Works matching IS 03051048 AND DT 2011 AND VI 39 AND IP 12

Results: 43

Engineering ligand-responsive RNA controllers in yeast through the assembly of RNase III tuning modules.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 12, p. 5299, doi. 10.1093/nar/gkr090

By:

Babiskin, Andrew H.;
Smolke, Christina D.

Publication type:

Article

cn.FARMS: a latent variable model to detect copy number variations in microarray data with a low false discovery rate.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 12, p. e79, doi. 10.1093/nar/gkr197

By:

Clevert, Djork-Arné;
Mitterecker, Andreas;
Mayr, Andreas;
Klambauer, Günter;
Tuefferd, Marianne;
Bondt, An De;
Talloen, Willem;
Göhlmann, Hinrich;
Hochreiter, Sepp

Publication type:

Article

Guanine radical chemistry reveals the effect of thermal fluctuations in gene promoter regions.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 12, p. 5276, doi. 10.1093/nar/gkr096

By:

Cuesta-López, Santiago;
Menoni, Hervé;
Angelov, Dimitar;
Peyrard, Michel

Publication type:

Article

Sam68 marks the transcriptionally active stages of spermatogenesis and modulates alternative splicing in male germ cells.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 12, p. 4961, doi. 10.1093/nar/gkr085

By:

Paronetto, Maria Paola;
Messina, Valeria;
Barchi, Marco;
Geremia, Raffaele;
Richard, Stéphane;
Sette, Claudio

Publication type:

Article

Measurement of telomere DNA content by dot blot analysis.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 12, p. e84, doi. 10.1093/nar/gkr235

By:

Kimura, Masayuki;
Aviv, Abraham

Publication type:

Article

PepFect 14, a novel cell-penetrating peptide for oligonucleotide delivery in solution and as solid formulation.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 12, p. 5284, doi. 10.1093/nar/gkr072

By:

Ezzat, Kariem;
EL Andaloussi, Samir;
Zaghloul, Eman M.;
Lehto, Taavi;
Lindberg, Staffan;
Moreno, Pedro M. D.;
Viola, Joana R.;
Magdy, Tarek;
Abdo, Rania;
Guterstam, Peter;
Sillard, Rannar;
Hammond, Suzan M.;
Wood, Matthew J. A.;
Arzumanov, Andrey A.;
Gait, Michael J.;
Smith, C. I. Edvard;
Hällbrink, Mattias;
Langel, Ülo

Publication type:

Article

Activation of XerCD-dif recombination by the FtsK DNA translocase.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 12, p. 5140, doi. 10.1093/nar/gkr078

By:

Grainge, Ian;
Lesterlin, Christian;
Sherratt, David J.

Publication type:

Article

Alternative splicing and genetic diversity: silencers are more frequently modified by SNVs associated with alternative exon/intron borders.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 12, p. 4942, doi. 10.1093/nar/gkr081

By:

de Souza, Jorge E. S.;
Ramalho, Rodrigo F.;
Galante, Pedro A. F.;
Meyer, Diogo;
de Souza, Sandro J.

Publication type:

Article

Crosslinking of DNA repair and replication proteins to DNA in cells treated with 6-thioguanine and UVA.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 12, p. 5057, doi. 10.1093/nar/gkr112

By:

Gueranger, Quentin;
Kia, Azadeh;
Frith, David;
Karran, Peter

Publication type:

Article

Efficient design and assembly of custom TALEN and other TAL effector-based constructs for DNA targeting.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 12, p. e82, doi. 10.1093/nar/gkr218

By:

Cermak, Tomas;
Doyle, Erin L.;
Christian, Michelle;
Wang, Li;
Zhang, Yong;
Schmidt, Clarice;
Baller, Joshua A.;
Somia, Nikunj V.;
Bogdanove, Adam J.;
Voytas, Daniel F.

