Works matching IS 03051048 AND DT 2011 AND VI 39 AND IP 15

Results: 54

Comparing binding site information to binding affinity reveals that Crp/DNA complexes have several distinct binding conformers.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 15, p. 6813, doi. 10.1093/nar/gkr369

By:

Holmquist, Peter C.;
Holmquist, Gerald P.;
Summers, Michael L.

Publication type:

Article

Structure and dynamics of the deoxyguanosine-sensing riboswitch studied by NMR-spectroscopy.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 15, p. 6802, doi. 10.1093/nar/gkr238

By:

Wacker, Anna;
Buck, Janina;
Mathieu, Daniel;
Richter, Christian;
Wöhnert, Jens;
Schwalbe, Harald

Publication type:

Article

Structural basis of SETD6-mediated regulation of the NF-kB network via methyl-lysine signaling.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 15, p. 6380, doi. 10.1093/nar/gkr256

By:

Chang, Yanqi;
Levy, Dan;
Horton, John R.;
Peng, Junmin;
Zhang, Xing;
Gozani, Or;
Cheng, Xiaodong

Publication type:

Article

msl2 mRNA is bound by free nuclear MSL complex in Drosophila melanogaster.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 15, p. 6428, doi. 10.1093/nar/gkr236

By:

Johansson, Anna-Mia;
Allgardsson, Anders;
Stenberg, Per;
Larsson, Jan

Publication type:

Article

Structural basis of cooperative DNA recognition by the plasmid conjugation factor, TraM.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 15, p. 6775, doi. 10.1093/nar/gkr296

By:

Wong, Joyce J. W.;
Lu, Jun;
Edwards, Ross A.;
Frost, Laura S.;
Glover, J. N. Mark

Publication type:

Article

The PurR regulon in Escherichia coli K-12 MG1655.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 15, p. 6456, doi. 10.1093/nar/gkr307

By:

Cho, Byung-Kwan;
Federowicz, Stephen A.;
Embree, Mallory;
Park, Young-Seoub;
Kim, Donghyuk;
Palsson, Bernhard Ø.

Publication type:

Article

High-level transgene expression by homologous recombination-mediated gene transfer.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 15, p. e104, doi. 10.1093/nar/gkr436

By:

Grandjean, Mélanie;
Girod, Pierre-Alain;
Calabrese, David;
Kostyrko, Kaja;
Wicht, Marianne;
Yerly, Florence;
Mazza, Christian;
Beckmann, Jacques S.;
Martinet, Danielle;
Mermod, Nicolas

Publication type:

Article

Stimulation of stop codon readthrough: frequent presence of an extended 3′ RNA structural element.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 15, p. 6679, doi. 10.1093/nar/gkr224

By:

Firth, Andrew E.;
Wills, Norma M.;
Gesteland, Raymond F.;
Atkins, John F.

Publication type:

Article

MicroRNA-192 targeting retinoblastoma 1 inhibits cell proliferation and induces cell apoptosis in lung cancer cells.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 15, p. 6669, doi. 10.1093/nar/gkr232

By:

Feng, Shipeng;
Cong, Shujie;
Zhang, Xin;
Bao, Xichen;
Wang, Wei;
Li, Huiping;
Wang, Zhe;
Wang, Guoxin;
Xu, Jianzhen;
Du, Bowen;
Qu, Dezhong;
Xiong, Wei;
Yin, Menghui;
Ren, Xiaoshuai;
Wang, Feifei;
He, Jianxing;
Zhang, Biliang

Publication type:

Article

Steric exclusion and wrapping of the excluded DNA strand occurs along discrete external binding paths during MCM helicase unwinding.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 15, p. 6585, doi. 10.1093/nar/gkr345

By:

Graham, Brian W.;
Schauer, Grant D.;
Leuba, Sanford H.;
Trakselis, Michael A.

Publication type:

Article

An RNA aptamer perturbs heat shock transcription factor activity in Drosophila melanogaster.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 15, p. 6729, doi. 10.1093/nar/gkr206

By:

Salamanca, H. Hans;
Fuda, Nicholas;
Shi, Hua;
Lis, John T.

