Works matching IS 03051048 AND DT 2010 AND VI 38 AND IP 17

Results: 37

Global mapping of binding sites for Nrf2 identifies novel targets in cell survival response through ChIP-Seq profiling and network analysis.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 17, p. 5718, doi. 10.1093/nar/gkq212

By:

Malhotra, Deepti;
Portales-Casamar, Elodie;
Singh, Anju;
Srivastava, Siddhartha;
Arenillas, David;
Happel, Christine;
Shyr, Casper;
Wakabayashi, Nobunao;
Kensler, Thomas W.;
Wasserman, Wyeth W.;
Biswal, Shyam

Publication type:

Article

Aldosterone and vasopressin affect α- and γ-ENaC mRNA translation.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 17, p. 5746, doi. 10.1093/nar/gkq267

By:

Perlewitz, Andrea;
Nafz, Benno;
Skalweit, Angela;
Fähling, Michael;
Persson, Pontus B.;
Thiele, Bernd-Joachim

Publication type:

Article

Direct measurements of the nucleosome-forming preferences of periodic DNA motifs challenge established models.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 17, p. 5672, doi. 10.1093/nar/gkq279

By:

Takasuka, Taichi E.;
Stein, Arnold

Publication type:

Article

Subscriptions.

Published in:: Nucleic Acids Research, 2010, v. 38, n. 17, p. iii, doi. 10.1093/nar/gkq881
Publication type:: Article

The non-coding RNA TERRA is a natural ligand and direct inhibitor of human telomerase.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 17, p. 5797, doi. 10.1093/nar/gkq296

By:

Redon, Sophie;
Reichenbach, Patrick;
Lingner, Joachim

Publication type:

Article

Incorporation of pseudouridine into mRNA enhances translation by diminishing PKR activation.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 17, p. 5884, doi. 10.1093/nar/gkq347

By:

Anderson, Bart R.;
Muramatsu, Hiromi;
Nallagatla, Subba R.;
Bevilacqua, Philip C.;
Sansing, Lauren H.;
Weissman, Drew;
Karikó, Katalin

Publication type:

Article

Rank–rank hypergeometric overlap: identification of statistically significant overlap between gene-expression signatures.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 17, p. e169, doi. 10.1093/nar/gkq636

By:

Plaisier, Seema B.;
Taschereau, Richard;
Wong, Justin A.;
Graeber, Thomas G.

Publication type:

Article

Rapid decay of unstable Leishmania mRNAs bearing a conserved retroposon signature 3′-UTR motif is initiated by a site-specific endonucleolytic cleavage without prior deadenylation.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 17, p. 5867, doi. 10.1093/nar/gkq349

By:

Müller, Michaela;
Padmanabhan, Prasad K.;
Rochette, Annie;
Mukherjee, Debdutta;
Smith, Martin;
Dumas, Carole;
Papadopoulou, Barbara

Publication type:

Article

The archaeal transamidosome for RNA-dependent glutamine biosynthesis.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 17, p. 5774, doi. 10.1093/nar/gkq336

By:

Rampias, Theodoros;
Sheppard, Kelly;
Söll, Dieter

Publication type:

Article

The mechanism and control of DNA transfer by the conjugative relaxase of resistance plasmid pCU1.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 17, p. 5929, doi. 10.1093/nar/gkq303

By:

Nash, Rebekah Potts;
Habibi, Sohrab;
Cheng, Yuan;
Lujan, Scott A.;
Redinbo, Matthew R.

Publication type:

Article

Experimental identification and characterization of 97 novel npcRNA candidates in Salmonella enterica serovar Typhi.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 17, p. 5893, doi. 10.1093/nar/gkq281

By:

Chinni, Suresh V.;
Raabe, Carsten A.;
Zakaria, Robaiza;
Randau, Gerrit;
Hoe, Chee Hock;
Zemann, Anja;
Brosius, Juergen;
Tang, Thean-Hock;
Rozhdestvensky, Timofey S.

Publication type:

Article

InTERTpreting telomerase structure and function.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 17, p. 5609, doi. 10.1093/nar/gkq370

By:

Wyatt, Haley D. M.;
West, Stephen C.;
Beattie, Tara L.

