Works matching IS 03051048 AND DT 2010 AND VI 38 AND IP suppl_2

Results: 127

Nucleic Acids Research.

Published in:: Nucleic Acids Research, 2010, v. 38, n. suppl_2, p. ii, doi. 10.1093/nar/gkp1211
Publication type:: Article

deconSTRUCT: general purpose protein database search on the substructure level.

Published in:

Nucleic Acids Research, 2010, v. 38, n. suppl_2, p. W590, doi. 10.1093/nar/gkq489

By:

Zhang, Zong Hong;
Bharatham, Kavitha;
Sherman, Westley A.;
Mihalek, Ivana

Publication type:

Article

PathPred: an enzyme-catalyzed metabolic pathway prediction server.

Published in:

Nucleic Acids Research, 2010, v. 38, n. suppl_2, p. W138, doi. 10.1093/nar/gkq318

By:

Moriya, Yuki;
Shigemizu, Daichi;
Hattori, Masahiro;
Tokimatsu, Toshiaki;
Kotera, Masaaki;
Goto, Susumu;
Kanehisa, Minoru

Publication type:

Article

mirTools: microRNA profiling and discovery based on high-throughput sequencing.

Published in:

Nucleic Acids Research, 2010, v. 38, n. suppl_2, p. W392, doi. 10.1093/nar/gkq393

By:

Zhu, Erle;
Zhao, Fangqing;
Xu, Gang;
Hou, Huabin;
Zhou, LingLin;
Li, Xiaokun;
Sun, Zhongsheng;
Wu, Jinyu

Publication type:

Article

CPHmodels-3.0—remote homology modeling using structure-guided sequence profiles.

Published in:

Nucleic Acids Research, 2010, v. 38, n. suppl_2, p. W576, doi. 10.1093/nar/gkq535

By:

Nielsen, Morten;
Lundegaard, Claus;
Lund, Ole;
Petersen, Thomas Nordahl

Publication type:

Article

PharmMapper server: a web server for potential drug target identification using pharmacophore mapping approach.

Published in:

Nucleic Acids Research, 2010, v. 38, n. suppl_2, p. W609, doi. 10.1093/nar/gkq300

By:

Liu, Xiaofeng;
Ouyang, Sisheng;
Yu, Biao;
Liu, Yabo;
Huang, Kai;
Gong, Jiayu;
Zheng, Siyuan;
Li, Zhihua;
Li, Honglin;
Jiang, Hualiang

Publication type:

Article

RJPrimers: unique transposable element insertion junction discovery and PCR primer design for marker development.

Published in:

Nucleic Acids Research, 2010, v. 38, n. suppl_2, p. W313, doi. 10.1093/nar/gkq425

By:

You, Frank M.;
Wanjugi, Humphrey;
Huo, Naxin;
Lazo, Gerard R.;
Luo, Ming-Cheng;
Anderson, Olin D.;
Dvorak, Jan;
Gu, Yong Q.

Publication type:

Article

NAPS: a residue-level nucleic acid-binding prediction server.

Published in:

Nucleic Acids Research, 2010, v. 38, n. suppl_2, p. W431, doi. 10.1093/nar/gkq361

By:

Carson, Matthew B.;
Langlois, Robert;
Lu, Hui

Publication type:

Article

Targetfinder.org: a resource for systematic discovery of transcription factor target genes.

Published in:

Nucleic Acids Research, 2010, v. 38, n. suppl_2, p. W233, doi. 10.1093/nar/gkq374

By:

Kiełbasa, Szymon M.;
Blüthgen, Nils;
Fähling, Michael;
Mrowka, Ralf

Publication type:

Article

TFM-Explorer: mining cis-regulatory regions in genomes.

Published in:

Nucleic Acids Research, 2010, v. 38, n. suppl_2, p. W286, doi. 10.1093/nar/gkq473

By:

Tonon, Laurie;
Touzet, Hélène;
Varré, Jean-Stéphane

Publication type:

Article

Babelomics: an integrative platform for the analysis of transcriptomics, proteomics and genomic data with advanced functional profiling.

Published in:

Nucleic Acids Research, 2010, v. 38, n. suppl_2, p. W210, doi. 10.1093/nar/gkq388

By:

Medina, Ignacio;
Carbonell, José;
Pulido, Luis;
Madeira, Sara C.;
Goetz, Stefan;
Conesa, Ana;
Tárraga, Joaquín;
Pascual-Montano, Alberto;
Nogales-Cadenas, Ruben;
Santoyo, Javier;
García, Francisco;
Marbà, Martina;
Montaner, David;
Dopazo, Joaquín

Publication type:

Article

Editorial.

Published in:

Nucleic Acids Research, 2010, v. 38, n. suppl_2, p. W1, doi. 10.1093/nar/gkq562

By:

Benson, Gary

Publication type:

Article

The Ontology Lookup Service: bigger and better.

