Works matching IS 03051048 AND DT 2011 AND VI 39 AND IP 10

Results: 51

Biophysical analysis and small-angle X-ray scattering-derived structures of MeCP2–nucleosome complexes.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 10, p. 4122, doi. 10.1093/nar/gkr005

By:

Yang, Chenghua;
van der Woerd, Mark J.;
Muthurajan, Uma M.;
Hansen, Jeffrey C.;
Luger, Karolin

Publication type:

Article

Comprehensive computational design of mCreI homing endonuclease cleavage specificity for genome engineering.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 10, p. 4330, doi. 10.1093/nar/gkr022

By:

Ulge, Umut Y.;
Baker, David A.;
Monnat, Raymond J.

Publication type:

Article

Structure of p300 bound to MEF2 on DNA reveals a mechanism of enhanceosome assembly.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 10, p. 4464, doi. 10.1093/nar/gkr030

By:

He, Ju;
Ye, Jun;
Cai, Yongfei;
Riquelme, Cecilia;
Liu, Jun O.;
Liu, Xuedong;
Han, Aidong;
Chen, Lin

Publication type:

Article

Two forms of ribosomal protein L2 of Escherichia coli that inhibit DnaA in DNA replication.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 10, p. 4180, doi. 10.1093/nar/gkq1203

By:

Chodavarapu, Sundari;
Felczak, Magdalena M.;
Kaguni, Jon M.

Publication type:

Article

Not1 mediates recruitment of the deadenylase Caf1 to mRNAs targeted for degradation by tristetraprolin.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 10, p. 4373, doi. 10.1093/nar/gkr011

By:

Sandler, Heike;
Kreth, Jochen;
Timmers, H. Th. Marc;
Stoecklin, Georg

Publication type:

Article

Controlled interplay between trigger loop and Gre factor in the RNA polymerase active centre.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 10, p. 4352, doi. 10.1093/nar/gkq1359

By:

Roghanian, Mohammad;
Yuzenkova, Yulia;
Zenkin, Nikolay

Publication type:

Article

PDGF induced microRNA alterations in cancer cells.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 10, p. 4035, doi. 10.1093/nar/gkq1305

By:

Shao, Minghai;
Rossi, Simona;
Chelladurai, Bhadrani;
Shimizu, Masayoshi;
Ntukogu, Obiageli;
Ivan, Mircea;
Calin, George A.;
Matei, Daniela

Publication type:

Article

Real-time detection of cruciform extrusion by single-molecule DNA nanomanipulation.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 10, p. 4275, doi. 10.1093/nar/gkr008

By:

Ramreddy, T.;
Sachidanandam, R.;
Strick, T. R.

Publication type:

Article

A novel mechanism for target gene-specific SWI/SNF recruitment via the Snf2p N-terminus.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 10, p. 4088, doi. 10.1093/nar/gkr004

By:

Weider, M.;
Schröder, A.;
Klebl, F.;
Sauer, N.

Publication type:

Article

Yeast H2A.Z, FACT complex and RSC regulate transcription of tRNA gene through differential dynamics of flanking nucleosomes.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 10, p. 4023, doi. 10.1093/nar/gkq1286

By:

Mahapatra, Sahasransu;
Dewari, Pooran S.;
Bhardwaj, Anubhav;
Bhargava, Purnima

Publication type:

Article

Functional specialization of Piwi proteins in Paramecium tetraurelia from post-transcriptional gene silencing to genome remodelling.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 10, p. 4249, doi. 10.1093/nar/gkq1283

By:

Bouhouche, Khaled;
Gout, Jean-François;
Kapusta, Aurélie;
Bétermier, Mireille;
Meyer, Eric

Publication type:

Article

NMR structure of the A730 loop of the Neurospora VS ribozyme: insights into the formation of the active site.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 10, p. 4427, doi. 10.1093/nar/gkq1244

By:

Desjardins, Geneviève;
Bonneau, Eric;
Girard, Nicolas;
Boisbouvier, Jérôme;
Legault, Pascale

Publication type:

Article

Combinatorial chromatin modification patterns in the human genome revealed by subspace clustering.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 10, p. 4063, doi. 10.1093/nar/gkr016

By:

Ucar, Duygu;
Hu, Qingyang;
Tan, Kai

Publication type:

Article

TEFM (c17orf42) is necessary for transcription of human mtDNA.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 10, p. 4284, doi. 10.1093/nar/gkq1224

By:

Minczuk, Michal;
He, Jiuya;
Duch, Anna M.;
Ettema, Thijs J.;
Chlebowski, Aleksander;
Dzionek, Karol;
Nijtmans, Leo G. J.;
Huynen, Martijn A.;
Holt, Ian J.

