Works matching IS 03051048 AND DT 2011 AND VI 39 AND IP 11

Results: 39

A cytoplasm-specific activity encoded by the Trithorax-like ATX1 gene.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 11, p. 4709, doi. 10.1093/nar/gkq1300

By:

Ndamukong, Ivan;
Lapko, Hanna;
Cerny, Ronald L.;
Avramova, Zoya

Publication type:

Article

Correction of PCR-bias in quantitative DNA methylation studies by means of cubic polynomial regression.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 11, p. e77, doi. 10.1093/nar/gkr213

By:

Moskalev, Evgeny A.;
Zavgorodnij, Mikhail G.;
Majorova, Svetlana P.;
Vorobjev, Ivan A.;
Jandaghi, Pouria;
Bure, Irina V.;
Hoheisel, Jörg D.

Publication type:

Article

The BCL2 gene is regulated by a special AT-rich sequence binding protein 1-mediated long range chromosomal interaction between the promoter and the distal element located within the 3′-UTR.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 11, p. 4640, doi. 10.1093/nar/gkr023

By:

Gong, Feiran;
Sun, Luan;
Wang, Zongdan;
Shi, Junfeng;
Li, Wei;
Wang, Sumeng;
Han, Xiao;
Sun, Yujie

Publication type:

Article

Association between translation efficiency and horizontal gene transfer within microbial communities.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 11, p. 4743, doi. 10.1093/nar/gkr054

By:

Tuller, Tamir;
Girshovich, Yana;
Sella, Yael;
Kreimer, Avi;
Freilich, Shiri;
Kupiec, Martin;
Gophna, Uri;
Ruppin, Eytan

Publication type:

Article

ROS-DET: robust detector of switching mechanisms in gene expression.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 11, p. e74, doi. 10.1093/nar/gkr130

By:

Kayano, Mitsunori;
Takigawa, Ichigaku;
Shiga, Motoki;
Tsuda, Koji;
Mamitsuka, Hiroshi

Publication type:

Article

Subscriptions.

Published in:: Nucleic Acids Research, 2011, v. 39, n. 11, p. iii, doi. 10.1093/nar/gkr520
Publication type:: Article

Antisense RNA protects mRNA from RNase E degradation by RNA–RNA duplex formation during phage infection.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 11, p. 4890, doi. 10.1093/nar/gkr037

By:

Stazic, Damir;
Lindell, Debbie;
Steglich, Claudia

Publication type:

Article

Strand bias influences the mechanism of gene editing directed by single-stranded DNA oligonucleotides.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 11, p. 4783, doi. 10.1093/nar/gkr061

By:

Falgowski, Kerry;
Falgowski, Carly;
York-Vickers, Cassie;
Kmiec, Eric B.

Publication type:

Article

Retinoic acid-related orphan receptor γ directly regulates neuronal PAS domain protein 2 transcription in vivo.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 11, p. 4769, doi. 10.1093/nar/gkq1335

By:

Takeda, Yukimasa;
Kang, Hong Soon;
Angers, Martin;
Jetten, Anton M.

Publication type:

Article

Integrated genome-wide chromatin occupancy and expression analyses identify key myeloid pro-differentiation transcription factors repressed by Myb.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 11, p. 4664, doi. 10.1093/nar/gkr024

By:

Zhao, Liang;
Glazov, Evgeny A.;
Pattabiraman, Diwakar R.;
Al-Owaidi, Faisal;
Zhang, Ping;
Brown, Matthew A.;
Leo, Paul J.;
Gonda, Thomas J.

Publication type:

Article

Predicting promoter activities of primary human DNA sequences.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 11, p. e75, doi. 10.1093/nar/gkr173

By:

Irie, Takuma;
Park, Sung-Joon;
Yamashita, Riu;
Seki, Masahide;
Yada, Tetsushi;
Sugano, Sumio;
Nakai, Kenta;
Suzuki, Yutaka

Publication type:

Article

A role for the arginine methylation of Rad9 in checkpoint control and cellular sensitivity to DNA damage.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 11, p. 4719, doi. 10.1093/nar/gkq1264

By:

He, Wei;
Ma, Xiaoyan;
Yang, Xiao;
Zhao, Yun;
Qiu, Junkang;
Hang, Haiying

Publication type:

Article

Comparative whole genome sequencing reveals phenotypic tRNA gene duplication in spontaneous Schizosaccharomyces pombe La mutants.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 11, p. 4728, doi. 10.1093/nar/gkr066

By:

Iben, James R.;
Epstein, Jonathan A.;
Bayfield, Mark A.;
Bruinsma, Monique W.;
Hasson, Samuel;
Bacikova, Dagmar;
Ahmad, Daniel;
Rockwell, Denise;
Kittler, Ellen L. W.;
Zapp, Maria L.;
Maraia, Richard J.

