Works matching IS 03051048 AND DT 2011 AND VI 39 AND IP 16

Results: 50

Direct and indirect effects in the regulation of overlapping promoters.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 16, p. 6879, doi. 10.1093/nar/gkr390

By:

Bendtsen, Kristian Moss;
Erdőssy, János;
Csiszovszki, Zsolt;
Svenningsen, Sine Lo;
Sneppen, Kim;
Krishna, Sandeep;
Semsey, Szabolcs

Publication type:

Article

In vivo functional analysis of the Dicistroviridae intergenic region internal ribosome entry sites.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 16, p. 7276, doi. 10.1093/nar/gkr427

By:

Hertz, Marla I.;
Thompson, Sunnie R.

Publication type:

Article

Depurination of Brome mosaic virus RNA3 inhibits its packaging into virus particles.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 16, p. 7209, doi. 10.1093/nar/gkr383

By:

Karran, Rajita A.;
Hudak, Katalin A.

Publication type:

Article

Roles of DNA polymerase I in leading and lagging-strand replication defined by a high-resolution mutation footprint of ColE1 plasmid replication.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 16, p. 7020, doi. 10.1093/nar/gkr157

By:

Allen, Jennifer M.;
Simcha, David M.;
Ericson, Nolan G.;
Alexander, David L.;
Marquette, Jacob T.;
Van Biber, Benjamin P.;
Troll, Chris J.;
Karchin, Rachel;
Bielas, Jason H.;
Loeb, Lawrence A.;
Camps, Manel

Publication type:

Article

Design principles for bifunctional targeted oligonucleotide enhancers of splicing.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 16, p. 7194, doi. 10.1093/nar/gkr152

By:

Owen, Nicholas;
Zhou, Haiyan;
Malygin, Alexey A.;
Sangha, Jason;
Smith, Lindsay D.;
Muntoni, Francesco;
Eperon, Ian C.

Publication type:

Article

The role of Holliday junction resolvases in the repair of spontaneous and induced DNA damage.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 16, p. 7009, doi. 10.1093/nar/gkr277

By:

Agmon, Neta;
Yovel, Moran;
Harari, Yaniv;
Liefshitz, Batia;
Kupiec, Martin

Publication type:

Article

Nucleic Acids Research.

Published in:: Nucleic Acids Research, 2011, v. 39, n. 16, p. i, doi. 10.1093/nar/gkr741
Publication type:: Article

A novel screening system improves genetic correction by internal exon replacement.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 16, p. e108, doi. 10.1093/nar/gkr465

By:

Koller, Ulrich;
Wally, Verena;
Mitchell, Lloyd G.;
Klausegger, Alfred;
Murauer, Eva M.;
Mayr, Elisabeth;
Gruber, Christina;
Hainzl, Stefan;
Hintner, Helmut;
Bauer, Johann W.

Publication type:

Article

Compensatory signals associated with the activation of human GC 5′ splice sites.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 16, p. 7077, doi. 10.1093/nar/gkr306

By:

Kralovicova, Jana;
Hwang, Gyulin;
Asplund, A. Charlotta;
Churbanov, Alexander;
Smith, C. I. Edvard;
Vorechovsky, Igor

Publication type:

Article

Genome-wide analysis of mobile genetic element insertion sites.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 16, p. 6864, doi. 10.1093/nar/gkr337

By:

Rawal, Kamal;
Ramaswamy, Ram

Publication type:

Article

A multifunctional bioconjugate module for versatile photoaffinity labeling and click chemistry of RNA.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 16, p. 7348, doi. 10.1093/nar/gkr449

By:

Kellner, Stefanie;
Seidu-Larry, Salifu;
Burhenne, Jürgen;
Motorin, Yuri;
Helm, Mark

Publication type:

Article

Identification and characterization of a novel ubiquitous nucleolar protein ‘NARR’ encoded by a gene overlapping the rab34 oncogene.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 16, p. 7103, doi. 10.1093/nar/gkr273

By:

Zougman, Alexandre;
Mann, Matthias;
Wiśniewski, Jacek R.