Publication type:

Article

Interconversion between bound and free conformations of LexA orchestrates the bacterial SOS response.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 15, p. 6546, doi. 10.1093/nar/gkr265

By:

Butala, Matej;
Klose, Daniel;
Hodnik, Vesna;
Rems, Ana;
Podlesek, Zdravko;
Klare, Johann P.;
Anderluh, Gregor;
Busby, Stephen J. W.;
Steinhoff, Heinz-Jürgen;
Žgur-Bertok, Darja

Publication type:

Article

Computational identification of insertional mutagenesis targets for cancer gene discovery.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 15, p. e105, doi. 10.1093/nar/gkr447

By:

de Jong, Johann;
de Ridder, Jeroen;
van der Weyden, Louise;
Sun, Ning;
van Uitert, Miranda;
Berns, Anton;
van Lohuizen, Maarten;
Jonkers, Jos;
Adams, David J.;
Wessels, Lodewyk F. A.

Publication type:

Article

NF-kappaB P50/P65 hetero-dimer mediates differential regulation of CD166/ALCAM expression via interaction with micoRNA-9 after serum deprivation, providing evidence for a novel negative auto-regulatory loop.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 15, p. 6440, doi. 10.1093/nar/gkr302

By:

Wang, Jiayi;
Gu, Zhidong;
Ni, Peihua;
Qiao, Yongxia;
Chen, Changqiang;
Liu, Xiangfan;
Lin, Jiafei;
Chen, Ning;
Fan, Qishi

Publication type:

Article

The adenovirus E4orf4 protein targets PP2A to the ACF chromatin-remodeling factor and induces cell death through regulation of SNF2h-containing complexes.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 15, p. 6414, doi. 10.1093/nar/gkr231

By:

Brestovitsky, Anna;
Sharf, Rakefet;
Mittelman, Karin;
Kleinberger, Tamar

Publication type:

Article

Inferring transcription factor complexes from ChIP-seq data.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 15, p. e98, doi. 10.1093/nar/gkr341

By:

Whitington, Tom;
Frith, Martin C.;
Johnson, James;
Bailey, Timothy L.

Publication type:

Article

Homogeneous antibody-based proximity extension assays provide sensitive and specific detection of low-abundant proteins in human blood.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 15, p. e102, doi. 10.1093/nar/gkr424

By:

Lundberg, Martin;
Eriksson, Anna;
Tran, Bonnie;
Assarsson, Erika;
Fredriksson, Simon

Publication type:

Article

Effect of the BRCA2 CTRD domain on RAD51 filaments analyzed by an ensemble of single molecule techniques.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 15, p. 6558, doi. 10.1093/nar/gkr295

By:

Holthausen, J. T.;
van Loenhout, M. T. J.;
Sanchez, H.;
Ristic, D.;
van Rossum-Fikkert, S. E.;
Modesti, M.;
Dekker, C.;
Kanaar, R.;
Wyman, C.

Publication type:

Article

Dynamic modification of the ETS transcription factor PEA3 by sumoylation and p300-mediated acetylation.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 15, p. 6403, doi. 10.1093/nar/gkr267

By:

Guo, Baoqiang;
Panagiotaki, Niki;
Warwood, Stacey;
Sharrocks, Andrew D.

Publication type:

Article

Highly fluorescent guanosine mimics for folding and energy transfer studies.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 15, p. 6825, doi. 10.1093/nar/gkr281

By:

Dumas, Anaëlle;
Luedtke, Nathan W.

Publication type:

Article

Stabilization of unstable CGC+ triplex DNA by single-walled carbon nanotubes under physiological conditions.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 15, p. 6835, doi. 10.1093/nar/gkr322

By:

Song, Yujun;
Feng, Lingyan;
Ren, Jinsong;
Qu, Xiaogang

Publication type:

Article

Unraveling networks of co-regulated genes on the sole basis of genome sequences.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 15, p. 6340

By:

Brohée, Sylvain;
Janky, Rekin’s;
Abdel-Sater, Fadi;
Vanderstocken, Gilles;
André, Bruno;
van Helden, Jacques

Publication type:

Article

Gcn5 facilitates Pol II progression, rather than recruitment to nucleosome-depleted stress promoters, in Schizosaccharomyces pombe.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 15, p. 6369, doi. 10.1093/nar/gkr255

By:

Sansó, Miriam;
Vargas-Pérez, Itzel;
Quintales, Luis;
Antequera, Francisco;
Ayté, José;
Hidalgo, Elena

Publication type:

Article

A novel bioinformatics pipeline for identification and characterization of fusion transcripts in breast cancer and normal cell lines.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 15, p. e100, doi. 10.1093/nar/gkr362

By:

Asmann, Yan W.;
Hossain, Asif;
Necela, Brian M.;
Middha, Sumit;
Kalari, Krishna R.;
Sun, Zhifu;
Chai, High-Seng;
Williamson, David W.;
Radisky, Derek;
Schroth, Gary P.;
Kocher, Jean-Pierre A.;
Perez, Edith A.;
Thompson, E. Aubrey

Publication type:

Article

The DNA-recognition fold of Sso7c4 suggests a new member of SpoVT-AbrB superfamily from archaea.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 15, p. 6764, doi. 10.1093/nar/gkr283

By:

Hsu, Chun-Hua;
Wang, Andrew H.-J.

