Works matching IS 03051048 AND DT 2010 AND VI 38 AND IP 7

Results: 45

Electrostatic hot spot on DNA-binding domains mediates phosphate desolvation and the pre-organization of specificity determinant side chains.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 7, p. 2134, doi. 10.1093/nar/gkp1132

By:

Temiz, Alpay N.;
Benos, Panayiotis V.;
Camacho, Carlos J.

Publication type:

Article

The human telomeric protein hTRF1 induces telomere-specific nucleosome mobility.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 7, p. 2247, doi. 10.1093/nar/gkp1228

By:

Pisano, Sabrina;
Leoni, Daniela;
Galati, Alessandra;
Rhodes, Daniela;
Savino, Maria;
Cacchione, Stefano

Publication type:

Article

RNPC1 modulates the RNA-binding activity of, and cooperates with, HuR to regulate p21 mRNA stability.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 7, p. 2256, doi. 10.1093/nar/gkp1229

By:

Cho, Seong Jun;
Zhang, Jin;
Chen, Xinbin

Publication type:

Article

Nucleic Acids Research.

Published in:: Nucleic Acids Research, 2010, v. 38, n. 7, p. i, doi. 10.1093/nar/gkq289
Publication type:: Article

A unified genetic, computational and experimental framework identifies functionally relevant residues of the homing endonuclease I-BmoI.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 7, p. 2411, doi. 10.1093/nar/gkp1223

By:

Kleinstiver, Benjamin P.;
Fernandes, Andrew D.;
Gloor, Gregory B.;
Edgell, David R.

Publication type:

Article

Differential coregulator requirements for function of the hematopoietic transcription factor GATA-1 at endogenous loci.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 7, p. 2190, doi. 10.1093/nar/gkp1159

By:

Pope, Nathaniel J.;
Bresnick, Emery H.

Publication type:

Article

Differential stability of 2′F-ANA•RNA and ANA•RNA hybrid duplexes: roles of structure, pseudohydrogen bonding, hydration, ion uptake and flexibility.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 7, p. 2498, doi. 10.1093/nar/gkp1225

By:

Watts, Jonathan K.;
Martín-Pintado, Nerea;
Gómez-Pinto, Irene;
Schwartzentruber, Jeremy;
Portella, Guillem;
Orozco, Modesto;
González, Carlos;
Damha, Masad J.

Publication type:

Article

Zip nucleic acids are potent hydrolysis probes for quantitative PCR.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 7, p. e95, doi. 10.1093/nar/gkp1218

By:

Paris, Clément;
Moreau, Valérie;
Deglane, Gaëlle;
Voirin, Emilie;
Erbacher, Patrick;
Lenne-Samuel, Nathalie

Publication type:

Article

Increased origin activity in transformed versus normal cells: identification of novel protein players involved in DNA replication and cellular transformation.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 7, p. 2314, doi. 10.1093/nar/gkp1192

By:

Di Paola, Domenic;
Rampakakis, Emmanouil;
Chan, Man Kid;
Arvanitis, Dina N.;
Zannis-Hadjopoulos, Maria

Publication type:

Article

Yeast arginine methyltransferase Hmt1p regulates transcription elongation and termination by methylating Npl3p.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 7, p. 2217, doi. 10.1093/nar/gkp1133

By:

Wong, Chi-Ming;
Tang, Hei-Man Vincent;
Kong, Ka-Yiu Edwin;
Wong, Gee-Wan Oscar;
Qiu, Hongfang;
Jin, Dong-Yan;
Hinnebusch, Alan G.

Publication type:

Article

Incorporating sequence quality data into alignment improves DNA read mapping.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 7, p. e100, doi. 10.1093/nar/gkq010

By:

Frith, Martin C.;
Wan, Raymond;
Horton, Paul

Publication type:

Article

Subscriptions.

Published in:: Nucleic Acids Research, 2010, v. 38, n. 7, p. iii, doi. 10.1093/nar/gkq290
Publication type:: Article

Commandeering a biological pathway using aptamer-derived molecular adaptors.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 7, p. e93, doi. 10.1093/nar/gkp1207

By:

Mallik, Prabhat K.;
Nishikawa, Kimi;
Millis, Albert J. T.;
Shi, Hua

Publication type:

Article

Glycosylases and AP-cleaving enzymes as a general tool for probe-directed cleavage of ssDNA targets.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 7, p. e99, doi. 10.1093/nar/gkp1238

By:

Howell, W. Mathias;
Grundberg, Ida;
Faryna, Marta;
Landegren, Ulf;
Nilsson, Mats

Publication type:

Article

Fluorescent probes for the analysis of DNA strand scission in base excision repair.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 7, p. e101, doi. 10.1093/nar/gkq022

By:

Matsumoto, Naoyuki;
Toga, Tatsuya;
Hayashi, Ryosuke;
Sugasawa, Kaoru;
Katayanagi, Katsuo;
Ide, Hiroshi;
Kuraoka, Isao;
Iwai, Shigenori

Publication type:

Article

Anatomy of mouse recombination hot spots.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 7, p. 2346, doi. 10.1093/nar/gkp1251

By:

Wu, Zhen K.;
Getun, Irina V.;
Bois, Philippe R. J.