Publication type:

Article

Base pair opening kinetics study of the aegPNA:DNA hydrid duplex containing a site-specific GNA-like chiral PNA monomer.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 16, p. 7329, doi. 10.1093/nar/gkr360

By:

Seo, Yeo-Jin;
Lim, Jisoo;
Lee, Eun-Hae;
Ok, Taedong;
Yoon, Juyoung;
Lee, Joon-Hwa;
Lee, Hee-Seung

Publication type:

Article

Modified bases enable high-efficiency oligonucleotide-mediated allelic replacement via mismatch repair evasion.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 16, p. 7336, doi. 10.1093/nar/gkr183

By:

Wang, Harris H.;
Xu, George;
Vonner, Ashley J.;
Church, George

Publication type:

Article

Signatures of DNA flexibility, interactions and sequence-related structural variations in classical X-ray diffraction patterns.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 16, p. 7289, doi. 10.1093/nar/gkr260

By:

Kornyshev, A. A.;
Lee, D. J.;
Wynveen, A.;
Leikin, S.

Publication type:

Article

PROMoter uPstream Transcripts share characteristics with mRNAs and are produced upstream of all three major types of mammalian promoters.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 16, p. 7179, doi. 10.1093/nar/gkr370

By:

Preker, Pascal;
Almvig, Kristina;
Christensen, Marianne S.;
Valen, Eivind;
Mapendano, Christophe K.;
Sandelin, Albin;
Jensen, Torben Heick

Publication type:

Article

Rational, modular adaptation of enzyme-free DNA circuits to multiple detection methods.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 16, p. e110, doi. 10.1093/nar/gkr504

By:

Li, Bingling;
Ellington, Andrew D.;
Chen, Xi

Publication type:

Article

Experimental strategies for microRNA target identification.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 16, p. 6845, doi. 10.1093/nar/gkr330

By:

Thomson, Daniel W.;
Bracken, Cameron P.;
Goodall, Gregory J.

Publication type:

Article

Subscriptions.

Published in:: Nucleic Acids Research, 2011, v. 39, n. 16, p. iii, doi. 10.1093/nar/gkr743
Publication type:: Article

Nucleosomes protect DNA from DNA methylation in vivo and in vitro.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 16, p. 6956, doi. 10.1093/nar/gkr263

By:

Felle, Max;
Hoffmeister, Helen;
Rothammer, Julia;
Fuchs, Andreas;
Exler, Josef H.;
Längst, Gernot

Publication type:

Article

Efficient recombinase-mediated cassette exchange at the AAVS1 locus in human embryonic stem cells using baculoviral vectors.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 16, p. e107, doi. 10.1093/nar/gkr409

By:

Ramachandra, Chrishan J. A.;
Shahbazi, Mohammad;
Kwang, Timothy W. X.;
Choudhury, Yukti;
Bak, Xiao Ying;
Yang, Jing;
Wang, Shu

Publication type:

Article

Reciprocal roles of DBC1 and SIRT1 in regulating estrogen receptor α activity and co-activator synergy.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 16, p. 6932, doi. 10.1093/nar/gkr347

By:

Ji Yu, Eun;
Kim, Seok-Hyung;
Heo, Kyu;
Ou, Chen-Yin;
Stallcup, Michael R.;
Kim, Jeong Hoon

Publication type:

Article

UV stalled replication forks restart by re-priming in human fibroblasts.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 16, p. 7049, doi. 10.1093/nar/gkr420

By:

Elvers, Ingegerd;
Johansson, Fredrik;
Groth, Petra;
Erixon, Klaus;
Helleday, Thomas

Publication type:

Article

Avoiding cytotoxicity of transposases by dose-controlled mRNA delivery.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 16, p. 7147, doi. 10.1093/nar/gkr384

By:

Galla, Melanie;
Schambach, Axel;
Falk, Christine S.;
Maetzig, Tobias;
Kuehle, Johannes;
Lange, Kathrin;
Zychlinski, Daniela;
Heinz, Niels;
Brugman, Martijn H.;
Göhring, Gudrun;
Izsvák, Zsuzsanna;
Ivics, Zoltán;
Baum, Christopher

Publication type:

Article

Phosphorylation of Mcm2 modulates Mcm2–7 activity and affects the cell’s response to DNA damage.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 16, p. 6998, doi. 10.1093/nar/gkr371

By:

Stead, Brent E.;
Brandl, Christopher J.;
Davey, Megan J.