Published in:

Nucleic Acids Research, 2010, v. 38, n. suppl_2, p. W155, doi. 10.1093/nar/gkq331

By:

Côté, Richard;
Reisinger, Florian;
Martens, Lennart;
Barsnes, Harald;
Vizcaino, Juan Antonio;
Hermjakob, Henning

Publication type:

Article

HotPoint: hot spot prediction server for protein interfaces.

Published in:

Nucleic Acids Research, 2010, v. 38, n. suppl_2, p. W402, doi. 10.1093/nar/gkq323

By:

Tuncbag, Nurcan;
Keskin, Ozlem;
Gursoy, Attila

Publication type:

Article

ALTER: program-oriented conversion of DNA and protein alignments.

Published in:

Nucleic Acids Research, 2010, v. 38, n. suppl_2, p. W14, doi. 10.1093/nar/gkq321

By:

Glez-Peña, Daniel;
Gómez-Blanco, Daniel;
Reboiro-Jato, Miguel;
Fdez-Riverola, Florentino;
Posada, David

Publication type:

Article

3V: cavity, channel and cleft volume calculator and extractor.

Published in:

Nucleic Acids Research, 2010, v. 38, n. suppl_2, p. W555, doi. 10.1093/nar/gkq395

By:

Voss, Neil R.;
Gerstein, Mark

Publication type:

Article

ProBiS: a web server for detection of structurally similar protein binding sites.

Published in:

Nucleic Acids Research, 2010, v. 38, n. suppl_2, p. W436, doi. 10.1093/nar/gkq479

By:

Konc, Janez;
Janežič, Dušanka

Publication type:

Article

VISIBIOweb: visualization and layout services for BioPAX pathway models.

Published in:

Nucleic Acids Research, 2010, v. 38, n. suppl_2, p. W150, doi. 10.1093/nar/gkq352

By:

Dilek, Alptug;
Belviranli, Mehmet E.;
Dogrusoz, Ugur

Publication type:

Article

chipD: a web tool to design oligonucleotide probes for high-density tiling arrays.

Published in:

Nucleic Acids Research, 2010, v. 38, n. suppl_2, p. W321, doi. 10.1093/nar/gkq517

By:

Dufour, Yann S.;
Wesenberg, Gary E.;
Tritt, Andrew J.;
Glasner, Jeremy D.;
Perna, Nicole T.;
Mitchell, Julie C.;
Donohue, Timothy J.

Publication type:

Article

Phyloscan: locating transcription-regulating binding sites in mixed aligned and unaligned sequence data.

Published in:

Nucleic Acids Research, 2010, v. 38, n. suppl_2, p. W268, doi. 10.1093/nar/gkq330

By:

Palumbo, Michael J.;
Newberg, Lee A.

Publication type:

Article

myExperiment: a repository and social network for the sharing of bioinformatics workflows.

Published in:

Nucleic Acids Research, 2010, v. 38, n. suppl_2, p. W677, doi. 10.1093/nar/gkq429

By:

Goble, Carole A.;
Bhagat, Jiten;
Aleksejevs, Sergejs;
Cruickshank, Don;
Michaelides, Danius;
Newman, David;
Borkum, Mark;
Bechhofer, Sean;
Roos, Marco;
Li, Peter;
De Roure, David

Publication type:

Article

SOBA: sequence ontology bioinformatics analysis.

Published in:

Nucleic Acids Research, 2010, v. 38, n. suppl_2, p. W161, doi. 10.1093/nar/gkq426

By:

Moore, Barry;
Fan, Guozhen;
Eilbeck, Karen

Publication type:

Article

Opal web services for biomedical applications.

Published in:

Nucleic Acids Research, 2010, v. 38, n. suppl_2, p. W724, doi. 10.1093/nar/gkq503

By:

Ren, Jingyuan;
Williams, Nadya;
Clementi, Luca;
Krishnan, Sriram;
Li, Wilfred W.

Publication type:

Article

ConSurf 2010: calculating evolutionary conservation in sequence and structure of proteins and nucleic acids.

Published in:

Nucleic Acids Research, 2010, v. 38, n. suppl_2, p. W529, doi. 10.1093/nar/gkq399

By:

Ashkenazy, Haim;
Erez, Elana;
Martz, Eric;
Pupko, Tal;
Ben-Tal, Nir

Publication type:

Article

BAGEL2: mining for bacteriocins in genomic data.

Published in:

Nucleic Acids Research, 2010, v. 38, n. suppl_2, p. W647, doi. 10.1093/nar/gkq365

By:

de Jong, Anne;
van Heel, Auke J.;
Kok, Jan;
Kuipers, Oscar P.

Publication type:

Article

MuD: an interactive web server for the prediction of non-neutral substitutions using protein structural data.