Publication type:

Article

AG-dependent 3′-splice sites are predisposed to aberrant splicing due to a mutation at the first nucleotide of an exon.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 10, p. 4396, doi. 10.1093/nar/gkr026

By:

Fu, Yuan;
Masuda, Akio;
Ito, Mikako;
Shinmi, Jun;
Ohno, Kinji

Publication type:

Article

The RNA annealing mechanism of the HIV-1 Tat peptide: conversion of the RNA into an annealing-competent conformation.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 10, p. 4405, doi. 10.1093/nar/gkq1339

By:

Doetsch, Martina;
Fürtig, Boris;
Gstrein, Thomas;
Stampfl, Sabine;
Schroeder, Renée

Publication type:

Article

Effects of HMGN variants on the cellular transcription profile.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 10, p. 4076, doi. 10.1093/nar/gkq1343

By:

Rochman, Mark;
Taher, Leila;
Kurahashi, Toshihiro;
Cherukuri, Srujana;
Uversky, Vladimir N.;
Landsman, David;
Ovcharenko, Ivan;
Bustin, Michael

Publication type:

Article

ModeRNA: a tool for comparative modeling of RNA 3D structure.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 10, p. 4007, doi. 10.1093/nar/gkq1320

By:

Rother, Magdalena;
Rother, Kristian;
Puton, Tomasz;
Bujnicki, Janusz M.

Publication type:

Article

Uracils at nucleotide position 9–11 are required for the rapid turnover of miR-29 family.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 10, p. 4387, doi. 10.1093/nar/gkr020

By:

Zhang, Zhuo;
Zou, Jun;
Wang, Guo-Kun;
Zhang, Jun-Tao;
Huang, Shuang;
Qin, Yong-Wen;
Jing, Qing

Publication type:

Article

The intracellular sRNA transcriptome of Listeria monocytogenes during growth in macrophages.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 10, p. 4235, doi. 10.1093/nar/gkr033

By:

Mraheil, Mobarak A.;
Billion, André;
Mohamed, Walid;
Mukherjee, Krishnendu;
Kuenne, Carsten;
Pischimarov, Jordan;
Krawitz, Christian;
Retey, Julia;
Hartsch, Thomas;
Chakraborty, Trinad;
Hain, Torsten

Publication type:

Article

Multiplex cDNA quantification method that facilitates the standardization of gene expression data.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 10, p. e70, doi. 10.1093/nar/gkr138

By:

Gotoh, Osamu;
Murakami, Yasufumi;
Suyama, Akira

Publication type:

Article

U1 adaptors result in reduction of multiple pre-mRNA species principally by sequestering U1snRNP.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 10, p. e71, doi. 10.1093/nar/gkr150

By:

Vickers, Timothy A.;
Sabripour, Mahyar;
Crooke, Stanley T.

Publication type:

Article

Differential RNA-binding activity of the hnRNP G protein correlated with the sex genotype in the amphibian oocyte.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 10, p. 4109, doi. 10.1093/nar/gkq1315

By:

Kanhoush, Rasha;
Praseuth, Danièle;
Perrin, Caroline;
Chardard, Dominique;
Vinh, Joëlle;
Penrad-Mobayed, May

Publication type:

Article

Nucleic Acids Research.

Published in:: Nucleic Acids Research, 2011, v. 39, n. 10, p. i, doi. 10.1093/nar/gkr471
Publication type:: Article

Genome-wide quantitative assessment of variation in DNA methylation patterns.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 10, p. 4099, doi. 10.1093/nar/gkr017

By:

Xie, Hehuang;
Wang, Min;
de Andrade, Alexandre;
Bonaldo, Maria de F.;
Galat, Vasil;
Arndt, Kelly;
Rajaram, Veena;
Goldman, Stewart;
Tomita, Tadanori;
Soares, Marcelo B.