Publication type:

Article

Mechanisms of single-stranded phosphorothioate modified antisense oligonucleotide accumulation in hepatocytes.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 11, p. 4795, doi. 10.1093/nar/gkr089

By:

Koller, Erich;
Vincent, Thomas M.;
Chappell, Alfred;
De, Soma;
Manoharan, Muthiah;
Bennett, C. Frank

Publication type:

Article

An unusual tRNAThr derived from tRNAHis reassigns in yeast mitochondria the CUN codons to threonine.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 11, p. 4866, doi. 10.1093/nar/gkr073

By:

Su, Dan;
Lieberman, Allyson;
Lang, B. Franz;
Simonović, Miljan;
Söll, Dieter;
Ling, Jiqiang

Publication type:

Article

DNA translocation by type III restriction enzymes: a comparison of current models of their operation derived from ensemble and single-molecule measurements.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 11, p. 4525, doi. 10.1093/nar/gkq1285

By:

Dryden, David T. F.;
Edwardson, J. M.;
Henderson, Robert M.

Publication type:

Article

Finding subtypes of transcription factor motif pairs with distinct regulatory roles.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 11, p. e76, doi. 10.1093/nar/gkr205

By:

Bais, Abha Singh;
Kaminski, Naftali;
Benos, Panayiotis V.

Publication type:

Article

Regulation of gene expression in restriction-modification system Eco29kI.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 11, p. 4653, doi. 10.1093/nar/gkr055

By:

Nagornykh, Maxim;
Zakharova, Marina;
Protsenko, Alexey;
Bogdanova, Ekaterina;
Solonin, Alexander S.;
Severinov, Konstantin

Publication type:

Article

Rapid changes in gene expression: DNA determinants of promoter regulation by the concentration of the transcription initiating NTP in Bacillus subtilis.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 11, p. 4598, doi. 10.1093/nar/gkr032

By:

Sojka, Luděk;
Kouba, Tomáš;
Barvík, Ivan;
Šanderová, Hana;
Maderová, Zdeňka;
Jonák, Jiří;
Krásný, Libor

Publication type:

Article

Use of divalent metal ions in the DNA cleavage reaction of topoisomerase IV.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 11, p. 4808, doi. 10.1093/nar/gkr018

By:

Pitts, Steven L.;
Liou, Grace F.;
Mitchenall, Lesley A.;
Burgin, Alex B.;
Maxwell, Anthony;
Neuman, Keir C.;
Osheroff, Neil

Publication type:

Article

Distant positioning of proteasomal proteolysis relative to actively transcribed genes.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 11, p. 4612, doi. 10.1093/nar/gkr069

By:

Scharf, Andrea;
Grozdanov, Petar N.;
Veith, Roman;
Kubitscheck, Ulrich;
Meier, U. Thomas;
von Mikecz, Anna

Publication type:

Article

A novel immunity system for bacterial nucleic acid degrading toxins and its recruitment in various eukaryotic and DNA viral systems.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 11, p. 4532, doi. 10.1093/nar/gkr036

By:

Zhang, Dapeng;
Iyer, Lakshminarayan M.;
Aravind, L.

Publication type:

Article

Using a structural and logics systems approach to infer bHLH–DNA binding specificity determinants.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 11, p. 4553, doi. 10.1093/nar/gkr070

By:

De Masi, Federico;
Grove, Christian A.;
Vedenko, Anastasia;
Alibés, Andreu;
Gisselbrecht, Stephen S.;
Serrano, Luis;
Bulyk, Martha L.;
Walhout, Albertha J. M.

Publication type:

Article

A highly conserved protein of unknown function in Sinorhizobium meliloti affects sRNA regulation similar to Hfq.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 11, p. 4691, doi. 10.1093/nar/gkr060

By:

Pandey, Shree P.;
Minesinger, Brenda K.;
Kumar, Janesh;
Walker, Graham C.

Publication type:

Article

The conformation of microRNA seed regions in native microRNPs is prearranged for presentation to mRNA targets.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 11, p. 4827, doi. 10.1093/nar/gkr077

By:

Lambert, Nicole J.;
Gu, Sam G.;
Zahler, Alan M.

Publication type:

Article

Extensive protein and DNA backbone sampling improves structure-based specificity prediction for C2H2 zinc fingers.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 11, p. 4564, doi. 10.1093/nar/gkr048

By:

Yanover, Chen;
Bradley, Philip

Publication type:

Article

Human imprinted retrogenes exhibit non-canonical imprint chromatin signatures and reside in non-imprinted host genes.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 11, p. 4577, doi. 10.1093/nar/gkq1230

By:

Monk, David;
Arnaud, Philippe;
Frost, Jennifer M.;
Wood, Andrew J.;
Cowley, Michael;
Martin-Trujillo, Alejandro;
Guillaumet-Adkins, Amy;
Iglesias Platas, Isabel;
Camprubi, Cristina;
Bourc’his, Deborah;
Feil, Robert;
Moore, Gudrun E.;
Oakey, Rebecca J.