Publication type:

Article

Deep sequencing reveals differential expression of microRNAs in favorable versus unfavorable neuroblastoma.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 17, p. 5919, doi. 10.1093/nar/gkq342

By:

Schulte, Johannes H.;
Marschall, Tobias;
Martin, Marcel;
Rosenstiel, Philipp;
Mestdagh, Pieter;
Schlierf, Stefanie;
Thor, Theresa;
Vandesompele, Jo;
Eggert, Angelika;
Schreiber, Stefan;
Rahmann, Sven;
Schramm, Alexander

Publication type:

Article

Genome-wide DNA methylation analysis in cohesin mutant human cell lines.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 17, p. 5657, doi. 10.1093/nar/gkq346

By:

Liu, Jinglan;
Zhang, Zhe;
Bando, Masashige;
Itoh, Takehiko;
Deardorff, Matthew A.;
Li, Jennifer R.;
Clark, Dinah;
Kaur, Maninder;
Tatsuro, Kondo;
Kline, Antonie D.;
Chang, Celia;
Vega, Hugo;
Jackson, Laird G.;
Spinner, Nancy B.;
Shirahige, Katsuhiko;
Krantz, Ian D.

Publication type:

Article

Nucleic Acids Research.

Published in:: Nucleic Acids Research, 2010, v. 38, n. 17, p. i, doi. 10.1093/nar/gkq289
Publication type:: Article

A screen of chemical modifications identifies position-specific modification by UNA to most potently reduce siRNA off-target effects.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 17, p. 5761, doi. 10.1093/nar/gkq341

By:

Bramsen, Jesper B.;
Pakula, Malgorzata M.;
Hansen, Thomas B.;
Bus, Claus;
Langkjær, Niels;
Odadzic, Dalibor;
Smicius, Romualdas;
Wengel, Suzy L.;
Chattopadhyaya, Jyoti;
Engels, Joachim W.;
Herdewijn, Piet;
Wengel, Jesper;
Kjems, Jørgen

Publication type:

Article

Cation-dependent cleavage of the duplex form of the subtype-B HIV-1 RNA dimerization initiation site.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 17, p. 5807, doi. 10.1093/nar/gkq344

By:

Ennifar, Eric;
Walter, Philippe;
Dumas, Philippe

Publication type:

Article

A two-parameter generalized Poisson model to improve the analysis of RNA-seq data.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 17, p. e170, doi. 10.1093/nar/gkq670

By:

Srivastava, Sudeep;
Chen, Liang

Publication type:

Article

tRNASec is transcribed by RNA polymerase II in Trypanosoma brucei but not in humans.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 17, p. 5833, doi. 10.1093/nar/gkq345

By:

Aeby, Eric;
Ullu, Elisabetta;
Yepiskoposyan, Hasmik;
Schimanski, Bernd;
Roditi, Isabel;
Mühlemann, Oliver;
Schneider, André

Publication type:

Article

A small nucleolar RNA functions in rRNA processing in Caenorhabditis elegans.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 17, p. 5909, doi. 10.1093/nar/gkq335

By:

Hokii, Yusuke;
Sasano, Yumi;
Sato, Mayu;
Sakamoto, Hiroshi;
Sakata, Kazumi;
Shingai, Ryuzo;
Taneda, Akito;
Oka, Shigenori;
Himeno, Hyouta;
Muto, Akira;
Fujiwara, Toshinobu;
Ushida, Chisato

Publication type:

Article

Recognition and discrimination of target mRNAs by Sib RNAs, a cis-encoded sRNA family.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 17, p. 5851, doi. 10.1093/nar/gkq292

By:

Han, Kook;
Kim, Kwang-sun;
Bak, Geunu;
Park, Hongmarn;
Lee, Younghoon

Publication type:

Article

Requirements for catalysis in the Cre recombinase active site.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 17, p. 5817, doi. 10.1093/nar/gkq384

By:

Gibb, Bryan;
Gupta, Kushol;
Ghosh, Kaushik;
Sharp, Robert;
Chen, James;
Van Duyne, Gregory D.

Publication type:

Article

A novel single-stranded DNA-specific 3′–5′ exonuclease, Thermus thermophilus exonuclease I, is involved in several DNA repair pathways.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 17, p. 5692, doi. 10.1093/nar/gkq350

By:

Shimada, Atsuhiro;
Masui, Ryoji;
Nakagawa, Noriko;
Takahata, Yoshio;
Kim, Kwang;
Kuramitsu, Seiki;
Fukui, Kenji

Publication type:

Article

A practical, bioinformatic workflow system for large data sets generated by next-generation sequencing.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 17, p. e171, doi. 10.1093/nar/gkq667

By:

Cantacessi, Cinzia;
Jex, Aaron R.;
Hall, Ross S.;
Young, Neil D.;
Campbell, Bronwyn E.;
Joachim, Anja;
Nolan, Matthew J.;
Abubucker, Sahar;
Sternberg, Paul W.;
Ranganathan, Shoba;
Mitreva, Makedonka;
Gasser, Robin B.