Publication type:

Article

The MobM relaxase domain of plasmid pMV158: thermal stability and activity upon Mn2+ and specific DNA binding.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 10, p. 4315, doi. 10.1093/nar/gkr049

By:

Lorenzo-Díaz, Fabián;
Dostál, Lubomir;
Coll, Miquel;
Schildbach, Joel F.;
Menéndez, Margarita;
Espinosa, Manuel

Publication type:

Article

Probing RNA dynamics via longitudinal exchange and CPMG relaxation dispersion NMR spectroscopy using a sensitive 13C-methyl label.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 10, p. 4340, doi. 10.1093/nar/gkq1361

By:

Kloiber, Karin;
Spitzer, Romana;
Tollinger, Martin;
Konrat, Robert;
Kreutz, Christoph

Publication type:

Article

A highly selective, label-free, homogenous luminescent switch-on probe for the detection of nanomolar transcription factor NF-kappaB.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 10, p. e67

By:

Ma, Dik-Lung;
Xu, Ting;
Chan, Daniel S.-H.;
Man, Bradley Y.-W.;
Fong, Wang-Fun;
Leung, Chung-Hang

Publication type:

Article

Homolog-specific PCR primer design for profiling splice variants.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 10, p. e69, doi. 10.1093/nar/gkr127

By:

Srivastava, Gyan Prakash;
Hanumappa, Mamatha;
Kushwaha, Garima;
Nguyen, Henry T.;
Xu, Dong

Publication type:

Article

TreeKO: a duplication-aware algorithm for the comparison of phylogenetic trees.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 10, p. e66, doi. 10.1093/nar/gkr087

By:

Marcet-Houben, Marina;
Gabaldón, Toni

Publication type:

Article

The histone H3K36 demethylase Rph1/KDM4 regulates the expression of the photoreactivation gene PHR1.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 10, p. 4151, doi. 10.1093/nar/gkr040

By:

Liang, Chung-Yi;
Hsu, Pang-Hung;
Chou, Dai-Fang;
Pan, Chao-Yu;
Wang, Long-Chi;
Huang, Wei-Chieh;
Tsai, Ming-Daw;
Lo, Wan-Sheng

Publication type:

Article

Subscriptions.

Published in:: Nucleic Acids Research, 2011, v. 39, n. 10, p. iii, doi. 10.1093/nar/gkr473
Publication type:: Article

SyMAP v3.4: a turnkey synteny system with application to plant genomes.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 10, p. e68, doi. 10.1093/nar/gkr123

By:

Soderlund, Carol;
Bomhoff, Matthew;
Nelson, William M.

Publication type:

Article

Use of RecA fusion proteins to induce genomic modifications in zebrafish.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 10, p. 4166, doi. 10.1093/nar/gkq1363

By:

Liao, Hsin-Kai;
Essner, Jeffrey J.

Publication type:

Article

Hmo1 directs pre-initiation complex assembly to an appropriate site on its target gene promoters by masking a nucleosome-free region.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 10, p. 4136, doi. 10.1093/nar/gkq1334

By:

Kasahara, Koji;
Ohyama, Yoshifumi;
Kokubo, Tetsuro

Publication type:

Article

Characterization of photophysical and base-mimicking properties of a novel fluorescent adenine analogue in DNA.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 10, p. 4513, doi. 10.1093/nar/gkr010

By:

Dierckx, Anke;
Dinér, Peter;
El-Sagheer, Afaf H.;
Kumar, Joshi Dhruval;
Brown, Tom;
Grøtli, Morten;
Wilhelmsson, L. Marcus

Publication type:

Article

Evolution of linear chromosomes and multipartite genomes in yeast mitochondria.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 10, p. 4202, doi. 10.1093/nar/gkq1345

By:

Valach, Matus;
Farkas, Zoltan;
Fricova, Dominika;
Kovac, Jakub;
Brejova, Brona;
Vinar, Tomas;
Pfeiffer, Ilona;
Kucsera, Judit;
Tomaska, Lubomir;
Lang, B. Franz;
Nosek, Jozef

Publication type:

Article

NSrp70 is a novel nuclear speckle-related protein that modulates alternative pre-mRNA splicing in vivo.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 10, p. 4300, doi. 10.1093/nar/gkq1267

By:

Kim, Young-Dae;
Lee, Jung-Yoon;
Oh, Kyu-Man;
Araki, Masatake;
Araki, Kimi;
Yamamura, Ken-ichi;
Jun, Chang-Duk

Publication type:

Article

WDHD1 modulates the post-transcriptional step of the centromeric silencing pathway.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 10, p. 4048, doi. 10.1093/nar/gkq1338

By:

Hsieh, Chia-Ling;
Lin, Chih-Li;
Liu, Hsuan;
Chang, Yao-Jen;
Shih, Chii-Jiun;
Zhong, Chang Zheng;
Lee, Sheng-Chung;
Tan, Bertrand Chin-Ming

