Works matching IS 03051048 AND DT 2010 AND VI 38 AND IP 14

Results: 41

Insights into the mechanism of Rad51 recombinase from the structure and properties of a filament interface mutant.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 14, p. 4889, doi. 10.1093/nar/gkq209

By:

Chen, Jianhong;
Villanueva, Nicolas;
Rould, Mark A.;
Morrical, Scott W.

Publication type:

Article

Non-canonical DNA transcription enzymes and the conservation of two-barrel RNA polymerases.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 14, p. 4559, doi. 10.1093/nar/gkq201

By:

Ruprich-Robert, Gwenaël;
Thuriaux, Pierre

Publication type:

Article

Comprehensive reanalysis of transcription factor knockout expression data in Saccharomyces cerevisiae reveals many new targets.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 14, p. 4768, doi. 10.1093/nar/gkq232

By:

Reimand, Jüri;
Vaquerizas, Juan M.;
Todd, Annabel E.;
Vilo, Jaak;
Luscombe, Nicholas M.

Publication type:

Article

Distinct 5′ UTRs regulate XIAP expression under normal growth conditions and during cellular stress.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 14, p. 4665, doi. 10.1093/nar/gkq241

By:

Riley, Alura;
Jordan, Lindsay E.;
Holcik, Martin

Publication type:

Article

Recruitment of MBD1 to target genes requires sequence-specific interaction of the MBD domain with methylated DNA.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 14, p. 4620, doi. 10.1093/nar/gkq228

By:

Clouaire, Thomas;
de las Heras, Jose Ignacio;
Merusi, Cara;
Stancheva, Irina

Publication type:

Article

Rad52 SUMOylation affects the efficiency of the DNA repair.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 14, p. 4708, doi. 10.1093/nar/gkq195

By:

Altmannova, Veronika;
Eckert-Boulet, Nadine;
Arneric, Milica;
Kolesar, Peter;
Chaloupkova, Radka;
Damborsky, Jiri;
Sung, Patrick;
Zhao, Xiaolan;
Lisby, Michael;
Krejci, Lumir

Publication type:

Article

Resolution and characterization of the structural polymorphism of a single quadruplex-forming sequence.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 14, p. 4877, doi. 10.1093/nar/gkq166

By:

Dailey, Magdalena M.;
Miller, M. Clarke;
Bates, Paula J.;
Lane, Andrew N.;
Trent, John O.

Publication type:

Article

Use of a microscope stage-mounted Nickel-63 microirradiator for real-time observation of the DNA double-strand break response.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 14, p. e144, doi. 10.1093/nar/gkq409

By:

Cao, Zhen;
Kuhne, Wendy W.;
Steeb, Jennifer;
Merkley, Mark A.;
Zhou, Yunfeng;
Janata, Jiri;
Dynan, William S.

Publication type:

Article

Using next-generation sequencing for high resolution multiplex analysis of copy number variation from nanogram quantities of DNA from formalin-fixed paraffin-embedded specimens.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 14, p. e151, doi. 10.1093/nar/gkq510

By:

Wood, Henry M.;
Belvedere, Ornella;
Conway, Caroline;
Daly, Catherine;
Chalkley, Rebecca;
Bickerdike, Melissa;
McKinley, Claire;
Egan, Phil;
Ross, Lisa;
Hayward, Bruce;
Morgan, Joanne;
Davidson, Leslie;
MacLennan, Ken;
Ong, Thian K.;
Papagiannopoulos, Kostas;
Cook, Ian;
Adams, David J.;
Taylor, Graham R.;
Rabbitts, Pamela

Publication type:

Article

Binding of lac repressor-GFP fusion protein to lac operator sites inserted in the tobacco chloroplast genome examined by chromatin immunoprecipitation.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 14, p. e145, doi. 10.1093/nar/gkq413

By:

Newell, Christine A.;
Gray, John C.

Publication type:

Article

Detection of splice junctions from paired-end RNA-seq data by SpliceMap.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 14, p. 4570

By:

Au, Kin Fai;
Jiang, Hui;
Lin, Lan;
Xing, Yi;
Wong, Wing Hung

Publication type:

Article

A universal TagModule collection for parallel genetic analysis of microorganisms.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 14, p. e146, doi. 10.1093/nar/gkq419

By:

Oh, Julia;
Fung, Eula;
Price, Morgan N.;
Dehal, Paramvir S.;
Davis, Ronald W.;
Giaever, Guri;
Nislow, Corey;
Arkin, Adam P.;
Deutschbauer, Adam

Publication type:

Article

Transcriptional corepressor SHP recruits SIRT1 histone deacetylase to inhibit LRH-1 transactivation.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 14, p. 4607, doi. 10.1093/nar/gkq227

By:

Chanda, Dipanjan;
Xie, Yuan-Bin;
Choi, Hueng-Sik

Publication type:

Article

Enhancement of gene targeting in human cells by intranuclear permeation of the Saccharomyces cerevisiae Rad52 protein.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 14, p. e149, doi. 10.1093/nar/gkq486

By:

Kalvala, Arjun;
Rainaldi, Giuseppe;
Di Primio, Cristina;
Liverani, Vania;
Falaschi, Arturo;
Galli, Alvaro

Publication type:

Article

Global and local depletion of ternary complex limits translational elongation.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 14, p. 4778, doi. 10.1093/nar/gkq196

By:

Zhang, Gong;
Fedyunin, Ivan;
Miekley, Oskar;
Valleriani, Angelo;
Moura, Alessandro;
Ignatova, Zoya

Publication type:

Article

Northern blot detection of endogenous small RNAs (∼14 nt) in bacterial total RNA extracts.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 14, p. e147, doi. 10.1093/nar/gkq437

By:

Beckmann, Benedikt M.;
Grünweller, Arnold;
Weber, Michael H. W.;
Hartmann, Roland K.

Publication type:

Article

CdnL, a member of the large CarD-like family of bacterial proteins, is vital for Myxococcus xanthus and differs functionally from the global transcriptional regulator CarD.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 14, p. 4586, doi. 10.1093/nar/gkq214

By:

García-Moreno, Diana;
Abellón-Ruiz, Javier;
García-Heras, Francisco;
Murillo, Francisco J.;
Padmanabhan, S.;
Elías-Arnanz, Montserrat

Publication type:

Article

NUDT16 is a (deoxy)inosine diphosphatase, and its deficiency induces accumulation of single-strand breaks in nuclear DNA and growth arrest.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 14, p. 4834, doi. 10.1093/nar/gkq249

By:

Iyama, Teruaki;
Abolhassani, Nona;
Tsuchimoto, Daisuke;
Nonaka, Mari;
Nakabeppu, Yusaku

Publication type:

Article

The RNA backbone plays a crucial role in mediating the intrinsic stability of the GpU dinucleotide platform and the GpUpA/GpA miniduplex.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 14, p. 4868, doi. 10.1093/nar/gkq155

By:

Lu, Xiang-Jun;
Olson, Wilma K.;
Bussemaker, Harmen J.

Publication type:

Article

WRN helicase unwinds Okazaki fragment-like hybrids in a reaction stimulated by the human DHX9 helicase.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 14, p. 4722, doi. 10.1093/nar/gkq240

By:

Chakraborty, Prasun;
Grosse, Frank

Publication type:

Article

Numerical modelling of microRNA-mediated mRNA decay identifies novel mechanism of microRNA controlled mRNA downregulation.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 14, p. 4579, doi. 10.1093/nar/gkq220

By:

Vohradsky, Jiri;
Panek, Josef;
Vomastek, Tomas

Publication type:

Article

Identification and characterization of alternative promoters of zebrafish Rtn-4/Nogo genes in cultured cells and zebrafish embryos.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 14, p. 4635, doi. 10.1093/nar/gkq230

By:

Chen, Yi-Chung;
Wu, Bo-Kai;
Chu, Cheng-Ying;
Cheng, Chia-Hsiung;
Han, Hau-Wei;
Chen, Gen-Der;
Lee, Ming-Ting;
Hwang, Pung-Pung;
Kawakami, Koichi;
Chang, Chun-Che;
Huang, Chang-Jen

Publication type:

Article

The C-terminus of Utp4, mutated in childhood cirrhosis, is essential for ribosome biogenesis.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 14, p. 4798, doi. 10.1093/nar/gkq185

By:

Freed, Emily F.;
Baserga, Susan J.

Publication type:

Article

Silenced yeast chromatin is maintained by Sir2 in preference to permitting histone acetylations for efficient NER.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 14, p. 4675, doi. 10.1093/nar/gkq242

By:

Irizar, Agurtzane;
Yu, Yachuan;
Reed, Simon H.;
Louis, Edward J.;
Waters, Raymond

Publication type:

Article

Genome-wide mapping of histone H4 serine-1 phosphorylation during sporulation in Saccharomyces cerevisiae.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 14, p. 4599, doi. 10.1093/nar/gkq218

By:

Govin, Jérôme;
Schug, Jonathan;
Krishnamoorthy, Thanuja;
Dorsey, Jean;
Khochbin, Saadi;
Berger, Shelley L.