Publication type:

Article

A modified bacterial one-hybrid system yields improved quantitative models of transcription factor specificity.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 12, p. e83, doi. 10.1093/nar/gkr239

By:

Christensen, Ryan G.;
Gupta, Ankit;
Zuo, Zheng;
Schriefer, Lawrence A.;
Wolfe, Scot A.;
Stormo, Gary D.

Publication type:

Article

G4 motifs correlate with promoter-proximal transcriptional pausing in human genes.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 12, p. 4975, doi. 10.1093/nar/gkr079

By:

Eddy, Johanna;
Vallur, Aarthy C.;
Varma, Sudir;
Liu, Hongfang;
Reinhold, William C.;
Pommier, Yves;
Maizels, Nancy

Publication type:

Article

Human microRNA hsa-miR-125a-5p interferes with expression of hepatitis B virus surface antigen.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 12, p. 5157, doi. 10.1093/nar/gkr067

By:

Potenza, Nicoletta;
Papa, Umberto;
Mosca, Nicola;
Zerbini, Francesca;
Nobile, Valentina;
Russo, Aniello

Publication type:

Article

Identification and characterization of the mitochondrial RNA polymerase and transcription factor in the fission yeast Schizosaccharomyces pombe.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 12, p. 5119, doi. 10.1093/nar/gkr103

By:

Jiang, Hengyi;
Sun, Wenxia;
Wang, Zhe;
Zhang, Jing;
Chen, Dongrong;
Murchie, Alastair I. H.

Publication type:

Article

PARG is recruited to DNA damage sites through poly(ADP-ribose)- and PCNA-dependent mechanisms.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 12, p. 5045, doi. 10.1093/nar/gkr099

By:

Mortusewicz, Oliver;
Fouquerel, Elise;
Amé, Jean-Christophe;
Leonhardt, Heinrich;
Schreiber, Valérie

Publication type:

Article

The Caenorhabditis elegans intermediate-size transcriptome shows high degree of stage-specific expression.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 12, p. 5203, doi. 10.1093/nar/gkr102

By:

Wang, Yunfei;
Chen, Jingjing;
Wei, Guifeng;
He, Housheng;
Zhu, Xiaopeng;
Xiao, Tengfei;
Yuan, Jiao;
Dong, Bo;
He, Shunmin;
Skogerbø, Geir;
Chen, Runsheng

Publication type:

Article

A method for counting PCR template molecules with application to next-generation sequencing.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 12, p. e81, doi. 10.1093/nar/gkr217

By:

Casbon, James A.;
Osborne, Robert J.;
Brenner, Sydney;
Lichtenstein, Conrad P.

Publication type:

Article

Nuclear protein LEDGF/p75 recognizes supercoiled DNA by a novel DNA-binding domain.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 12, p. 5067, doi. 10.1093/nar/gkr088

By:

Tsutsui, Kimiko M.;
Sano, Kuniaki;
Hosoya, Osamu;
Miyamoto, Tadashi;
Tsutsui, Ken

Publication type:

Article

Segrosome assembly at the pliable parH centromere.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 12, p. 5082

By:

Wu, Meiyi;
Zampini, Massimiliano;
Bussiek, Malte;
Hoischen, Christian;
Diekmann, Stephan;
Hayes, Finbarr

Publication type:

Article

Transcriptional regulation via TF-modifying enzymes: an integrative model-based analysis.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 12, p. e78, doi. 10.1093/nar/gkr172

By:

Everett, Logan J.;
Jensen, Shane T.;
Hannenhalli, Sridhar

Publication type:

Article

Actin and myosin contribute to mammalian mitochondrial DNA maintenance.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 12, p. 5098, doi. 10.1093/nar/gkr052

By:

Reyes, A.;
He, J.;
Mao, C. C.;
Bailey, L. J.;
Di Re, M.;
Sembongi, H.;
Kazak, L.;
Dzionek, K.;
Holmes, J. B.;
Cluett, T. J.;
Harbour, M. E.;
Fearnley, I. M.;
Crouch, R. J.;
Conti, M. A.;
Adelstein, R. S.;
Walker, J. E.;
Holt, I. J.

