39 AND IP 17

Results: 53

RNA degradome—its biogenesis and functions.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 17, p. 7361, doi. 10.1093/nar/gkr450

By:

Jackowiak, Paulina;
Nowacka, Martyna;
Strozycki, Pawel M.;
Figlerowicz, Marek

Publication type:

Article

ChIP-seq analysis reveals distinct H3K27me3 profiles that correlate with transcriptional activity.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 17, p. 7415, doi. 10.1093/nar/gkr416

By:

Young, Matthew D.;
Willson, Tracy A.;
Wakefield, Matthew J.;
Trounson, Evelyn;
Hilton, Douglas J.;
Blewitt, Marnie E.;
Oshlack, Alicia;
Majewski, Ian J.

Publication type:

Article

A PLAC8-containing protein from an endomycorrhizal fungus confers cadmium resistance to yeast cells by interacting with Mlh3p.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 17, p. 7548

By:

Abbà, S.;
Vallino, M.;
Daghino, S.;
Di Vietro, L.;
Borriello, R.;
Perotto, S.

Publication type:

Article

Emulsified BMVC derivative induced filtration for G-quadruplex DNA structural separation.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 17, p. e114, doi. 10.1093/nar/gkr499

By:

Tsai, Yu-Lin;
Wang, Zi-Fu;
Chen, Wei-Wen;
Chang, Ta-Chau

Publication type:

Article

Efficient gene targeting mediated by a lentiviral vector-associated meganuclease.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 17, p. 7610, doi. 10.1093/nar/gkr524

By:

Izmiryan, Araksya;
Basmaciogullari, Stéphane;
Henry, Adrien;
Paques, Frédéric;
Danos, Olivier

Publication type:

Article

Hierarchical regulation of the NikR-mediated nickel response in Helicobacter pylori.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 17, p. 7564, doi. 10.1093/nar/gkr460

By:

Muller, Cécile;
Bahlawane, Christelle;
Aubert, Sylvie;
Delay, Catherine Marie;
Schauer, Kristine;
Michaud-Soret, Isabelle;
De Reuse, Hilde

Publication type:

Article

Translation-competent 48S complex formation on HCV IRES requires the RNA-binding protein NSAP1.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 17, p. 7791, doi. 10.1093/nar/gkr509

By:

Park, Sung Mi;
Paek, Ki Young;
Hong, Ka Young;
Jang, Christopher J.;
Cho, Sungchan;
Park, Ji Hoon;
Kim, Jong Heon;
Jan, Eric;
Jang, Sung Key

Publication type:

Article

Diauxic shift-dependent relocalization of decapping activators Dhh1 and Pat1 to polysomal complexes.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 17, p. 7764, doi. 10.1093/nar/gkr474

By:

Drummond, Sheona P.;
Hildyard, John;
Firczuk, Helena;
Reamtong, Onrapak;
Li, Ning;
Kannambath, Shichina;
Claydon, Amy J.;
Beynon, Robert J.;
Eyers, Claire E.;
McCarthy, John E. G.

Publication type:

Article

Intrachromosomal tandem duplication and repeat expansion during attempts to inactivate the subtelomeric essential gene GSH1 in Leishmania.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 17, p. 7499, doi. 10.1093/nar/gkr494

By:

Mukherjee, Angana;
Langston, Lance D.;
Ouellette, Marc

Publication type:

Article

3D-Image analysis platform monitoring relocation of pluripotency genes during reprogramming.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 17, p. e113, doi. 10.1093/nar/gkr486

By:

Jost, K. Laurence;
Haase, Sebastian;
Smeets, Daniel;
Schrode, Nadine;
Schmiedel, Jörn M.;
Bertulat, Bianca;
Herzel, Hanspeter;
Cremer, Marion;
Cardoso, M. Cristina

Publication type:

Article

The human DEK oncogene regulates DNA damage response signaling and repair.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 17, p. 7465, doi. 10.1093/nar/gkr454

By:

Kavanaugh, Gina M.;
Wise-Draper, Trisha M.;
Morreale, Richard J.;
Morrison, Monique A.;
Gole, Boris;
Schwemberger, Sandy;
Tichy, Elisia D.;
Lu, Lu;
Babcock, George F.;
Wells, James M.;
Drissi, Rachid;
Bissler, John J.;
Stambrook, Peter J.;
Andreassen, Paul R.;
Wiesmüller, Lisa;
Wells, Susanne I.