Publication type:

Article

The ribosome assembly factor Nep1 responsible for Bowen–Conradi syndrome is a pseudouridine-N1-specific methyltransferase.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 7, p. 2387, doi. 10.1093/nar/gkp1189

By:

Wurm, Jan Philip;
Meyer, Britta;
Bahr, Ute;
Held, Martin;
Frolow, Olga;
Kötter, Peter;
Engels, Joachim W.;
Heckel, Alexander;
Karas, Michael;
Entian, Karl-Dieter;
Wöhnert, Jens

Publication type:

Article

Tfold: efficient in silico prediction of non-coding RNA secondary structures.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 7, p. 2453, doi. 10.1093/nar/gkp1067

By:

Engelen, Stéfan;
Tahi, Fariza

Publication type:

Article

A novel mechanism for the scission of double-stranded DNA: BfiI cuts both 3′–5′ and 5′–3′ strands by rotating a single active site.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 7, p. 2399, doi. 10.1093/nar/gkp1194

By:

Sasnauskas, Giedrius;
Zakrys, Linas;
Zaremba, Mindaugas;
Cosstick, Richard;
Gaynor, James W.;
Halford, Stephen E.;
Siksnys, Virginijus

Publication type:

Article

Waved aCGH: to smooth or not to smooth.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 7, p. e94

By:

Leprêtre, F.;
Villenet, C.;
Quief, S.;
Nibourel, O.;
Jacquemin, C.;
Troussard, X.;
Jardin, F.;
Gibson, F.;
Kerckaert, J. P.;
Roumier, C.;
Figeac, M.

Publication type:

Article

On the detection and refinement of transcription factor binding sites using ChIP-Seq data.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 7, p. 2154, doi. 10.1093/nar/gkp1180

By:

Hu, Ming;
Yu, Jindan;
Taylor, Jeremy M. G.;
Chinnaiyan, Arul M.;
Qin, Zhaohui S.

Publication type:

Article

Analysis of the impact of a uracil DNA glycosylase attenuated in AP-DNA binding in maintenance of the genomic integrity in Escherichia coli.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 7, p. 2291, doi. 10.1093/nar/gkp1210

By:

Bharti, Sanjay Kumar;
Varshney, Umesh

Publication type:

Article

Homologous over-extension: a challenge for iterative similarity searches.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 7, p. 2177, doi. 10.1093/nar/gkp1219

By:

Gonzalez, Mileidy W.;
Pearson, William R.

Publication type:

Article

Quadruplex structures of muscle gene promoter sequences enhance in vivo MyoD-dependent gene expression.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 7, p. 2369, doi. 10.1093/nar/gkp1208

By:

Shklover, Jeny;
Weisman-Shomer, Pnina;
Yafe, Anat;
Fry, Michael

Publication type:

Article

Protein arginine methyltransferase 6 regulates multiple aspects of gene expression.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 7, p. 2201, doi. 10.1093/nar/gkp1203

By:

Harrison, Matthew J.;
Tang, Yue Hang;
Dowhan, Dennis H.

Publication type:

Article

DotKnot: pseudoknot prediction using the probability dot plot under a refined energy model.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 7, p. e103, doi. 10.1093/nar/gkq021

By:

Sperschneider, Jana;
Datta, Amitava

Publication type:

Article

Investigating the role of the Est3 protein in yeast telomere replication.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 7, p. 2279, doi. 10.1093/nar/gkp1173

By:

Lee, Jaesung;
Mandell, Edward K.;
Rao, Timsi;
Wuttke, Deborah S.;
Lundblad, Victoria

Publication type:

Article

Functional cooperation between CREM and GCNF directs gene expression in haploid male germ cells.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 7, p. 2268, doi. 10.1093/nar/gkp1220

By:

Rajković, Mirjana;
Iwen, K. Alexander H.;
Hofmann, Peter J.;
Harneit, Angelika;
Weitzel, Joachim M.

Publication type:

Article

Genome-wide identification of hypoxia-inducible factor binding sites and target genes by a probabilistic model integrating transcription-profiling data and in silico binding site prediction.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 7, p. 2332, doi. 10.1093/nar/gkp1205

By:

Ortiz-Barahona, Amaya;
Villar, Diego;
Pescador, Nuria;
Amigo, Jorge;
del Peso, Luis

Publication type:

Article

A sensitive non-radioactive northern blot method to detect small RNAs.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 7, p. e98, doi. 10.1093/nar/gkp1235

By:

Kim, Sang Woo;
Li, Zhihua;
Moore, Patrick S.;
Monaghan, A.Paula;
Chang, Yuan;
Nichols, Mark;
John, Bino

Publication type:

Article

Streamlined determination of processive run length and mechanochemical coupling of nucleic acid motor activities.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 7, p. e102, doi. 10.1093/nar/gkq014