Publication type:

Article

Recognition of tRNAGln by Helicobacter pylori GluRS2—a tRNAGln-specific glutamyl-tRNA synthetase.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 17, p. 5958, doi. 10.1093/nar/gkq828

By:

Chang, Keng-Ming;
Hendrickson, Tamara L.

Publication type:

Article

Physical basis of the inducer-dependent cooperativity of the Central glycolytic genes Repressor/DNA complex.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 17, p. 5944, doi. 10.1093/nar/gkq334

By:

Chaix, Denis;
Ferguson, Matthew L.;
Atmanene, Cedric;
Van Dorsselaer, Alain;
Sanglier-Cianférani, Sarah;
Royer, Catherine A.;
Declerck, Nathalie

Publication type:

Article

Mathematical modelling of whole chromosome replication.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 17, p. 5623, doi. 10.1093/nar/gkq343

By:

de Moura, Alessandro P. S.;
Retkute, Renata;
Hawkins, Michelle;
Nieduszynski, Conrad A.

Publication type:

Article

Identification of β-catenin binding regions in colon cancer cells using ChIP-Seq.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 17, p. 5735, doi. 10.1093/nar/gkq363

By:

Bottomly, Daniel;
Kyler, Sydney L.;
McWeeney, Shannon K.;
Yochum, Gregory S.

Publication type:

Article

Quantitative analysis of conditional gene inactivation using rationally designed, tetracycline-controlled miRNAs.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 17, p. e168, doi. 10.1093/nar/gkq616

By:

Berger, Stefan M.;
Pesold, Brigitte;
Reber, Simone;
Schönig, Kai;
Berger, Annette J.;
Weidenfeld, Ina;
Miao, Jun;
Berger, Martin R.;
Gruss, Oliver J.;
Bartsch, Dusan

Publication type:

Article

Metnase promotes restart and repair of stalled and collapsed replication forks.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 17, p. 5681, doi. 10.1093/nar/gkq339

By:

De Haro, Leyma P.;
Wray, Justin;
Williamson, Elizabeth A.;
Durant, Stephen T.;
Corwin, Lori;
Gentry, Amanda C.;
Osheroff, Neil;
Lee, Suk-Hee;
Hromas, Robert;
Nickoloff, Jac A.

Publication type:

Article

Discovering modulators of gene expression.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 17, p. 5648, doi. 10.1093/nar/gkq287

By:

Babur, Özgün;
Demir, Emek;
Gönen, Mithat;
Sander, Chris;
Dogrusoz, Ugur

Publication type:

Article

Synthesis-dependent microhomology-mediated end joining accounts for multiple types of repair junctions.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 17, p. 5706, doi. 10.1093/nar/gkq379

By:

Yu, Amy Marie;
McVey, Mitch

Publication type:

Article

Multiple roles of the RNA polymerase β′ SW2 region in transcription initiation, promoter escape, and RNA elongation.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 17, p. 5784, doi. 10.1093/nar/gkq355

By:

Pupov, Danil;
Miropolskaya, Nataliya;
Sevostyanova, Anastasiya;
Bass, Irina;
Artsimovitch, Irina;
Kulbachinskiy, Andrey

Publication type:

Article

Nucleic Acids Research.

Published in:: Nucleic Acids Research, 2010, v. 38, n. 17, p. ii, doi. 10.1093/nar/gkq876
Publication type:: Article

siRNAs compete with miRNAs for methylation by HEN1 in Arabidopsis.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 17, p. 5844, doi. 10.1093/nar/gkq348

By:

Yu, Bin;
Bi, Liu;
Zhai, Jixian;
Agarwal, Manu;
Li, Shengben;
Wu, Qingfa;
Ding, Shou-Wei;
Meyers, Blake C.;
Vaucheret, Hervé;
Chen, Xuemei

Publication type:

Article

Pushing the limits of what is achievable in protein–DNA docking: benchmarking HADDOCK’s performance.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 17, p. 5634, doi. 10.1093/nar/gkq222

By:

van Dijk, Marc;
Bonvin, Alexandre M. J. J.

Publication type:

Article

Microarray-based STR genotyping using RecA-mediated ligation.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 17, p. e172, doi. 10.1093/nar/gkq657

By:

Herrmann, David;
Rose, Emily;
Müller, Uwe;
Wagner, Robert

Publication type:

Article