Publication type:

Article

Concerted action at eight phosphodiester bonds by the BcgI restriction endonuclease.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 17, p. 7630, doi. 10.1093/nar/gkr453

By:

Marshall, Jacqueline J. T.;
Smith, Rachel M.;
Ganguly, Sumita;
Halford, Stephen E.

Publication type:

Article

A reverse transcriptase-related protein mediates phage resistance and polymerizes untemplated DNA in vitro.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 17, p. 7620, doi. 10.1093/nar/gkr397

By:

Wang, Chen;
Villion, Manuela;
Semper, Cameron;
Coros, Colin;
Moineau, Sylvain;
Zimmerly, Steven

Publication type:

Article

A novel occluded RNA recognition motif in Prp24 unwinds the U6 RNA internal stem loop.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 17, p. 7837, doi. 10.1093/nar/gkr455

By:

Martin-Tumasz, Stephen;
Richie, Ashley C.;
Clos, Lawrence J.;
Brow, David A.;
Butcher, Samuel E.

Publication type:

Article

S1 ribosomal protein and the interplay between translation and mRNA decay.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 17, p. 7702, doi. 10.1093/nar/gkr417

By:

Delvillani, Francesco;
Papiani, Giulia;
Dehò, Gianni;
Briani, Federica

Publication type:

Article

Formation of m2G6 in Methanocaldococcus jannaschii tRNA catalyzed by the novel methyltransferase Trm14.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 17, p. 7641, doi. 10.1093/nar/gkr475

By:

Menezes, Sheena;
Gaston, Kirk W.;
Krivos, Kady L.;
Apolinario, Ethel E.;
Reich, Norbert O.;
Sowers, Kevin R.;
Limbach, Patrick A.;
Perona, John J.

Publication type:

Article

Autoregulatory circuit of human rpL3 expression requires hnRNP H1, NPM and KHSRP.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 17, p. 7576, doi. 10.1093/nar/gkr461

By:

Russo, Annapina;
Catillo, Morena;
Esposito, Davide;
Briata, Paola;
Pietropaolo, Concetta;
Russo, Giulia

Publication type:

Article

Decoding the genome with an integrative analysis tool: Combinatorial CRM Decoder.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 17, p. e116, doi. 10.1093/nar/gkr516

By:

Kang, Keunsoo;
Kim, Joomyeong;
Chung, Jae Hoon;
Lee, Daeyoup

Publication type:

Article

Unique translation initiation of mRNAs-containing TISU element.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 17, p. 7598, doi. 10.1093/nar/gkr484

By:

Elfakess, Rofa;
Sinvani, Hadar;
Haimov, Ora;
Svitkin, Yuri;
Sonenberg, Nahum;
Dikstein, Rivka

Publication type:

Article

Subscriptions.

Published in:: Nucleic Acids Research, 2011, v. 39, n. 17, p. iii, doi. 10.1093/nar/gkr816
Publication type:: Article

Roles of Trm9- and ALKBH8-like proteins in the formation of modified wobble uridines in Arabidopsis tRNA.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 17, p. 7688, doi. 10.1093/nar/gkr406

By:

Leihne, Vibeke;
Kirpekar, Finn;
Vågbø, Cathrine B.;
van den Born, Erwin;
Krokan, Hans E.;
Grini, Paul E.;
Meza, Trine J.;
Falnes, Pål Ø.

Publication type:

Article

d(CGGTGGT) forms an octameric parallel G-quadruplex via stacking of unusual G(:C):G(:C):G(:C):G(:C) octads.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 17, p. 7848, doi. 10.1093/nar/gkr489

By:

Borbone, Nicola;
Amato, Jussara;
Oliviero, Giorgia;
D’Atri, Valentina;
Gabelica, Valérie;
De Pauw, Edwin;
Piccialli, Gennaro;
Mayol, Luciano

Publication type:

Article

From face to interface recognition: a differential geometric approach to distinguish DNA from RNA binding surfaces.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 17, p. 7390, doi. 10.1093/nar/gkr395

By:

Shazman, Shula;
Elber, Gershon;
Mandel-Gutfreund, Yael

Publication type:

Article

A novel fluorescence-based assay for the rapid detection and quantification of cellular deoxyribonucleoside triphosphates.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 17, p. e112, doi. 10.1093/nar/gkr350

By:

Wilson, Peter M.;
LaBonte, Melissa J.;
Russell, Jared;
Louie, Stan;
Ghobrial, Andrew A.;
Ladner, Robert D.