By:

Gyimesi, Máté;
Sarlós, Kata;
Derényi, Imre;
Kovács, Mihály

Publication type:

Article

An RNA-based transcription activator derived from an inhibitory aptamer.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 7, p. 2378, doi. 10.1093/nar/gkp1227

By:

Wang, Shengchun;
Shepard, Jason R. E.;
Shi, Hua

Publication type:

Article

Custom human endogenous retroviruses dedicated microarray identifies self-induced HERV-W family elements reactivated in testicular cancer upon methylation control.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 7, p. 2229, doi. 10.1093/nar/gkp1214

By:

Gimenez, Juliette;
Montgiraud, Cécile;
Pichon, Jean-Philippe;
Bonnaud, Bertrand;
Arsac, Maud;
Ruel, Karine;
Bouton, Olivier;
Mallet, François

Publication type:

Article

Genome comparison and context analysis reveals putative mobile forms of restriction–modification systems and related rearrangements.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 7, p. 2428, doi. 10.1093/nar/gkp1226

By:

Furuta, Yoshikazu;
Abe, Kentaro;
Kobayashi, Ichizo

Publication type:

Article

The DNA binding and 3′-end preferential activity of human tyrosyl-DNA phosphodiesterase.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 7, p. 2444, doi. 10.1093/nar/gkp1206

By:

Dexheimer, Thomas S.;
Stephen, Andrew G.;
Fivash, Matthew J.;
Fisher, Robert J.;
Pommier, Yves

Publication type:

Article

Nucleic Acids Research.

Published in:: Nucleic Acids Research, 2010, v. 38, n. 7, p. ii, doi. 10.1093/nar/gkq288
Publication type:: Article

Estimating the proportion of microarray probes expressed in an RNA sample.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 7, p. 2168, doi. 10.1093/nar/gkp1204

By:

Shi, Wei;
de Graaf, Carolyn A.;
Kinkel, Sarah A.;
Achtman, Ariel H.;
Baldwin, Tracey;
Schofield, Louis;
Scott, Hamish S.;
Hilton, Douglas J.;
Smyth, Gordon K.

Publication type:

Article

MBNL1 binds GC motifs embedded in pyrimidines to regulate alternative splicing.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 7, p. 2467, doi. 10.1093/nar/gkp1209

By:

Goers, Emily S.;
Purcell, Jamie;
Voelker, Rodger B.;
Gates, Devika P.;
Berglund, J. Andrew

Publication type:

Article

Quality measures for protein alignment benchmarks.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 7, p. 2145, doi. 10.1093/nar/gkp1196

By:

Edgar, Robert C.

Publication type:

Article

Efficient integration of transgenes into a defined locus in human embryonic stem cells.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 7, p. e96, doi. 10.1093/nar/gkp1234

By:

Sakurai, Kenji;
Shimoji, Miho;
Tahimic, Candice G. T.;
Aiba, Kazuhiro;
Kawase, Eihachiro;
Hasegawa, Kouichi;
Amagai, Yuji;
Suemori, Hirofumi;
Nakatsuji, Norio

Publication type:

Article

A truncated DNA-damage-signaling response is activated after DSB formation in the G1 phase of Saccharomyces cerevisiae.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 7, p. 2302, doi. 10.1093/nar/gkp1222

By:

Janke, Ryan;
Herzberg, Kristina;
Rolfsmeier, Michael;
Mar, Jordan;
Bashkirov, Vladimir I.;
Haghnazari, Edwin;
Cantin, Greg;
Yates, John R.;
Heyer, Wolf-Dietrich

Publication type:

Article

DNA supercoiling and its role in DNA decatenation and unknotting.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 7, p. 2119, doi. 10.1093/nar/gkp1161

By:

Witz, Guillaume;
Stasiak, Andrzej

Publication type:

Article

Impact of probe annotation on the integration of miRNA–mRNA expression profiles for miRNA target detection.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 7, p. e97, doi. 10.1093/nar/gkp1239

By:

Sales, Gabriele;
Coppe, Alessandro;
Bicciato, Silvio;
Bortoluzzi, Stefania;
Romualdi, Chiara

Publication type:

Article

Location analysis for the estrogen receptor-α reveals binding to diverse ERE sequences and widespread binding within repetitive DNA elements.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 7, p. 2355, doi. 10.1093/nar/gkp1188

By:

Mason, Christopher E.;
Shu, Feng-Jue;
Wang, Cheng;
Session, Ryan M.;
Kallen, Roland G.;
Sidell, Neil;
Yu, Tianwei;
Liu, Mei Hui;
Cheung, Edwin;
Kallen, Caleb B.

Publication type:

Article

Insight into the induction mechanism of the GntR/HutC bacterial transcription regulator YvoA.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 7, p. 2485, doi. 10.1093/nar/gkp1191

By:

Resch, Marcus;
Schiltz, Emile;
Titgemeyer, Fritz;
Muller, Yves A.

Publication type:

Article