Works matching IS 03051048 AND DT 2011 AND VI 39 AND IP 13

Results: 49

Characterization of plastid psbT sense and antisense RNAs.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 13, p. 5379, doi. 10.1093/nar/gkr143

By:

Zghidi-Abouzid, Ouafa;
Merendino, Livia;
Buhr, Frank;
Malik Ghulam, Mustafa;
Lerbs-Mache, Silva

Publication type:

Article

Crystal structure of a KSHV–SOX–DNA complex: insights into the molecular mechanisms underlying DNase activity and host shutoff.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 13, p. 5744

By:

Bagnéris, Claire;
Briggs, Louise C.;
Savva, Renos;
Ebrahimi, Bahram;
Barrett, Tracey E.

Publication type:

Article

Effect of base sequence on the DNA cross-linking properties of pyrrolobenzodiazepine (PBD) dimers.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 13, p. 5800, doi. 10.1093/nar/gkr122

By:

Rahman, Khondaker M.;
James, Colin H.;
Thurston, David E.

Publication type:

Article

The structural basis for recognition of base J containing DNA by a novel DNA binding domain in JBP1.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 13, p. 5715, doi. 10.1093/nar/gkr125

By:

Heidebrecht, Tatjana;
Christodoulou, Evangelos;
Chalmers, Michael J.;
Jan, Sabrina;
ter Riet, Bas;
Grover, Rajesh K.;
Joosten, Robbie P.;
Littler, Dene;
van Luenen, Henri;
Griffin, Patrick R.;
Wentworth, Paul;
Borst, Piet;
Perrakis, Anastassis

Publication type:

Article

The type II poly(A)-binding protein PABP-2 genetically interacts with the let-7 miRNA and elicits heterochronic phenotypes in Caenorhabditis elegans.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 13, p. 5647, doi. 10.1093/nar/gkr145

By:

Hurschler, Benjamin A.;
Harris, David T.;
Großhans, Helge

Publication type:

Article

Direct measurement of DNA bending by type IIA topoisomerases: implications for non-equilibrium topology simplification.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 13, p. 5729, doi. 10.1093/nar/gkr109

By:

Hardin, Ashley H.;
Sarkar, Susanta K.;
Seol, Yeonee;
Liou, Grace F.;
Osheroff, Neil;
Neuman, Keir C.

Publication type:

Article

Analysis of microRNA turnover in mammalian cells following Dicer1 ablation.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 13, p. 5692, doi. 10.1093/nar/gkr148

By:

Gantier, Michael P.;
McCoy, Claire E.;
Rusinova, Irina;
Saulep, Damien;
Wang, Die;
Xu, Dakang;
Irving, Aaron T.;
Behlke, Mark A.;
Hertzog, Paul J.;
Mackay, Fabienne;
Williams, Bryan R. G.

Publication type:

Article

Principal component analysis-based filtering improves detection for Affymetrix gene expression arrays.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 13, p. e86, doi. 10.1093/nar/gkr241

By:

Lu, Jun;
Kerns, Robnet T.;
Peddada, Shyamal D.;
Bushel, Pierre R.

Publication type:

Article

Antisense RNA associated with biological regulation of a restriction–modification system.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 13, p. 5622, doi. 10.1093/nar/gkr166

By:

Mruk, Iwona;
Liu, Yaoping;
Ge, Liying;
Kobayashi, Ichizo

Publication type:

Article

In vitro transcription profiling of the σS subunit of bacterial RNA polymerase: re-definition of the σS regulon and identification of σS-specific promoter sequence elements.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 13, p. 5338, doi. 10.1093/nar/gkr129

By:

Maciąg, Anna;
Peano, Clelia;
Pietrelli, Alessandro;
Egli, Thomas;
De Bellis, Gianluca;
Landini, Paolo

Publication type:

Article

The activity of the histone chaperone yeast Asf1 in the assembly and disassembly of histone H3/H4–DNA complexes.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 13, p. 5449, doi. 10.1093/nar/gkr097

By:

Donham, Douglas C.;
Scorgie, Jean K.;
Churchill, Mair E. A.