Publication type:

Article

Ubc13 dosage is critical for immunoglobulin gene conversion and gene targeting in vertebrate cells.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 14, p. 4701, doi. 10.1093/nar/gkq154

By:

Ertongur, Isin;
Tomi, Nils-Sebastian;
Kutzera, André;
Fischer-Burkart, Sabine;
Jungnickel, Berit

Publication type:

Article

Unconstrained mining of transcript data reveals increased alternative splicing complexity in the human transcriptome.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 14, p. 4740, doi. 10.1093/nar/gkq197

By:

Mollet, I. G.;
Ben-Dov, Claudia;
Felício-Silva, Daniel;
Grosso, A. R.;
Eleutério, Pedro;
Alves, Ruben;
Staller, Ray;
Silva, Tito Santos;
Carmo-Fonseca, Maria

Publication type:

Article

Dynamic evolution of megasatellites in yeasts.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 14, p. 4731, doi. 10.1093/nar/gkq207

By:

Rolland, Thomas;
Dujon, Bernard;
Richard, Guy-Franck

Publication type:

Article

MCAF1 and synergistic activation of the transcription of Epstein–Barr virus lytic genes by Rta and Zta.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 14, p. 4687, doi. 10.1093/nar/gkq243

By:

Chang, Li-Kwan;
Chuang, Jian-Ying;
Nakao, Mitsuyoshi;
Liu, Shih-Tung

Publication type:

Article

Nucleic Acids Research.

Published in:: Nucleic Acids Research, 2010, v. 38, n. 14, p. i, doi. 10.1093/nar/gkq289
Publication type:: Article

The distribution of active RNA polymerase II along the transcribed region is gene-specific and controlled by elongation factors.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 14, p. 4651, doi. 10.1093/nar/gkq215

By:

Rodríguez-Gil, Alfonso;
García-Martínez, José;
Pelechano, Vicent;
Muñoz-Centeno, María de la Cruz;
Geli, Vincent;
Pérez-Ortín, José E.;
Chávez, Sebastián

Publication type:

Article

The role of the universally conserved A2450–C2063 base pair in the ribosomal peptidyl transferase center.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 14, p. 4844, doi. 10.1093/nar/gkq213

By:

Chirkova, Anna;
Erlacher, Matthias D.;
Clementi, Nina;
Zywicki, Marek;
Aigner, Michaela;
Polacek, Norbert

Publication type:

Article

Nucleolin binds to a subset of selenoprotein mRNAs and regulates their expression.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 14, p. 4807, doi. 10.1093/nar/gkq247

By:

Miniard, Angela C.;
Middleton, Lisa M.;
Budiman, Michael E.;
Gerber, Carri A.;
Driscoll, Donna M.

Publication type:

Article

Equilibrium conformational dynamics in an RNA tetraloop from massively parallel molecular dynamics.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 14, p. 4856, doi. 10.1093/nar/gkq134

By:

DePaul, Allison J.;
Thompson, Erik J.;
Patel, Sarav S.;
Haldeman, Kristin;
Sorin, Eric J.

Publication type:

Article

Ratiometric bimolecular beacons for the sensitive detection of RNA in single living cells.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 14, p. e148, doi. 10.1093/nar/gkq436

By:

Chen, Antony K.;
Davydenko, Olga;
Behlke, Mark A.;
Tsourkas, Andrew

Publication type:

Article

Large-scale detection and analysis of RNA editing in grape mtDNA by RNA deep-sequencing.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 14, p. 4755, doi. 10.1093/nar/gkq202

By:

Picardi, Ernesto;
Horner, David S.;
Chiara, Matteo;
Schiavon, Riccardo;
Valle, Giorgio;
Pesole, Graziano

Publication type:

Article

DNA-binding properties of T4 UvsY recombination mediator protein: polynucleotide wrapping promotes high-affinity binding to single-stranded DNA.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 14, p. 4821

By:

Xu, Hang;
Beernink, Hans T. H.;
Morrical, Scott W.

Publication type:

Article

Nucleic Acids Research.

Published in:: Nucleic Acids Research, 2010, v. 38, n. 14, p. ii, doi. 10.1093/nar/gkq744
Publication type:: Article

A structural-alphabet-based strategy for finding structural motifs across protein families.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 14, p. e150, doi. 10.1093/nar/gkq478

By:

Wu, Chih Yuan;
Chen, Yao Chi;
Lim, Carmay

Publication type:

Article

Subscriptions.

Published in:: Nucleic Acids Research, 2010, v. 38, n. 14, p. iii, doi. 10.1093/nar/gkq746
Publication type:: Article

The siRNA sequence and guide strand overhangs are determinants of in vivo duration of silencing.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 14, p. 4788, doi. 10.1093/nar/gkq206

By:

Strapps, Walter R.;
Pickering, Victoria;
Muiru, Gladys T.;
Rice, Julie;
Orsborn, Stacey;
Polisky, Barry A.;
Sachs, Alan;
Bartz, Steven R.

Publication type:

Article