Works matching IS 03051048 AND DT 2011 AND VI 39 AND IP 14

Results: 52

Mechanism of activation of methyltransferases involved in translation by the Trm112 ‘hub’ protein.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 14, p. 6249, doi. 10.1093/nar/gkr176

By:

Liger, Dominique;
Mora, Liliana;
Lazar, Noureddine;
Figaro, Sabine;
Henri, Julien;
Scrima, Nathalie;
Buckingham, Richard H.;
van Tilbeurgh, Herman;
Heurgué-Hamard, Valérie;
Graille, Marc

Publication type:

Article

Differential usage of transcriptional start sites and polyadenylation sites in FMR1 premutation alleles†.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 14, p. 6172, doi. 10.1093/nar/gkr100

By:

Tassone, Flora;
De Rubeis, Silvia;
Carosi, Chiara;
La Fata, Giorgio;
Serpa, Gisele;
Raske, Christopher;
Willemsen, Rob;
Hagerman, Paul J.;
Bagni, Claudia

Publication type:

Article

ESPRIT-Tree: hierarchical clustering analysis of millions of 16S rRNA pyrosequences in quasilinear computational time.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 14, p. e95, doi. 10.1093/nar/gkr349

By:

Cai, Yunpeng;
Sun, Yijun

Publication type:

Article

In silico characterization and prediction of global protein–mRNA interactions in yeast.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 14, p. 5826, doi. 10.1093/nar/gkr160

By:

Pancaldi, Vera;
Bähler, Jürg

Publication type:

Article

Additional roles of a peripheral loop–loop interaction in the Neurospora VS ribozyme.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 14, p. 6223, doi. 10.1093/nar/gkr250

By:

DeAbreu, Diane M.;
Olive, Joan E.;
Collins, Richard A.

Publication type:

Article

Mediator head subcomplex Med11/22 contains a common helix bundle building block with a specific function in transcription initiation complex stabilization.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 14, p. 6291, doi. 10.1093/nar/gkr229

By:

Seizl, Martin;
Larivière, Laurent;
Pfaffeneder, Toni;
Wenzeck, Larissa;
Cramer, Patrick

Publication type:

Article

High-throughput analysis of the mutagenic and cytotoxic properties of DNA lesions by next-generation sequencing.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 14, p. 5945, doi. 10.1093/nar/gkr159

By:

Yuan, Bifeng;
Wang, Jianshuang;
Cao, Huachuan;
Sun, Ruobai;
Wang, Yinsheng

Publication type:

Article

Context dependence between subdomains in the DNA binding interface of the I-CreI homing endonuclease.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 14, p. 6124, doi. 10.1093/nar/gkr186

By:

Grizot, Sylvestre;
Duclert, Aymeric;
Thomas, Séverine;
Duchateau, Philippe;
Pâques, Frédéric

Publication type:

Article

Extracellular signal-regulated kinase 1/2-mediated phosphorylation of p300 enhances myosin heavy chain I/β gene expression via acetylation of nuclear factor of activated T cells c1.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 14, p. 5907, doi. 10.1093/nar/gkr162

By:

Meissner, Joachim D.;
Freund, Robert;
Krone, Dorothee;
Umeda, Patrick K.;
Chang, Kin-Chow;
Gros, Gerolf;
Scheibe, Renate J.

Publication type:

Article

Taxonomic classification of metagenomic shotgun sequences with CARMA3.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 14, p. e91, doi. 10.1093/nar/gkr225

By:

Gerlach, Wolfgang;
Stoye, Jens

Publication type:

Article

Point mutations in the Rpb9-homologous domain of Rpc11 that impair transcription termination by RNA polymerase III.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 14, p. 6100, doi. 10.1093/nar/gkr182

By:

Iben, James R.;
Mazeika, Julie K.;
Hasson, Sam;
Rijal, Keshab;
Arimbasseri, Aneeshkumar G.;
Russo, Amy N.;
Maraia, Richard J.

Publication type:

Article

Zinc is essential for high-affinity DNA binding and recombinase activity of ϕC31 integrase.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 14, p. 6137, doi. 10.1093/nar/gkr220

By:

McEwan, Andrew R.;
Raab, Andrea;
Kelly, Sharon M.;
Feldmann, Jörg;
Smith, Margaret C. M.