Publication type:

Article

NOA: a novel Network Ontology Analysis method.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 13, p. e87, doi. 10.1093/nar/gkr251

By:

Wang, Jiguang;
Huang, Qiang;
Liu, Zhi-Ping;
Wang, Yong;
Wu, Ling-Yun;
Chen, Luonan;
Zhang, Xiang-Sun

Publication type:

Article

Assembly of custom TALE-type DNA binding domains by modular cloning.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 13, p. 5790, doi. 10.1093/nar/gkr151

By:

Morbitzer, Robert;
Elsaesser, Janett;
Hausner, Jens;
Lahaye, Thomas

Publication type:

Article

Identification of a methylated oligoribonucleotide as a potent inhibitor of HIV-1 reverse transcription complex.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 13, p. 5586, doi. 10.1093/nar/gkr117

By:

Grigorov, Boyan;
Bocquin, Anne;
Gabus, Caroline;
Avilov, Sergey;
Mély, Yves;
Agopian, Audrey;
Divita, Gilles;
Gottikh, Marina;
Witvrouw, Myriam;
Darlix, Jean-Luc

Publication type:

Article

LLM3D: a log-linear modeling-based method to predict functional gene regulatory interactions from genome-wide expression data.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 13, p. 5313, doi. 10.1093/nar/gkr139

By:

Geeven, Geert;
MacGillavry, Harold D.;
Eggers, Ruben;
Sassen, Marion M.;
Verhaagen, Joost;
Smit, August B.;
de Gunst, Mathisca C. M.;
van Kesteren, Ronald E.

Publication type:

Article

Unidirectional constant rate motion of the ribosomal scanning particle during eukaryotic translation initiation.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 13, p. 5555, doi. 10.1093/nar/gkr147

By:

Vassilenko, Konstantin S.;
Alekhina, Olga M.;
Dmitriev, Sergey E.;
Shatsky, Ivan N.;
Spirin, Alexander S.

Publication type:

Article

Inhibition of mutant huntingtin expression by RNA duplex targeting expanded CAG repeats.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 13, p. 5578, doi. 10.1093/nar/gkr156

By:

Fiszer, Agnieszka;
Mykowska, Agnieszka;
Krzyzosiak, Wlodzimierz J.

Publication type:

Article

Diversity of bacterial type II toxin–antitoxin systems: a comprehensive search and functional analysis of novel families.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 13, p. 5513, doi. 10.1093/nar/gkr131

By:

Leplae, Raphaël;
Geeraerts, Damien;
Hallez, Régis;
Guglielmini, Julien;
Drèze, Pierre;
Van Melderen, Laurence

Publication type:

Article

Global analysis of the mammalian RNA degradome reveals widespread miRNA-dependent and miRNA-independent endonucleolytic cleavage.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 13, p. 5658, doi. 10.1093/nar/gkr110

By:

Bracken, Cameron P.;
Szubert, Jan M.;
Mercer, Tim R.;
Dinger, Marcel E.;
Thomson, Daniel W.;
Mattick, John S.;
Michael, Michael Z.;
Goodall, Gregory J.

Publication type:

Article

An all-statistics, high-speed algorithm for the analysis of copy number variation in genomes.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 13, p. e89, doi. 10.1093/nar/gkr137

By:

Chen, Chih-Hao;
Lee, Hsing-Chung;
Ling, Qingdong;
Chen, Hsiao-Rong;
Ko, Yi-An;
Tsou, Tsong-Shan;
Wang, Sun-Chong;
Wu, Li-Ching;
Lee, H. C.

Publication type:

Article

Translational and transcriptional control of Sp1 against ischaemia through a hydrogen peroxide-activated internal ribosomal entry site pathway.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 13, p. 5412, doi. 10.1093/nar/gkr161

By:

Yeh, Shiu Hwa;
Yang, Wen Bin;
Gean, Po Wu;
Hsu, Chung Yi;
Tseng, Joseph T.;
Su, Tsung Ping;
Chang, Wen Chang;
Hung, Jan Jong

Publication type:

Article

Sequence-specific error profile of Illumina sequencers.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 13, p. e90, doi. 10.1093/nar/gkr344

By:

Nakamura, Kensuke;
Oshima, Taku;
Morimoto, Takuya;
Ikeda, Shun;
Yoshikawa, Hirofumi;
Shiwa, Yuh;
Ishikawa, Shu;
Linak, Margaret C.;
Hirai, Aki;
Takahashi, Hiroki;
Altaf-Ul-Amin, Md.;
Ogasawara, Naotake;
Kanaya, Shigehiko

Publication type:

Article

The FANC pathway is activated by adenovirus infection and promotes viral replication-dependent recombination.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 13, p. 5459, doi. 10.1093/nar/gkr084

By:

Cherubini, Gioia;
Naim, Valeria;
Caruso, Paola;
Burla, Romina;
Bogliolo, Massimo;
Cundari, Enrico;
Benihoud, Karim;
Saggio, Isabella;
Rosselli, Filippo

Publication type:

Article

Specific inhibition of NF-Y subunits triggers different cell proliferation defects.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 13, p. 5356, doi. 10.1093/nar/gkr128

By:

Benatti, Paolo;
Dolfini, Diletta;
Viganò, Alessandra;
Ravo, Maria;
Weisz, Alessandro;
Imbriano, Carol

Publication type:

Article

Discovery of SMAD4 promoters, transcription factor binding sites and deletions in juvenile polyposis patients.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 13, p. 5369, doi. 10.1093/nar/gkr091

By:

Calva, Daniel;
Dahdaleh, Fadi S.;
Woodfield, George;
Weigel, Ronald J.;
Carr, Jennifer C.;
Chinnathambi, Sathivel;
Howe, James R.

Publication type:

Article

Novel retrotransposed imprinted locus identified at human 6p25.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 13, p. 5388, doi. 10.1093/nar/gkr108

By:

Zhang, Aiping;
Skaar, David A.;
Li, Yue;
Huang, Dale;
Price, Thomas M.;
Murphy, Susan K.;
Jirtle, Randy L.

Publication type:

Article

Evidence for a remodelling of DNA-PK upon autophosphorylation from electron microscopy studies.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 13, p. 5757, doi. 10.1093/nar/gkr146

By:

Morris, Edward P.;
Rivera-Calzada, Angel;
da Fonseca, Paula C. A.;
Llorca, Oscar;
Pearl, Laurence H.;
Spagnolo, Laura

Publication type:

Article

Single-molecule analysis of genome rearrangements in cancer.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 13, p. e85, doi. 10.1093/nar/gkr227

By:

Pole, Jessica C. M.;
McCaughan, Frank;
Newman, Scott;
Howarth, Karen D.;
Dear, Paul H.;
Edwards, Paul A. W.

Publication type:

Article

Cleavage of a model DNA replication fork by a methyl-specific endonuclease.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 13, p. 5489, doi. 10.1093/nar/gkr153

By:

Ishikawa, Ken;
Handa, Naofumi;
Sears, Lauren;
Raleigh, Elisabeth A.;
Kobayashi, Ichizo

Publication type:

Article

Comparative and functional analysis of intron-mediated enhancement signals reveals conserved features among plants.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 13, p. 5328, doi. 10.1093/nar/gkr043

By:

Parra, G.;
Bradnam, K.;
Rose, Alan B.;
Korf, Ian

Publication type:

Article

Monitoring the reversible B to A-like transition of DNA in eukaryotic cells using Fourier transform infrared spectroscopy.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 13, p. 5439, doi. 10.1093/nar/gkr175

By:

Whelan, Donna R.;
Bambery, Keith R.;
Heraud, Philip;
Tobin, Mark J.;
Diem, Max;
McNaughton, Don;
Wood, Bayden R.

Publication type:

Article

Intrinsic restriction activity by apolipoprotein B mRNA editing enzyme APOBEC1 against the mobility of autonomous retrotransposons.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 13, p. 5538, doi. 10.1093/nar/gkr124

By:

Ikeda, Terumasa;
Abd El Galil, Khaled Hussein;
Tokunaga, Kenzo;
Maeda, Kazuhiko;
Sata, Tetsutaro;
Sakaguchi, Nobuo;
Heidmann, Thierry;
Koito, Atsushi

Publication type:

Article

An essential role for trimethylguanosine RNA caps in Saccharomyces cerevisiae meiosis and their requirement for splicing of SAE3 and PCH2 meiotic pre-mRNAs.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 13, p. 5633, doi. 10.1093/nar/gkr083

By:

Qiu, Zhicheng R.;
Shuman, Stewart;
Schwer, Beate

Publication type:

Article

Widespread occurrence of non-canonical transcription termination by human RNA polymerase III.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 13, p. 5499, doi. 10.1093/nar/gkr074

By:

Orioli, Andrea;
Pascali, Chiara;
Quartararo, Jade;
Diebel, Kevin W.;
Praz, Viviane;
Romascano, David;
Percudani, Riccardo;
van Dyk, Linda F.;
Hernandez, Nouria;
Teichmann, Martin;
Dieci, Giorgio

Publication type:

Article

Transcriptional gene silencing in mammalian cells by miRNA mimics that target gene promoters.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 13, p. 5682, doi. 10.1093/nar/gkr155

By:

Younger, Scott T.;
Corey, David R.

Publication type:

Article

Force-driven unbinding of proteins HU and Fis from DNA quantified using a thermodynamic Maxwell relation.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 13, p. 5568, doi. 10.1093/nar/gkr141

By:

Xiao, Botao;
Zhang, Houyin;
Johnson, Reid C.;
Marko, John F.