Publication type:

Article

Inferring causative variants in microRNA target sites.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 16, p. e109, doi. 10.1093/nar/gkr414

By:

Thomas, Laurent F.;
Saito, Takaya;
Sætrom, Pål

Publication type:

Article

G4 Resolvase 1 tightly binds and unwinds unimolecular G4-DNA.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 16, p. 7161, doi. 10.1093/nar/gkr234

By:

Giri, Banabihari;
Smaldino, Philip J.;
Thys, Ryan G.;
Creacy, Steven D.;
Routh, Eric D.;
Hantgan, Roy R.;
Lattmann, Simon;
Nagamine, Yoshikuni;
Akman, Steven A.;
Vaughn, James P.

Publication type:

Article

Adenine and guanine recognition of stop codon is mediated by different N domain conformations of translation termination factor eRF1.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 16, p. 7134, doi. 10.1093/nar/gkr376

By:

Bulygin, Konstantin N.;
Khairulina, Yulia S.;
Kolosov, Petr M.;
Ven’yaminova, Aliya G.;
Graifer, Dmitri M.;
Vorobjev, Yuri N.;
Frolova, Ludmila Yu.;
Karpova, Galina G.

Publication type:

Article

Characterization of extracellular circulating microRNA.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 16, p. 7223, doi. 10.1093/nar/gkr254

By:

Turchinovich, Andrey;
Weiz, Ludmila;
Langheinz, Anne;
Burwinkel, Barbara

Publication type:

Article

Structures of apo IRF-3 and IRF-7 DNA binding domains: effect of loop L1 on DNA binding.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 16, p. 7300, doi. 10.1093/nar/gkr325

By:

De Ioannes, Pablo;
Escalante, Carlos R.;
Aggarwal, Aneel K.

Publication type:

Article

Analysis of genomic variation in non-coding elements using population-scale sequencing data from the 1000 Genomes Project.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 16, p. 7058, doi. 10.1093/nar/gkr342

By:

Mu, Xinmeng Jasmine;
Lu, Zhi John;
Kong, Yong;
Lam, Hugo Y. K.;
Gerstein, Mark B.

Publication type:

Article

Crystal structures of CGG RNA repeats with implications for fragile X-associated tremor ataxia syndrome.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 16, p. 7308, doi. 10.1093/nar/gkr368

By:

Kiliszek, Agnieszka;
Kierzek, Ryszard;
Krzyzosiak, Wlodzimierz J.;
Rypniewski, Wojciech

Publication type:

Article

BlastR—fast and accurate database searches for non-coding RNAs.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 16, p. 6886, doi. 10.1093/nar/gkr335

By:

Bussotti, Giovanni;
Raineri, Emanuele;
Erb, Ionas;
Zytnicki, Matthias;
Wilm, Andreas;
Beaudoing, Emmanuel;
Bucher, Philipp;
Notredame, Cedric

Publication type:

Article

EBP1 and DRBP76/NF90 binding proteins are included in the major histocompatibility complex class II RNA operon.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 16, p. 7263, doi. 10.1093/nar/gkr278

By:

Corso, Carmela;
Pisapia, Laura;
Citro, Alessandra;
Cicatiello, Valeria;
Barba, Pasquale;
Cigliano, Luisa;
Abrescia, Paolo;
Maffei, Antonella;
Manco, Giuseppe;
Del Pozzo, Giovanna

Publication type:

Article

Identification of a DNA-binding site for the transcription factor Haa1, required for Saccharomyces cerevisiae response to acetic acid stress.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 16, p. 6896, doi. 10.1093/nar/gkr228

By:

Mira, Nuno P.;
Henriques, Sílvia F.;
Keller, Greg;
Teixeira, Miguel C.;
Matos, Rute G.;
Arraiano, Cecília M.;
Winge, Dennis R.;
Sá-Correia, Isabel

Publication type:

Article

The in vitro loose dimer structure and rearrangements of the HIV-2 leader RNA.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 16, p. 7234, doi. 10.1093/nar/gkr385

By:

Purzycka, Katarzyna J.;
Pachulska-Wieczorek, Katarzyna;
Adamiak, Ryszard W.