Publication type:

Article

Modulation of Dnmt3b function in vitro by interactions with Dnmt3L, Dnmt3a and Dnmt3b splice variants.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 12, p. 4984, doi. 10.1093/nar/gkr116

By:

Van Emburgh, Beth O.;
Robertson, Keith D.

Publication type:

Article

Escherichia coli σ70 senses sequence and conformation of the promoter spacer region.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 12, p. 5109, doi. 10.1093/nar/gkr080

By:

Singh, Shivani S.;
Typas, Athanasios;
Hengge, Regine;
Grainger, David C.

Publication type:

Article

Rapid binding and release of Hfq from ternary complexes during RNA annealing.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 12, p. 5193, doi. 10.1093/nar/gkr062

By:

Hopkins, Julia F.;
Panja, Subrata;
Woodson, Sarah A.

Publication type:

Article

Structural basis for the binding of IRES RNAs to the head of the ribosomal 40S subunit.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 12, p. 5264, doi. 10.1093/nar/gkr114

By:

Muhs, Margarita;
Yamamoto, Hiroshi;
Ismer, Jochen;
Takaku, Hiroaki;
Nashimoto, Masayuki;
Uchiumi, Toshio;
Nakashima, Nobuhiko;
Mielke, Thorsten;
Hildebrand, Peter W.;
Nierhaus, Knud H.;
Spahn, Christian M. T.

Publication type:

Article

On the structure and dynamics of the complex of the nucleosome and the linker histone.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 12, p. 5255, doi. 10.1093/nar/gkr101

By:

Pachov, Georgi V.;
Gabdoulline, Razif R.;
Wade, Rebecca C.

Publication type:

Article

Ribosomal scanning on the 5′-untranslated region of the human immunodeficiency virus RNA genome.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 12, p. 5232, doi. 10.1093/nar/gkr113

By:

Berkhout, Ben;
Arts, Kelly;
Abbink, Truus E. M.

Publication type:

Article

The initial U3 snoRNA:pre-rRNA base pairing interaction required for pre-18S rRNA folding revealed by in vivo chemical probing.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 12, p. 5164, doi. 10.1093/nar/gkr044

By:

Dutca, Laura M.;
Gallagher, Jennifer E. G.;
Baserga, Susan J.

Publication type:

Article

Subscriptions.

Published in:: Nucleic Acids Research, 2011, v. 39, n. 12, p. iii, doi. 10.1093/nar/gkr584
Publication type:: Article

Nucleic Acids Research.

Published in:: Nucleic Acids Research, 2011, v. 39, n. 12, p. i, doi. 10.1093/nar/gkr582
Publication type:: Article

Identification of altered function alleles that affect Bacillus subtilis PerR metal ion selectivity.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 12, p. 5036

By:

Ma, Zhen;
Lee, Jin-Won;
Helmann, John D.

Publication type:

Article

Massive production of small RNAs from a non-coding region of Cauliflower mosaic virus in plant defense and viral counter-defense.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 12, p. 5003, doi. 10.1093/nar/gkr119

By:

Blevins, Todd;
Rajeswaran, Rajendran;
Aregger, Michael;
Borah, Basanta K.;
Schepetilnikov, Mikhail;
Baerlocher, Loïc;
Farinelli, Laurent;
Meins, Frederick;
Hohn, Thomas;
Pooggin, Mikhail M.