Publication type:

Article

Bromodomain protein 7 interacts with PRMT5 and PRC2, and is involved in transcriptional repression of their target genes.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 13, p. 5424, doi. 10.1093/nar/gkr170

By:

Tae, Sookil;
Karkhanis, Vrajesh;
Velasco, Kevin;
Yaneva, Mariana;
Erdjument-Bromage, Hediye;
Tempst, Paul;
Sif, Saïd

Publication type:

Article

The alternative protein isoform NK2B, encoded by the vnd/NK-2 proneural gene, directly activates transcription and is expressed following the start of cells differentiation.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 13, p. 5401, doi. 10.1093/nar/gkr121

By:

Stepchenko, Alexander G.;
Pankratova, Elizaveta V.;
Doronin, Semen A.;
Gulag, Pavel V.;
Georgieva, Sofia G.

Publication type:

Article

A structural determinant required for RNA editing.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 13, p. 5669, doi. 10.1093/nar/gkr144

By:

Tian, Nan;
Yang, Yun;
Sachsenmaier, Nora;
Muggenhumer, Dominik;
Bi, Jingpei;
Waldsich, Christina;
Jantsch, Michael F.;
Jin, Yongfeng

Publication type:

Article

Subscriptions.

Published in:: Nucleic Acids Research, 2011, v. 39, n. 13, p. iii, doi. 10.1093/nar/gkr633
Publication type:: Article

Evolutionary expansion of the Ras switch regulatory module in eukaryotes.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 13, p. 5526, doi. 10.1093/nar/gkr154

By:

Díez, Diego;
Sánchez-Jiménez, Francisca;
Ranea, Juan A. G.

Publication type:

Article

Nucleic Acids Research.

Published in:: Nucleic Acids Research, 2011, v. 39, n. 13, p. i, doi. 10.1093/nar/gkr631
Publication type:: Article

Irreparable complex DNA double-strand breaks induce chromosome breakage in organotypic three-dimensional human lung epithelial cell culture.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 13, p. 5474, doi. 10.1093/nar/gkr149

By:

Asaithamby, Aroumougame;
Hu, Burong;
Delgado, Oliver;
Ding, Liang-Hao;
Story, Michael D.;
Minna, John D.;
Shay, Jerry W.;
Chen, David J.

Publication type:

Article

Novel post-synthetic generation, isomeric resolution, and characterization of Fapy-dG within oligodeoxynucleotides: differential anomeric impacts on DNA duplex properties.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 13, p. 5776, doi. 10.1093/nar/gkr082

By:

Lukin, Mark;
Minetti, Conceição A. S. A.;
Remeta, David P.;
Attaluri, Sivaprasad;
Johnson, Francis;
Breslauer, Kenneth J.;
de los Santos, Carlos

Publication type:

Article

Paired mutations abolish and restore the balanced annealing and melting activities of ORF1p that are required for LINE-1 retrotransposition.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 13, p. 5611, doi. 10.1093/nar/gkr171

By:

Evans, James D.;
Peddigari, Suresh;
Chaurasiya, Kathy R.;
Williams, Mark C.;
Martin, Sandra L.

Publication type:

Article

RNA binding properties of conserved protein subunits of human RNase P.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 13, p. 5704, doi. 10.1093/nar/gkr126

By:

Reiner, Robert;
Alfiya-Mor, Noa;
Berrebi-Demma, Mishka;
Wesolowski, Donna;
Altman, Sidney;
Jarrous, Nayef

Publication type:

Article

The parallel G-quadruplex structure of vertebrate telomeric repeat sequences is not the preferred folding topology under physiological conditions.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 13, p. 5768, doi. 10.1093/nar/gkr174

By:

Hänsel, Robert;
Löhr, Frank;
Foldynová-Trantírková, Silvie;
Bamberg, Ernst;
Trantírek, Lukáš;
Dötsch, Volker

Publication type:

Article

A type IV modification-dependent restriction enzyme SauUSI from Staphylococcus aureus subsp. aureus USA300.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 13, p. 5597, doi. 10.1093/nar/gkr098

By:

Xu, Shuang-yong;
Corvaglia, Anna R.;
Chan, Siu-Hong;
Zheng, Yu;
Linder, Patrick

Publication type:

Article

QuartetS: a fast and accurate algorithm for large-scale orthology detection.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 13, p. e88, doi. 10.1093/nar/gkr308

By:

Yu, Chenggang;
Zavaljevski, Nela;
Desai, Valmik;
Reifman, Jaques

Publication type:

Article