Publication type:

Article

Genome-wide analysis of the relationships between DNaseI HS, histone modifications and gene expression reveals distinct modes of chromatin domains.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 17, p. 7428, doi. 10.1093/nar/gkr443

By:

Shu, Wenjie;
Chen, Hebing;
Bo, Xiaochen;
Wang, Shengqi

Publication type:

Article

DNA slip-outs cause RNA polymerase II arrest in vitro: potential implications for genetic instability.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 17, p. 7444, doi. 10.1093/nar/gkr429

By:

Salinas-Rios, Viviana;
Belotserkovskii, Boris P.;
Hanawalt, Philip C.

Publication type:

Article

Targeted plasmid integration into the human genome by an engineered zinc-finger recombinase.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 17, p. 7868, doi. 10.1093/nar/gkr421

By:

Gersbach, Charles A.;
Gaj, Thomas;
Gordley, Russell M.;
Mercer, Andrew C.;
Barbas, Carlos F.

Publication type:

Article

Overlapping signals for translational regulation and packaging of influenza A virus segment 2.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 17, p. 7775, doi. 10.1093/nar/gkr487

By:

Wise, Helen M.;
Barbezange, Cyril;
Jagger, Brett W.;
Dalton, Rosa M.;
Gog, Julia R.;
Curran, Martin D.;
Taubenberger, Jeffery K.;
Anderson, Emma C.;
Digard, Paul

Publication type:

Article

Identification of a signature motif for the eIF4a3–SECIS interaction.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 17, p. 7730, doi. 10.1093/nar/gkr446

By:

Budiman, Michael E.;
Bubenik, Jodi L.;
Driscoll, Donna M.

Publication type:

Article

Single-molecule force spectroscopy of the add adenine riboswitch relates folding to regulatory mechanism.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 17, p. 7677, doi. 10.1093/nar/gkr305

By:

Neupane, Krishna;
Yu, Hao;
Foster, Daniel A. N.;
Wang, Feng;
Woodside, Michael T.

Publication type:

Article

Efficient design and assembly of custom TALEN and other TAL effector-based constructs for DNA targeting.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 17, p. 7879, doi. 10.1093/nar/gkr739

By:

Cermak, Tomas;
Doyle, Erin L.;
Christian, Michelle;
Wang, Li;
Zhang, Yong;
Schmidt, Clarice;
Baller, Joshua A.;
Somia, Nikunj V.;
Bogdanove, Adam J.;
Voytas, Daniel F.

Publication type:

Article

Predicting the functional impact of protein mutations: application to cancer genomics.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 17, p. e118, doi. 10.1093/nar/gkr407

By:

Reva, Boris;
Antipin, Yevgeniy;
Sander, Chris

Publication type:

Article

Structural basis for RNA recognition by NusB and NusE in the initiation of transcription antitermination.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 17, p. 7803, doi. 10.1093/nar/gkr418

By:

Stagno, Jason R.;
Altieri, Amanda S.;
Bubunenko, Mikhail;
Tarasov, Sergey G.;
Li, Jess;
Court, Donald L.;
Byrd, R. Andrew;
Ji, Xinhua

Publication type:

Article

A systems biology approach sheds new light on Escherichia coli acid resistance.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 17, p. 7512, doi. 10.1093/nar/gkr338

By:

Stincone, Anna;
Daudi, Nazish;
Rahman, Ayesha S.;
Antczak, Philipp;
Henderson, Ian;
Cole, Jeffrey;
Johnson, Matthew D.;
Lund, Peter;
Falciani, Francesco

Publication type:

Article

Comprehensive insights into Mycobacterium tuberculosis DevR (DosR) regulon activation switch.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 17, p. 7400, doi. 10.1093/nar/gkr375

By:

Chauhan, Santosh;
Sharma, Deepak;
Singh, Alka;
Surolia, Avadhesha;
Tyagi, Jaya Sivaswami

Publication type:

Article

An investigation of the structural requirements for ATP hydrolysis and DNA cleavage by the EcoKI Type I DNA restriction and modification enzyme.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 17, p. 7667, doi. 10.1093/nar/gkr480

By:

Roberts, Gareth A.;
Cooper, Laurie P.;
White, John H.;
Su, Tsueu-Ju;
Zipprich, Jakob T.;
Geary, Paul;
Kennedy, Cowan;
Dryden, David T. F.