Publication type:

Article

High regularity of Z-DNA revealed by ultra high-resolution crystal structure at 0.55 Å†.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 14, p. 6238, doi. 10.1093/nar/gkr202

By:

Brzezinski, Krzysztof;
Brzuszkiewicz, Anna;
Dauter, Miroslawa;
Kubicki, Maciej;
Jaskolski, Mariusz;
Dauter, Zbigniew

Publication type:

Article

8-Oxo-7,8-dihydroguanine in DNA does not constitute a barrier to transcription, but is converted into transcription-blocking damage by OGG1.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 14, p. 5926, doi. 10.1093/nar/gkr163

By:

Kitsera, Nataliya;
Stathis, Dimitrios;
Lühnsdorf, Bork;
Müller, Heiko;
Carell, Thomas;
Epe, Bernd;
Khobta, Andriy

Publication type:

Article

Mechanism of RecO recruitment to DNA by single-stranded DNA binding protein.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 14, p. 6305, doi. 10.1093/nar/gkr199

By:

Ryzhikov, Mikhail;
Koroleva, Olga;
Postnov, Dmitri;
Tran, Andrew;
Korolev, Sergey

Publication type:

Article

Efficient mutagenesis of the rhodopsin gene in rod photoreceptor neurons in mice.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 14, p. 5955, doi. 10.1093/nar/gkr196

By:

Chan, Fung;
Hauswirth, William W.;
Wensel, Theodore G.;
Wilson, John H.

Publication type:

Article

A protein shuttle system to target RNA into mitochondria.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 14, p. e96, doi. 10.1093/nar/gkr380

By:

Sieber, François;
Placido, Antonio;
El Farouk-Ameqrane, Samira;
Duchêne, Anne-Marie;
Maréchal-Drouard, Laurence

Publication type:

Article

Evolutionary divergence and limits of conserved non-coding sequence detection in plant genomes.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 14, p. 6029, doi. 10.1093/nar/gkr179

By:

Reineke, Anna R.;
Bornberg-Bauer, Erich;
Gu, Jenny

Publication type:

Article

TT2NE: a novel algorithm to predict RNA secondary structures with pseudoknots.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 14, p. e93, doi. 10.1093/nar/gkr240

By:

Bon, Michaël;
Orland, Henri

Publication type:

Article

How does DNA break during chromosomal translocations?

Published in:

Nucleic Acids Research, 2011, v. 39, n. 14, p. 5813, doi. 10.1093/nar/gkr223

By:

Nambiar, Mridula;
Raghavan, Sathees C.

Publication type:

Article

Zim17/Tim15 links mitochondrial iron–sulfur cluster biosynthesis to nuclear genome stability.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 14, p. 6002

By:

Díaz de la Loza, María del Carmen;
Gallardo, Mercedes;
García-Rubio, María Luisa;
Izquierdo, Alicia;
Herrero, Enrique;
Aguilera, Andrés;
Wellinger, Ralf Erik

Publication type:

Article

Subscriptions.

Published in:: Nucleic Acids Research, 2011, v. 39, n. 14, p. iii, doi. 10.1093/nar/gkr678
Publication type:: Article

Specialization versus adaptation: two strategies employed by cyanophages to enhance their translation efficiencies.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 14, p. 6016, doi. 10.1093/nar/gkr169

By:

Limor-Waisberg, Keren;
Carmi, Asaf;
Scherz, Avigdor;
Pilpel, Yitzhak;
Furman, Itay

Publication type:

Article

Activity of the human immunodeficiency virus type 1 cell cycle-dependent internal ribosomal entry site is modulated by IRES trans-acting factors.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 14, p. 6186, doi. 10.1093/nar/gkr189

By:

Vallejos, Maricarmen;
Deforges, Jules;
Plank, Terra-Dawn M.;
Letelier, Alejandro;
Ramdohr, Pablo;
Abraham, Christopher G.;
Valiente-Echeverría, Fernando;
Kieft, Jeffrey S.;
Sargueil, Bruno;
López-Lastra, Marcelo

Publication type:

Article

Messenger RNA degradation is initiated at the 5′ end and follows sequence- and condition-dependent modes in chloroplasts.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 14, p. 6213, doi. 10.1093/nar/gkr226

By:

Salvador, Maria L.;
Suay, Loreto;
Klein, Uwe

Publication type:

Article

A DNA minor groove electronegative potential genome map based on photo-chemical probing.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 14, p. 6269, doi. 10.1093/nar/gkr204

By:

Lindemose, Søren;
Nielsen, Peter Eigil;
Hansen, Morten;
Møllegaard, Niels Erik

Publication type:

Article

Mechanistic analysis of Xenopus EXO1's function in 5′-strand resection at DNA double-strand breaks.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 14, p. 5967, doi. 10.1093/nar/gkr216

By:

Liao, Shuren;
Toczylowski, Thomas;
Yan, Hong

Publication type:

Article

Complete characterization of the edited transcriptome of the mitochondrion of Physarum polycephalum using deep sequencing of RNA.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 14, p. 6044, doi. 10.1093/nar/gkr180

By:

Bundschuh, R.;
Altmüller, J.;
Becker, C.;
Nürnberg, P.;
Gott, J. M.

Publication type:

Article

The origin of genetic instability in CCTG repeats.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 14, p. 6260, doi. 10.1093/nar/gkr185

By:

Lam, Sik Lok;
Wu, Feng;
Yang, Hao;
Chi, Lai Man

Publication type:

Article

Cellular heat shock factor 1 positively regulates human immunodeficiency virus-1 gene expression and replication by two distinct pathways.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 14, p. 5879, doi. 10.1093/nar/gkr198

By:

Rawat, Pratima;
Mitra, Debashis

Publication type:

Article

Gcn4 misregulation reveals a direct role for the evolutionary conserved EKC/KEOPS in the t6A modification of tRNAs.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 14, p. 6148, doi. 10.1093/nar/gkr178

By:

Daugeron, Marie-Claire;
Lenstra, Tineke L.;
Frizzarin, Martina;
El Yacoubi, Basma;
Liu, Xipeng;
Baudin-Baillieu, Agnès;
Lijnzaad, Philip;
Decourty, Laurence;
Saveanu, Cosmin;
Jacquier, Alain;
Holstege, Frank C. P.;
de Crécy-Lagard, Valérie;
van Tilbeurgh, Herman;
Libri, Domenico

Publication type:

Article

Crosstalk between c-Jun and TAp73α/β contributes to the apoptosis–survival balance.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 14, p. 6069, doi. 10.1093/nar/gkr028

By:

Koeppel, Max;
van Heeringen, Simon J.;
Kramer, Daniela;
Smeenk, Leonie;
Janssen-Megens, Eva;
Hartmann, Marianne;
Stunnenberg, Hendrik G.;
Lohrum, Marion

Publication type:

Article

Cdt1 proteolysis is promoted by dual PIP degrons and is modulated by PCNA ubiquitylation.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 14, p. 5978, doi. 10.1093/nar/gkr222

By:

Guarino, Estrella;
Shepherd, Marianne E. A.;
Salguero, Israel;
Hua, Hui;
Deegan, Rachel S.;
Kearsey, Stephen E.

Publication type:

Article

Long-range chromatin interactions at the mouse Igf2/H19 locus reveal a novel paternally expressed long non-coding RNA.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 14, p. 5893, doi. 10.1093/nar/gkr209

By:

Court, Franck;
Baniol, Marion;
Hagege, Hélène;
Petit, Julie Sandrine;
Lelay-Taha, Marie-Noëlle;
Carbonell, Françoise;
Weber, Michael;
Cathala, Guy;
Forne, Thierry

Publication type:

Article

G-quadruplex formation at the 3′ end of telomere DNA inhibits its extension by telomerase, polymerase and unwinding by helicase.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 14, p. 6229, doi. 10.1093/nar/gkr164

By:

Wang, Quan;
Liu, Jia-quan;
Chen, Zhao;
Zheng, Ke-wei;
Chen, Chang-yue;
Hao, Yu-hua;
Tan, Zheng

Publication type:

Article

Modularly assembled designer TAL effector nucleases for targeted gene knockout and gene replacement in eukaryotes.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 14, p. 6315, doi. 10.1093/nar/gkr188

By:

Li, Ting;
Huang, Sheng;
Zhao, Xuefeng;
Wright, David A.;
Carpenter, Susan;
Spalding, Martin H.;
Weeks, Donald P.;
Yang, Bing

Publication type:

Article

A novel DNA nuclease is stimulated by association with the GINS complex.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 14, p. 6114, doi. 10.1093/nar/gkr181

By:

Li, Zhuo;
Pan, Miao;
Santangelo, Thomas J.;
Chemnitz, Wiebke;
Yuan, Wei;
Edwards, James L.;
Hurwitz, Jerard;
Reeve, John N.;
Kelman, Zvi