Publication type:

Article

Induced topological changes in DNA complexes: influence of DNA sequences and small molecule structures.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 10, p. 4265, doi. 10.1093/nar/gkq1362

By:

Hunt, Rebecca A.;
Munde, Manoj;
Kumar, Arvind;
Ismail, Mohamed A.;
Farahat, Abdelbasset A.;
Arafa, Reem K.;
Say, Martial;
Batista-Parra, Adalgisa;
Tevis, Denise;
Boykin, David W.;
Wilson, W. David

Publication type:

Article

Escherichia coli YafP protein modulates DNA damaging property of the nitroaromatic compounds.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 10, p. 4192, doi. 10.1093/nar/gkr050

By:

Gutierrez, Arnaud;
Elez, Marina;
Clermont, Olivier;
Denamur, Erick;
Matic, Ivan

Publication type:

Article

Crystal structure of a DNA containing the planar, phenoxazine-derived bi-functional spectroscopic probe Ç.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 10, p. 4419, doi. 10.1093/nar/gkr015

By:

Edwards, Thomas E.;
Cekan, Pavol;
Reginsson, Gunnar W.;
Shelke, Sandip A.;
Ferré-D’Amaré, Adrian R.;
Schiemann, Olav;
Sigurdsson, Snorri Th.

Publication type:

Article

Prevention of cross-talk in conserved regulatory systems: identification of specificity determinants in RNA-binding anti-termination proteins of the BglG family.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 10, p. 4360, doi. 10.1093/nar/gkr021

By:

Hübner, Sebastian;
Declerck, Nathalie;
Diethmaier, Christine;
Le Coq, Dominique;
Aymerich, Stephane;
Stülke, Jörg

Publication type:

Article

Identification of evolutionarily conserved non-AUG-initiated N-terminal extensions in human coding sequences.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 10, p. 4220, doi. 10.1093/nar/gkr007

By:

Ivanov, Ivaylo P.;
Firth, Andrew E.;
Michel, Audrey M.;
Atkins, John F.;
Baranov, Pavel V.

Publication type:

Article

Explaining the varied glycosidic conformational, G-tract length and sequence preferences for anti-parallel G-quadruplexes.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 10, p. 4499, doi. 10.1093/nar/gkr031

By:

Cang, Xiaohui;
Šponer, Jiří;
Cheatham, Thomas E.

Publication type:

Article

Structural and biochemical studies of human lysine methyltransferase Smyd3 reveal the important functional roles of its post-SET and TPR domains and the regulation of its activity by DNA binding.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 10, p. 4438, doi. 10.1093/nar/gkr019

By:

Xu, Shutong;
Wu, Jian;
Sun, Bingfa;
Zhong, Chen;
Ding, Jianping

Publication type:

Article

Zn2+ selectively stabilizes FdU-substituted DNA through a unique major groove binding motif.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 10, p. 4490, doi. 10.1093/nar/gkr029

By:

Ghosh, Supratim;
Salsbury, Freddie R.;
Horita, David A.;
Gmeiner, William H.

Publication type:

Article

Cyclodipeptide synthases, a family of class-I aminoacyl-tRNA synthetase-like enzymes involved in non-ribosomal peptide synthesis.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 10, p. 4475, doi. 10.1093/nar/gkr027

By:

Sauguet, Ludovic;
Moutiez, Mireille;
Li, Yan;
Belin, Pascal;
Seguin, Jérôme;
Le Du, Marie-Hélène;
Thai, Robert;
Masson, Cédric;
Fonvielle, Matthieu;
Pernodet, Jean-Luc;
Charbonnier, Jean-Baptiste;
Gondry, Muriel

Publication type:

Article

Adenovirus vector-mediated assay system for hepatitis C virus replication.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 10, p. e64, doi. 10.1093/nar/gkr047

By:

Yoshida, Takeshi;
Kondoh, Masuo;
Ojima, Manabu;
Mizuguchi, Hiroyuki;
Yamagishi, Yoshiaki;
Sakamoto, Naoya;
Yagi, Kiyohito

Publication type:

Article

Mapping interactions between the RNA chaperone FinO and its RNA targets.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 10, p. 4450, doi. 10.1093/nar/gkr025

By:

Arthur, David C.;
Edwards, Ross A.;
Tsutakawa, Susan;
Tainer, John A.;
Frost, Laura S.;
Glover, J. N. Mark

Publication type:

Article