Published in:

Nucleic Acids Research, 2010, v. 38, n. suppl_2, p. W523, doi. 10.1093/nar/gkq528

By:

Wainreb, Gilad;
Ashkenazy, Haim;
Bromberg, Yana;
Starovolsky-Shitrit, Alina;
Haliloglu, Turkan;
Ruppin, Eytan;
Avraham, Karen B.;
Rost, Burkhard;
Ben-Tal, Nir

Publication type:

Article

Nucleic Acids Research.

Published in:: Nucleic Acids Research, 2010, v. 38, n. suppl_2, p. i, doi. 10.1093/nar/gkp1212
Publication type:: Article

TransFind—predicting transcriptional regulators for gene sets.

Published in:

Nucleic Acids Research, 2010, v. 38, n. suppl_2, p. W275, doi. 10.1093/nar/gkq438

By:

Kiełbasa, Szymon M.;
Klein, Holger;
Roider, Helge G.;
Vingron, Martin;
Blüthgen, Nils

Publication type:

Article

TranslatorX: multiple alignment of nucleotide sequences guided by amino acid translations.

Published in:

Nucleic Acids Research, 2010, v. 38, n. suppl_2, p. W7, doi. 10.1093/nar/gkq291

By:

Abascal, Federico;
Zardoya, Rafael;
Telford, Maximilian J.

Publication type:

Article

RSSsite: a reference database and prediction tool for the identification of cryptic Recombination Signal Sequences in human and murine genomes.

Published in:

Nucleic Acids Research, 2010, v. 38, n. suppl_2, p. W262, doi. 10.1093/nar/gkq391

By:

Merelli, Ivan;
Guffanti, Alessandro;
Fabbri, Marco;
Cocito, Andrea;
Furia, Laura;
Grazini, Ursula;
Bonnal, Raoul J.;
Milanesi, Luciano;
McBlane, Fraser

Publication type:

Article

AltAnalyze and DomainGraph: analyzing and visualizing exon expression data.

Published in:

Nucleic Acids Research, 2010, v. 38, n. suppl_2, p. W755, doi. 10.1093/nar/gkq405

By:

Emig, Dorothea;
Salomonis, Nathan;
Baumbach, Jan;
Lengauer, Thomas;
Conklin, Bruce R.;
Albrecht, Mario

Publication type:

Article

MPlot—a server to analyze and visualize tertiary structure contacts and geometrical features of helical membrane proteins.

Published in:

Nucleic Acids Research, 2010, v. 38, n. suppl_2, p. W602, doi. 10.1093/nar/gkq401

By:

Rose, Alexander;
Goede, Andrean;
Hildebrand, Peter W.

Publication type:

Article

PINT: Pathways INtegration Tool.

Published in:

Nucleic Acids Research, 2010, v. 38, n. suppl_2, p. W124, doi. 10.1093/nar/gkq499

By:

Wang, Y.-T.;
Huang, Y.-H.;
Chen, Y.-C.;
Hsu, C.-L.;
Yang, U.-C.

Publication type:

Article

MetExplore: a web server to link metabolomic experiments and genome-scale metabolic networks.

Published in:

Nucleic Acids Research, 2010, v. 38, n. suppl_2, p. W132, doi. 10.1093/nar/gkq312

By:

Cottret, Ludovic;
Wildridge, David;
Vinson, Florence;
Barrett, Michael P.;
Charles, Hubert;
Sagot, Marie-France;
Jourdan, Fabien

Publication type:

Article

MSEA: a web-based tool to identify biologically meaningful patterns in quantitative metabolomic data.

Published in:

Nucleic Acids Research, 2010, v. 38, n. suppl_2, p. W71, doi. 10.1093/nar/gkq329

By:

Xia, Jianguo;
Wishart, David S.

Publication type:

Article

IBWS: IST Bioinformatics Web Services.

Published in:

Nucleic Acids Research, 2010, v. 38, n. suppl_2, p. W712, doi. 10.1093/nar/gkq416

By:

Zappa, Achille;
Miele, Mariangela;
Romano, Paolo

Publication type:

Article

ZiFiT (Zinc Finger Targeter): an updated zinc finger engineering tool.

Published in:

Nucleic Acids Research, 2010, v. 38, n. suppl_2, p. W462, doi. 10.1093/nar/gkq319

By:

Sander, Jeffry D.;
Maeder, Morgan L.;
Reyon, Deepak;
Voytas, Daniel F.;
Joung, J. Keith;
Dobbs, Drena

Publication type:

Article

SiMMap: a web server for inferring site-moiety map to recognize interaction preferences between protein pockets and compound moieties.