Publication type:

Article

Elimination of a group II intron from a plastid gene causes a mutant phenotype.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 12, p. 5181, doi. 10.1093/nar/gkr105

By:

Petersen, Kerstin;
Schöttler, Mark A.;
Karcher, Daniel;
Thiele, Wolfram;
Bock, Ralph

Publication type:

Article

GPHMM: an integrated hidden Markov model for identification of copy number alteration and loss of heterozygosity in complex tumor samples using whole genome SNP arrays.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 12, p. 4928, doi. 10.1093/nar/gkr014

By:

Li, Ao;
Liu, Zongzhi;
Lezon-Geyda, Kimberly;
Sarkar, Sudipa;
Lannin, Donald;
Schulz, Vincent;
Krop, Ian;
Winer, Eric;
Harris, Lyndsay;
Tuck, David

Publication type:

Article

Activation of a microRNA response in trans reveals a new role for poly(A) in translational repression.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 12, p. 5215, doi. 10.1093/nar/gkr086

By:

Ricci, Emiliano P.;
Limousin, Taran;
Soto-Rifo, Ricardo;
Allison, Rachel;
Pöyry, Tuija;
Decimo, Didier;
Jackson, Richard J.;
Ohlmann, Théophile

Publication type:

Article

Mapping the sequences of potential guanine quadruplex motifs.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 12, p. 4917, doi. 10.1093/nar/gkr104

By:

Todd, Alan K.;
Neidle, Stephen

Publication type:

Article

Requirement of TFIIH kinase subunit Mat1 for RNA Pol II C-terminal domain Ser5 phosphorylation, transcription and mRNA turnover.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 12, p. 5025, doi. 10.1093/nar/gkr107

By:

Helenius, Katja;
Yang, Ying;
Tselykh, Timofey V.;
Pessa, Heli K. J.;
Frilander, Mikko J.;
Mäkelä, Tomi P.

Publication type:

Article

Analysis of microRNA signatures using size-coded ligation-mediated PCR.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 12, p. e80, doi. 10.1093/nar/gkr214

By:

Arefian, Ehsan;
Kiani, Jafar;
Soleimani, Masoud;
Shariati, S. Ali M.;
Aghaee-Bakhtiari, Seyed Hamid;
Atashi, Amir;
Gheisari, Yousof;
Ahmadbeigi, Naser;
Banaei-Moghaddam, Ali M.;
Naderi, Mahmood;
Namvarasl, Nabiolah;
Good, Liam;
Faridani, Omid R.

Publication type:

Article

Integrative genomic analysis of human ribosomal DNA.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 12, p. 4949, doi. 10.1093/nar/gkq1326

By:

Zentner, Gabriel E.;
Saiakhova, Alina;
Manaenkov, Pavel;
Adams, Mark D.;
Scacheri, Peter C.

Publication type:

Article

Reconstitution and characterization of the unconventional splicing of XBP1u mRNA in vitro.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 12, p. 5245, doi. 10.1093/nar/gkr132

By:

Shinya, Sayoko;
Kadokura, Hiroshi;
Imagawa, Yusuke;
Inoue, Michihiro;
Yanagitani, Kota;
Kohno, Kenji

Publication type:

Article

Dynamic competition of DsrA and rpoS fragments for the proximal binding site of Hfq as a means for efficient annealing.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 12, p. 5131, doi. 10.1093/nar/gkr075

By:

Hwang, Wonseok;
Arluison, Véronique;
Hohng, Sungchul

Publication type:

Article

Genomic mapping of 5-hydroxymethylcytosine in the human brain.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 12, p. 5015, doi. 10.1093/nar/gkr120

By:

Jin, Seung-Gi;
Wu, Xiwei;
Li, Arthur X.;
Pfeifer, Gerd P.

Publication type:

Article

Characterization of PvuRts1I endonuclease as a tool to investigate genomic 5–hydroxymethylcytosine.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 12, p. 5149, doi. 10.1093/nar/gkr118

By:

Szwagierczak, Aleksandra;
Brachmann, Andreas;
Schmidt, Christine S.;
Bultmann, Sebastian;
Leonhardt, Heinrich;
Spada, Fabio

Publication type:

Article