Publication type:

Article

Genetically tagged TRE5-A retrotransposons reveal high amplification rates and authentic target site preference in the Dictyostelium discoideum genome.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 15, p. 6608, doi. 10.1093/nar/gkr261

By:

Siol, Oliver;
Spaller, Thomas;
Schiefner, Jana;
Winckler, Thomas

Publication type:

Article

Dimer formation and conformational flexibility ensure cytoplasmic stability and nuclear accumulation of Elk-1.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 15, p. 6390, doi. 10.1093/nar/gkr266

By:

Evans, Emma L.;
Saxton, Janice;
Shelton, Samuel J.;
Begitt, Andreas;
Holliday, Nicholas D.;
Hipskind, Robert A.;
Shaw, Peter E.

Publication type:

Article

Systematic bias in high-throughput sequencing data and its correction by BEADS.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 15, p. e103, doi. 10.1093/nar/gkr425

By:

Cheung, Ming-Sin;
Down, Thomas A.;
Latorre, Isabel;
Ahringer, Julie

Publication type:

Article

The role of tRNA and ribosome competition in coupling the expression of different mRNAs in Saccharomyces cerevisiae.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 15, p. 6705, doi. 10.1093/nar/gkr300

By:

Chu, Dominique;
Barnes, David J.;
von der Haar, Tobias

Publication type:

Article

Nucleic Acids Research.

Published in:: Nucleic Acids Research, 2011, v. 39, n. 15, p. i, doi. 10.1093/nar/gkr708
Publication type:: Article

Specific implications of the HIV-1 nucleocapsid zinc fingers in the annealing of the primer binding site complementary sequences during the obligatory plus strand transfer.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 15, p. 6633, doi. 10.1093/nar/gkr274

By:

Godet, Julien;
Ramalanjaona, Nick;
Sharma, Kamal K.;
Richert, Ludovic;
de Rocquigny, Hugues;
Darlix, Jean-Luc;
Duportail, Guy;
Mély, Yves

Publication type:

Article

Hybridization kinetics between immobilized double-stranded DNA probes and targets containing embedded recognition segments.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 15, p. e99, doi. 10.1093/nar/gkr293

By:

Baker, Bryan A.;
Milam, Valeria T.

Publication type:

Article

Widespread expression of piRNA-like molecules in somatic tissues.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 15, p. 6596, doi. 10.1093/nar/gkr298

By:

Yan, Zheng;
Hu, Hai Yang;
Jiang, Xi;
Maierhofer, Vera;
Neb, Elena;
He, Liu;
Hu, Yuhui;
Hu, Hao;
Li, Na;
Chen, Wei;
Khaitovich, Philipp

Publication type:

Article

Tracking epigenetic histone modifications in single cells using Fab-based live endogenous modification labeling.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 15, p. 6475, doi. 10.1093/nar/gkr343

By:

Hayashi-Takanaka, Yoko;
Yamagata, Kazuo;
Wakayama, Teruhiko;
Stasevich, Timothy J.;
Kainuma, Takashi;
Tsurimoto, Toshiki;
Tachibana, Makoto;
Shinkai, Yoichi;
Kurumizaka, Hitoshi;
Nozaki, Naohito;
Kimura, Hiroshi

Publication type:

Article

DNA double-strand breaks in heterochromatin elicit fast repair protein recruitment, histone H2AX phosphorylation and relocation to euchromatin.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 15, p. 6489, doi. 10.1093/nar/gkr230

By:

Jakob, Burkhard;
Splinter, Jörn;
Conrad, Sandro;
Voss, Kay-Obbe;
Zink, Daniele;
Durante, Marco;
Löbrich, Markus;
Taucher-Scholz, Gisela

Publication type:

Article

Solution structure and dynamic analysis of chicken MBD2 methyl binding domain bound to a target-methylated DNA sequence.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 15, p. 6741, doi. 10.1093/nar/gkr262

By:

Scarsdale, J. Neel;
Webb, Heather D.;
Ginder, Gordon D.;
Williams, David C.