Published in:

Nucleic Acids Research, 2010, v. 38, n. suppl_2, p. W424, doi. 10.1093/nar/gkq480

By:

Chen, Yen-Fu;
Hsu, Kai-Cheng;
Lin, Shen-Rong;
Wang, Wen-Ching;
Huang, Yu-Chi;
Yang, Jinn-Moon

Publication type:

Article

PROSESS: a protein structure evaluation suite and server.

Published in:

Nucleic Acids Research, 2010, v. 38, n. suppl_2, p. W633, doi. 10.1093/nar/gkq375

By:

Berjanskii, Mark;
Liang, Yongjie;
Zhou, Jianjun;
Tang, Peter;
Stothard, Paul;
Zhou, You;
Cruz, Joseph;
MacDonell, Cam;
Lin, Guohui;
Lu, Paul;
Wishart, David S.

Publication type:

Article

SMAP-WS: a parallel web service for structural proteome-wide ligand-binding site comparison.

Published in:

Nucleic Acids Research, 2010, v. 38, n. suppl_2, p. W441, doi. 10.1093/nar/gkq400

By:

Ren, Jingyuan;
Xie, Lei;
Li, Wilfred W.;
Bourne, Philip E.

Publication type:

Article

WebPrInSeS: automated full-length clone sequence identification and verification using high-throughput sequencing data.

Published in:

Nucleic Acids Research, 2010, v. 38, n. suppl_2, p. W378, doi. 10.1093/nar/gkq431

By:

Massouras, Andreas;
Decouttere, Frederik;
Hens, Korneel;
Deplancke, Bart

Publication type:

Article

e-LEA3D: a computational-aided drug design web server.

Published in:

Nucleic Acids Research, 2010, v. 38, n. suppl_2, p. W615, doi. 10.1093/nar/gkq322

By:

Douguet, Dominique

Publication type:

Article

mGenomeSubtractor: a web-based tool for parallel in silico subtractive hybridization analysis of multiple bacterial genomes.

Published in:

Nucleic Acids Research, 2010, v. 38, n. suppl_2, p. W194, doi. 10.1093/nar/gkq326

By:

Shao, Yucheng;
He, Xinyi;
Harrison, Ewan M.;
Tai, Cui;
Ou, Hong-Yu;
Rajakumar, Kumar;
Deng, Zixin

Publication type:

Article

SLiMFinder: a web server to find novel, significantly over-represented, short protein motifs.

Published in:

Nucleic Acids Research, 2010, v. 38, n. suppl_2, p. W534, doi. 10.1093/nar/gkq440

By:

Davey, Norman E.;
Haslam, Niall J.;
Shields, Denis C.;
Edwards, Richard J.

Publication type:

Article

SPOT: a web-based tool for using biological databases to prioritize SNPs after a genome-wide association study.

Published in:

Nucleic Acids Research, 2010, v. 38, n. suppl_2, p. W201, doi. 10.1093/nar/gkq513

By:

Saccone, Scott F.;
Bolze, Raphael;
Thomas, Prasanth;
Quan, Jiaxi;
Mehta, Gaurang;
Deelman, Ewa;
Tischfield, Jay A.;
Rice, John P.

Publication type:

Article

YLoc—an interpretable web server for predicting subcellular localization.

Published in:

Nucleic Acids Research, 2010, v. 38, n. suppl_2, p. W497, doi. 10.1093/nar/gkq477

By:

Briesemeister, Sebastian;
Rahnenführer, Jörg;
Kohlbacher, Oliver

Publication type:

Article

DBCP: a web server for disulfide bonding connectivity pattern prediction without the prior knowledge of the bonding state of cysteines.

Published in:

Nucleic Acids Research, 2010, v. 38, n. suppl_2, p. W503, doi. 10.1093/nar/gkq514

By:

Lin, Hsuan-Hung;
Tseng, Lin-Yu

Publication type:

Article

GIS: a comprehensive source for protein structure similarities.

Published in:

Nucleic Acids Research, 2010, v. 38, n. suppl_2, p. W46, doi. 10.1093/nar/gkq314

By:

Guerler, Aysam;
Knapp, Ernst-Walter

Publication type:

Article

SFmap: a web server for motif analysis and prediction of splicing factor binding sites.

Published in:

Nucleic Acids Research, 2010, v. 38, n. suppl_2, p. W281, doi. 10.1093/nar/gkq444

By:

Paz, Inbal;
Akerman, Martin;
Dror, Iris;
Kosti, Idit;
Mandel-Gutfreund, Yael

Publication type:

Article

GUIDANCE: a web server for assessing alignment confidence scores.

Published in:

Nucleic Acids Research, 2010, v. 38, n. suppl_2, p. W23, doi. 10.1093/nar/gkq443

By:

Penn, Osnat;
Privman, Eyal;
Ashkenazy, Haim;
Landan, Giddy;
Graur, Dan;
Pupko, Tal

Publication type:

Article