Publication type:

Article

RNIE: genome-wide prediction of bacterial intrinsic terminators.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 14, p. 5845, doi. 10.1093/nar/gkr168

By:

Gardner, Paul P.;
Barquist, Lars;
Bateman, Alex;
Nawrocki, Eric P.;
Weinberg, Zasha

Publication type:

Article

Regulation of the alternative splicing of tau exon 10 by SC35 and Dyrk1A.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 14, p. 6161, doi. 10.1093/nar/gkr195

By:

Qian, Wei;
Liang, Hongwei;
Shi, Jianhua;
Jin, Nana;
Grundke-Iqbal, Inge;
Iqbal, Khalid;
Gong, Cheng-Xin;
Liu, Fei

Publication type:

Article

A rapid, inexpensive yeast-based dual-fluorescence assay of programmed—1 ribosomal frameshifting for high-throughput screening.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 14, p. e97, doi. 10.1093/nar/gkr382

By:

Rakauskaitė, Rasa;
Liao, Pei-Yu;
Rhodin, Michael H. J.;
Lee, Kelvin;
Dinman, Jonathan D.

Publication type:

Article

Cryptic splice sites and split genes.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 14, p. 5837, doi. 10.1093/nar/gkr203

By:

Kapustin, Yuri;
Chan, Elcie;
Sarkar, Rupa;
Wong, Frederick;
Vorechovsky, Igor;
Winston, Robert M.;
Tatusova, Tatiana;
Dibb, Nick J.

Publication type:

Article

Disruptive mRNA folding increases translational efficiency of catechol-O-methyltransferase variant.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 14, p. 6201, doi. 10.1093/nar/gkr165

By:

Tsao, Douglas;
Shabalina, Svetlana A.;
Gauthier, Josée;
Dokholyan, Nikolay V.;
Diatchenko, Luda

Publication type:

Article

Evidence for an evolutionary antagonism between Mrr and Type III modification systems.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 14, p. 5991, doi. 10.1093/nar/gkr219

By:

Tesfazgi Mebrhatu, Mehari;
Wywial, Ewa;
Ghosh, Anirban;
Michiels, Chris W.;
Lindner, Ariel B.;
Taddei, François;
Bujnicki, Janusz M.;
Van Melderen, Laurence;
Aertsen, Abram

Publication type:

Article

MicroRNA 130 family regulates the hypoxia response signal through the P-body protein DDX6.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 14, p. 6086, doi. 10.1093/nar/gkr194

By:

Saito, Ken;
Kondo, Eisaku;
Matsushita, Masayuki

Publication type:

Article

5-Hydroxy-5-methylhydantoin DNA lesion, a molecular trap for DNA glycosylases.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 14, p. 6277, doi. 10.1093/nar/gkr215

By:

Le Bihan, Yann-Vaï;
Angeles Izquierdo, Maria;
Coste, Franck;
Aller, Pierre;
Culard, Françoise;
Gehrke, Tim H.;
Essalhi, Kadija;
Carell, Thomas;
Castaing, Bertrand

Publication type:

Article

Nucleic Acids Research.

Published in:: Nucleic Acids Research, 2011, v. 39, n. 14, p. ii, doi. 10.1093/nar/gkr676
Publication type:: Article

Biological insights from topology independent comparison of protein 3D structures.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 14, p. e94, doi. 10.1093/nar/gkr348

By:

Nguyen, Minh N.;
Madhusudhan, M. S.

Publication type:

Article

Re-engineering multicloning sites for function and convenience.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 14, p. e92, doi. 10.1093/nar/gkr346

By:

Crook, Nathan C.;
Freeman, Elizabeth S.;
Alper, Hal S.

Publication type:

Article

The relative efficiency of homology-directed repair has distinct effects on proper anaphase chromosome separation.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 14, p. 5935, doi. 10.1093/nar/gkr187

By:

Laulier, Corentin;
Cheng, Anita;
Stark, Jeremy M.

Publication type:

Article

A hyper-mutant of the unusual σ70-Pr promoter bypasses synergistic ppGpp/DksA co-stimulation.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 14, p. 5853, doi. 10.1093/nar/gkr167

By:

del Peso-Santos, Teresa;
Bernardo, Lisandro M. D.;
Skärfstad, Eleonore;
Holmfeldt, Linda;
Togneri, Peter;
Shingler, Victoria

Publication type:

Article