Publication type:

Article

Sequence specificity is obtained from the majority of modular C2H2 zinc-finger arrays.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 11, p. 4680, doi. 10.1093/nar/gkq1303

By:

Lam, Kathy N.;
van Bakel, Harm;
Cote, Atina G.;
van der Ven, Anton;
Hughes, Timothy R.

Publication type:

Article

Depletion of key protein components of the RISC pathway impairs pre-ribosomal RNA processing.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 11, p. 4875, doi. 10.1093/nar/gkr076

By:

Liang, Xue-hai;
Crooke, Stanley T.

Publication type:

Article

A random mutation capture assay to detect genomic point mutations in mouse tissue.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 11, p. e73, doi. 10.1093/nar/gkr142

By:

Wright, Jocelyn H.;
Modjeski, Kristina L.;
Bielas, Jason H.;
Preston, Bradley D.;
Fausto, Nelson;
Loeb, Lawrence A.;
Campbell, Jean S.

Publication type:

Article

Assay of both activities of the bifunctional tRNA-modifying enzyme MnmC reveals a kinetic basis for selective full modification of cmnm5s2U to mnm5s2U.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 11, p. 4818, doi. 10.1093/nar/gkr071

By:

Pearson, David;
Carell, Thomas

Publication type:

Article

A method to sequence and quantify DNA integration for monitoring outcome in gene therapy.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 11, p. e72, doi. 10.1093/nar/gkr140

By:

Brady, Troy;
Roth, Shoshannah L.;
Malani, Nirav;
Wang, Gary P.;
Berry, Charles C.;
Leboulch, Philippe;
Hacein-Bey-Abina, Salima;
Cavazzana-Calvo, Marina;
Papapetrou, Eirini P.;
Sadelain, Michel;
Savilahti, Harri;
Bushman, Frederic D.

Publication type:

Article

Nucleic Acids Research.

Published in:: Nucleic Acids Research, 2011, v. 39, n. 11, p. ii, doi. 10.1093/nar/gkr518
Publication type:: Article

Common conformational changes induced in type 2 picornavirus IRESs by cognate trans-acting factors.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 11, p. 4851

By:

Yu, Yingpu;
Abaeva, Irina S.;
Marintchev, Assen;
Pestova, Tatyana V.;
Hellen, Christopher U. T.

Publication type:

Article

Structural insights into the dynamics and function of the C-terminus of the E. coli RNA chaperone Hfq.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 11, p. 4900, doi. 10.1093/nar/gkq1346

By:

Beich-Frandsen, Mads;
Večerek, Branislav;
Konarev, Petr V.;
Sjöblom, Björn;
Kloiber, Karin;
Hämmerle, Hermann;
Rajkowitsch, Lukas;
Miles, Andrew J.;
Kontaxis, Georg;
Wallace, B. A.;
Svergun, Dimitri I.;
Konrat, Robert;
Bläsi, Udo;
Djinović-Carugo, Kristina

Publication type:

Article

2′-O-ribose methylation of cap2 in human: function and evolution in a horizontally mobile family.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 11, p. 4756, doi. 10.1093/nar/gkr038

By:

Werner, Maria;
Purta, Elżbieta;
Kaminska, Katarzyna H.;
Cymerman, Iwona A.;
Campbell, David A.;
Mittra, Bidyottam;
Zamudio, Jesse R.;
Sturm, Nancy R.;
Jaworski, Jacek;
Bujnicki, Janusz M.

Publication type:

Article

Thermodynamic and kinetic basis for recognition and repair of 8-oxoguanine in DNA by human 8-oxoguanine-DNA glycosylase.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 11, p. 4836, doi. 10.1093/nar/gkq1333

By:

Kirpota, Oleg O.;
Endutkin, Anton V.;
Ponomarenko, Michail P.;
Ponomarenko, Petr M.;
Zharkov, Dmitry O.;
Nevinsky, Georgy A.

Publication type:

Article

Translational recoding as a feedback controller: systems approaches reveal polyamine-specific effects on the antizyme ribosomal frameshift.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 11, p. 4587, doi. 10.1093/nar/gkq1349

By:

Rato, Claudia;
Amirova, Svetlana R.;
Bates, Declan G.;
Stansfield, Ian;
Wallace, Heather M.

Publication type:

Article

Genome-wide chromatin occupancy analysis reveals a role for ASH2 in transcriptional pausing.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 11, p. 4628, doi. 10.1093/nar/gkq1322

By:

Pérez-Lluch, Sílvia;
Blanco, Enrique;
Carbonell, Albert;
Raha, Debasish;
Snyder, Michael;
Serras, Florenci;
Corominas, Montserrat

Publication type:

Article