Publication type:

Article

Conservation of transcription factor binding events predicts gene expression across species.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 16, p. 7092, doi. 10.1093/nar/gkr404

By:

Hemberg, Martin;
Kreiman, Gabriel

Publication type:

Article

The distinctive roles of erythroid specific activator GATA-1 and NF-E2 in transcription of the human fetal γ-globin genes.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 16, p. 6944, doi. 10.1093/nar/gkr253

By:

Woon Kim, Yea;
Kim, Seoyeon;
Geun Kim, Chul;
Kim, AeRi

Publication type:

Article

Gene amplification system based on double rolling-circle replication as a model for oncogene-type amplification.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 16, p. e106, doi. 10.1093/nar/gkr442

By:

Watanabe, Takaaki;
Tanabe, Hideyuki;
Horiuchi, Takashi

Publication type:

Article

Replication enhancer elements within the open reading frame of tick-borne encephalitis virus and their evolution within the Flavivirus genus.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 16, p. 7034, doi. 10.1093/nar/gkr237

By:

Tuplin, A.;
Evans, D. J.;
Buckley, A.;
Jones, I. M.;
Gould, E. A.;
Gritsun, T. S.

Publication type:

Article

Quadruplex formation is necessary for stable PNA invasion into duplex DNA of BCL2 promoter region.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 16, p. 7114, doi. 10.1093/nar/gkr259

By:

Onyshchenko, Mykola I.;
Gaynutdinov, Timur I.;
Englund, Ethan A.;
Appella, Daniel H.;
Neumann, Ronald D.;
Panyutin, Igor G.

Publication type:

Article

Cross-linking of DNA through HMGA1 suggests a DNA scaffold.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 16, p. 7124, doi. 10.1093/nar/gkr396

By:

Vogel, Benjamin;
Löschberger, Anna;
Sauer, Markus;
Hock, Robert

Publication type:

Article

Functional conservation in human and Drosophila of Metazoan ADAR2 involved in RNA editing: loss of ADAR1 in insects.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 16, p. 7249, doi. 10.1093/nar/gkr423

By:

Keegan, Liam P.;
McGurk, Leeane;
Palavicini, Juan Pablo;
Brindle, James;
Paro, Simona;
Li, Xianghua;
Rosenthal, Joshua J. C.;
O'Connell, Mary A.

Publication type:

Article

Control of gene expression by modulated self-assembly.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 16, p. 6854, doi. 10.1093/nar/gkr272

By:

Vilar, Jose M. G.;
Saiz, Leonor

Publication type:

Article

The biological and structural characterization of Mycobacterium tuberculosis UvrA provides novel insights into its mechanism of action.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 16, p. 7316, doi. 10.1093/nar/gkr271

By:

Rossi, Franca;
Khanduja, Jasbeer Singh;
Bortoluzzi, Alessio;
Houghton, Joanna;
Sander, Peter;
Güthlein, Carolin;
Davis, Elaine O.;
Springer, Burkhard;
Böttger, Erik C.;
Relini, Annalisa;
Penco, Amanda;
Muniyappa, K.;
Rizzi, Menico

Publication type:

Article

Endogenously induced DNA double strand breaks arise in heterochromatic DNA regions and require ataxia telangiectasia mutated and Artemis for their repair.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 16, p. 6986, doi. 10.1093/nar/gkr331

By:

Woodbine, Lisa;
Brunton, H.;
Goodarzi, A. A.;
Shibata, A.;
Jeggo, P. A.

Publication type:

Article

Genome-wide evidence for local DNA methylation spreading from small RNA-targeted sequences in Arabidopsis.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 16, p. 6919, doi. 10.1093/nar/gkr324

By:

Ahmed, Ikhlak;
Sarazin, Alexis;
Bowler, Chris;
Colot, Vincent;
Quesneville, Hadi

Publication type:

Article

Differentially regulated splice variants and systems biology analysis of Kaposi's sarcoma-associated herpesvirus-infected lymphatic endothelial cells.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 16, p. 6970, doi. 10.1093/nar/gkr405

By:

Chang, Ting-Yu;
Wu, Yu-Hsuan;
Cheng, Cheng-Chung;
Wang, Hsei-Wei

Publication type:

Article

Cis-regulation of microRNA expression by scaffold/matrix-attachment regions.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 16, p. 6908, doi. 10.1093/nar/gkr303

By:

Chavali, Pavithra Lakshminarasimhan;
Funa, Keiko;
Chavali, Sreenivas

Publication type:

Article

Prediction of leucine-rich nuclear export signal containing proteins with NESsential.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 16, p. e111, doi. 10.1093/nar/gkr493

By:

Fu, Szu-Chin;
Imai, Kenichiro;
Horton, Paul

Publication type:

Article