Publication type:

Article

Enhancers in embryonic stem cells are enriched for transposable elements and genetic variations associated with cancers.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 17, p. 7371, doi. 10.1093/nar/gkr476

By:

Teng, Li;
Firpi, Hiram A.;
Tan, Kai

Publication type:

Article

Transfection of plant mitochondria and in organello gene integration.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 17, p. e115, doi. 10.1093/nar/gkr517

By:

Mileshina, Daria;
Koulintchenko, Milana;
Konstantinov, Yuri;
Dietrich, André

Publication type:

Article

Thrombin–aptamer recognition: a revealed ambiguity.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 17, p. 7858, doi. 10.1093/nar/gkr522

By:

Russo Krauss, Irene;
Merlino, Antonello;
Giancola, Concetta;
Randazzo, Antonio;
Mazzarella, Lelio;
Sica, Filomena

Publication type:

Article

Visualization of single mRNAs reveals temporal association of proteins with microRNA-regulated mRNA.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 17, p. 7740, doi. 10.1093/nar/gkr456

By:

Shih, Joseph D.;
Waks, Zeev;
Kedersha, Nancy;
Silver, Pamela A.

Publication type:

Article

An intuitive graphical visualization technique for the interrogation of transcriptome data.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 17, p. 7380, doi. 10.1093/nar/gkr462

By:

Bushati, Natascha;
Smith, James;
Briscoe, James;
Watkins, Christopher

Publication type:

Article

miR-122 activates hepatitis C virus translation by a specialized mechanism requiring particular RNA components.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 17, p. 7716, doi. 10.1093/nar/gkr426

By:

Roberts, Ashley P. E.;
Lewis, Andrew P.;
Jopling, Catherine L.

Publication type:

Article

Recycling of protein subunits during DNA translocation and cleavage by Type I restriction-modification enzymes.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 17, p. 7656, doi. 10.1093/nar/gkr479

By:

Simons, Michelle;
Szczelkun, Mark D.

Publication type:

Article

Centromere binding specificity in assembly of the F plasmid partition complex.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 17, p. 7477, doi. 10.1093/nar/gkr457

By:

Pillet, Flavien;
Sanchez, Aurore;
Lane, David;
Anton Leberre, Véronique;
Bouet, Jean-Yves

Publication type:

Article

The structural basis for partitioning of the XRCC1/DNA ligase III-α BRCT-mediated dimer complexes.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 17, p. 7816, doi. 10.1093/nar/gkr419

By:

Cuneo, Matthew J.;
Gabel, Scott A.;
Krahn, Joseph M.;
Ricker, Melissa A.;
London, Robert E.

Publication type:

Article

Simple and efficient synthesis of 5′ pre-adenylated DNA using thermostable RNA ligase.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 17, p. e117, doi. 10.1093/nar/gkr544

By:

Zhelkovsky, Alexander M.;
McReynolds, Larry A.

Publication type:

Article

Exploiting Oxytricha trifallax nanochromosomes to screen for non-coding RNA genes.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 17, p. 7529, doi. 10.1093/nar/gkr501

By:

Jung, Seolkyoung;
Swart, Estienne C.;
Minx, Patrick J.;
Magrini, Vincent;
Mardis, Elaine R.;
Landweber, Laura F.;
Eddy, Sean R.

Publication type:

Article

Nucleic Acids Research.

Published in:: Nucleic Acids Research, 2011, v. 39, n. 17, p. ii, doi. 10.1093/nar/gkr814
Publication type:: Article

Determinants of redox sensitivity in RsrA, a zinc-containing anti-sigma factor for regulating thiol oxidative stress response.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 17, p. 7586, doi. 10.1093/nar/gkr477

By:

Jung, Yong-Gyun;
Cho, Yoo-Bok;
Kim, Min-Sik;
Yoo, Ji-Sun;
Hong, Seok-Hyeon;
Roe, Jung-Hye

Publication type:

Article

Molecular insights into miRNA processing by Arabidopsis thaliana SERRATE.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 17, p. 7828, doi. 10.1093/nar/gkr428

By:

Machida, Satoru;
Chen, Hong-Ying;
Adam Yuan, Y.

Publication type:

Article