Publication type:

Article

PSAR: measuring multiple sequence alignment reliability by probabilistic sampling.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 15, p. 6359, doi. 10.1093/nar/gkr334

By:

Kim, Jaebum;
Ma, Jian

Publication type:

Article

Composition of yeast snRNPs and snoRNPs in the absence of trimethylguanosine caps reveals nuclear cap binding protein as a gained U1 component implicated in the cold-sensitivity of tgs1Δ cells.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 15, p. 6715, doi. 10.1093/nar/gkr279

By:

Schwer, Beate;
Erdjument-Bromage, Hediye;
Shuman, Stewart

Publication type:

Article

H-NS mediates the dissociation of a refractory protein–DNA complex during Tn10/IS10 transposition.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 15, p. 6660, doi. 10.1093/nar/gkr309

By:

Liu, Danxu;
Haniford, David B.;
Chalmers, Ronald M.

Publication type:

Article

Native homing endonucleases can target conserved genes in humans and in animal models.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 15, p. 6646, doi. 10.1093/nar/gkr242

By:

Barzel, Adi;
Privman, Eyal;
Peeri, Michael;
Naor, Adit;
Shachar, Einat;
Burstein, David;
Lazary, Rona;
Gophna, Uri;
Pupko, Tal;
Kupiec, Martin

Publication type:

Article

Characterization of DNA with an 8-oxoguanine modification.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 15, p. 6789, doi. 10.1093/nar/gkr275

By:

Singh, Sreelekha K.;
Szulik, Marta W.;
Ganguly, Manjori;
Khutsishvili, Irine;
Stone, Michael P.;
Marky, Luis A.;
Gold, Barry

Publication type:

Article

Mechanism of Exonuclease I stimulation by the single-stranded DNA-binding protein.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 15, p. 6536, doi. 10.1093/nar/gkr315

By:

Lu, Duo;
Myers, Angela R.;
George, Nicholas P.;
Keck, James L.

Publication type:

Article

High-resolution analysis of four efficient yeast replication origins reveals new insights into the ORC and putative MCM binding elements.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 15, p. 6523, doi. 10.1093/nar/gkr301

By:

Chang, FuJung;
May, Caitlin D.;
Hoggard, Timothy;
Miller, Jeremy;
Fox, Catherine A.;
Weinreich, Michael

Publication type:

Article

Coordinated regulation of mitochondrial topoisomerase IB with mitochondrial nuclear encoded genes and MYC.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 15, p. 6620, doi. 10.1093/nar/gkr208

By:

Zoppoli, Gabriele;
Douarre, Céline;
Dalla Rosa, Ilaria;
Liu, Hongfang;
Reinhold, William;
Pommier, Yves

Publication type:

Article

Analyses of the yeast Rad51 recombinase A265V mutant reveal different in vivo roles of Swi2-like factors.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 15, p. 6511, doi. 10.1093/nar/gkr297

By:

Chi, Peter;
Kwon, YoungHo;
Visnapuu, Mari-Liis;
Lam, Isabel;
Santa Maria, Sergio R.;
Zheng, Xiuzhong;
Epshtein, Anastasiya;
Greene, Eric C.;
Sung, Patrick;
Klein, Hannah L.

Publication type:

Article

Phosphorylation of histone H3(T118) alters nucleosome dynamics and remodeling.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 15, p. 6465, doi. 10.1093/nar/gkr304

By:

North, Justin A.;
Javaid, Sarah;
Ferdinand, Michelle B.;
Chatterjee, Nilanjana;
Picking, Jonathan W.;
Shoffner, Matthew;
Nakkula, Robin J.;
Bartholomew, Blaine;
Ottesen, Jennifer J.;
Fishel, Richard;
Poirier, Michael G.

Publication type:

Article

Subscriptions.

Published in:: Nucleic Acids Research, 2011, v. 39, n. 15, p. iii, doi. 10.1093/nar/gkr710
Publication type:: Article

An alternative approach to multiple genome comparison.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 15, p. e101, doi. 10.1093/nar/gkr177

By:

Mancheron, Alban;
Uricaru, Raluca;
Rivals, Eric

Publication type:

Article

The ancestral role of ATP hydrolysis in type II topoisomerases: prevention of DNA double-strand breaks.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 15, p. 6327, doi. 10.1093/nar/gkr258

By:

Bates, Andrew D.;
Berger, James M.;
Maxwell, Anthony

Publication type:

Article

Nucleolin binds to a subset of selenoprotein mRNAs and regulates their expression.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 15, p. 6844, doi. 10.1093/nar/gkr657

By:

Miniard, Angela C.;
Middleton, Lisa M.;
Budiman, Michael E.;
Gerber, Carri A.;
Driscoll, Donna M.

Publication type:

Article