Works matching IS 03051048 AND DT 2010 AND VI 38 AND IP 10

Results: 40

Force spectroscopy and fluorescence microscopy of dsDNA–YOYO-1 complexes: implications for the structure of dsDNA in the overstretching region.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 10, p. 3423, doi. 10.1093/nar/gkq034

By:

Murade, Chandrashekhar U.;
Subramaniam, Vinod;
Otto, Cees;
Bennink, Martin L.

Publication type:

Article

Structure and DNA binding activity of the mouse condensin hinge domain highlight common and diverse features of SMC proteins.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 10, p. 3454, doi. 10.1093/nar/gkq038

By:

Griese, Julia J.;
Witte, Gregor;
Hopfner, Karl-Peter

Publication type:

Article

Overlapping splicing regulatory motifs—combinatorial effects on splicing.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 10, p. 3318, doi. 10.1093/nar/gkq005

By:

Goren, Amir;
Kim, Eddo;
Amit, Maayan;
Vaknin, Keren;
Kfir, Nir;
Ram, Oren;
Ast, Gil

Publication type:

Article

RNPomics: Defining the ncRNA transcriptome by cDNA library generation from ribonucleo-protein particles.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 10, p. e113, doi. 10.1093/nar/gkq057

By:

Rederstorff, Mathieu;
Bernhart, Stephan H.;
Tanzer, Andrea;
Zywicki, Marek;
Perfler, Katrin;
Lukasser, Melanie;
Hofacker, Ivo L.;
Hüttenhofer, Alexander

Publication type:

Article

NMR structure and dynamics of the Specifier Loop domain from the Bacillus subtilis tyrS T box leader RNA.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 10, p. 3388, doi. 10.1093/nar/gkq020

By:

Wang, Jiachen;
Henkin, Tina M.;
Nikonowicz, Edward P.

Publication type:

Article

Prediction of alternative isoforms from exon expression levels in RNA-Seq experiments.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 10, p. e112, doi. 10.1093/nar/gkq041

By:

Richard, Hugues;
Schulz, Marcel H.;
Sultan, Marc;
Nürnberger, Asja;
Schrinner, Sabine;
Balzereit, Daniela;
Dagand, Emilie;
Rasche, Axel;
Lehrach, Hans;
Vingron, Martin;
Haas, Stefan A.;
Yaspo, Marie-Laure

Publication type:

Article

Deep SAGE analysis of the Caenorhabditis elegans transcriptome.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 10, p. 3252, doi. 10.1093/nar/gkq035

By:

Ruzanov, Peter;
Riddle, Donald L.

Publication type:

Article

A novel antisense RNA regulates at transcriptional level the virulence gene icsA of Shigella flexneri.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 10, p. 3362, doi. 10.1093/nar/gkq025

By:

Giangrossi, Mara;
Prosseda, Gianni;
Tran, Chi Nhan;
Brandi, Anna;
Colonna, Bianca;
Falconi, Maurizio

Publication type:

Article

Evolutionary conservation of residues in vertebrate DNA polymerase N conferring low fidelity and bypass activity.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 10, p. 3233, doi. 10.1093/nar/gkq048

By:

Takata, Kei-ichi;
Arana, Mercedes E.;
Seki, Mineaki;
Kunkel, Thomas A.;
Wood, Richard D.

Publication type:

Article

Subscriptions.

Published in:: Nucleic Acids Research, 2010, v. 38, n. 10, p. iii, doi. 10.1093/nar/gkq549
Publication type:: Article

Operon structure of Staphylococcus aureus.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 10, p. 3263, doi. 10.1093/nar/gkq058

By:

ten Broeke-Smits, Nicole J. P.;
Pronk, Tessa E.;
Jongerius, Ilse;
Bruning, Oskar;
Wittink, Floyd R.;
Breit, Timo M.;
van Strijp, Jos A. G.;
Fluit, Ad C.;
Boel, C. H. Edwin

Publication type:

Article

Binding of NF-kappaB p65 subunit to the promoter elements is involved in LPS-induced transactivation of miRNA genes in human biliary epithelial cells.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 10, p. 3222, doi. 10.1093/nar/gkq056

By:

Zhou, Rui;
Hu, Guoku;
Gong, Ai-Yu;
Chen, Xian-Ming

Publication type:

Article

Arginine methylation of REF/ALY promotes efficient handover of mRNA to TAP/NXF1.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 10, p. 3351, doi. 10.1093/nar/gkq033

By:

Hung, Ming-Lung;
Hautbergue, Guillaume M.;
Snijders, Ambrosius P. L.;
Dickman, Mark J.;
Wilson, Stuart A.

Publication type:

Article

Minimizing off-target signals in RNA fluorescent in situ hybridization.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 10, p. e115, doi. 10.1093/nar/gkq042

By:

Arvey, Aaron;
Hermann, Anita;
Hsia, Cheryl C.;
Ie, Eugene;
Freund, Yoav;
McGinnis, William

Publication type:

Article

Crystal structures of Saccharomyces cerevisiae tryptophanyl-tRNA synthetase: new insights into the mechanism of tryptophan activation and implications for anti-fungal drug design.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 10, p. 3399, doi. 10.1093/nar/gkp1254

By:

Zhou, Minyun;
Dong, Xianchi;
Shen, Ning;
Zhong, Chen;
Ding, Jianping

Publication type:

Article

TRAP150 activates pre-mRNA splicing and promotes nuclear mRNA degradation.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 10, p. 3340, doi. 10.1093/nar/gkq017

By:

Lee, Kuo-Ming;
Hsu, Ia-Wen;
Tarn, Woan-Yuh

Publication type:

Article

Preparation and topology of the Mediator middle module.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 10, p. 3186, doi. 10.1093/nar/gkq029

By:

Koschubs, Tobias;
Lorenzen, Kristina;
Baumli, Sonja;
Sandström, Saana;
Heck, Albert J. R.;
Cramer, Patrick

Publication type:

Article

Recurrent RNA motifs as probes for studying RNA-protein interactions in the ribosome.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 10, p. 3441, doi. 10.1093/nar/gkq031

By:

Gagnon, Matthieu G.;
Boutorine, Yury I.;
Steinberg, Sergey V.

Publication type:

Article

Characteristics of DNA-binding proteins determine the biological sensitivity to high-linear energy transfer radiation.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 10, p. 3245, doi. 10.1093/nar/gkq069

By:

Wang, Hongyan;
Zhang, Xiangming;
Wang, Ping;
Yu, Xiaoyan;
Essers, Jeroen;
Chen, David;
Kanaar, Roland;
Takeda, Shunichi;
Wang, Ya

Publication type:

Article

Leishmania actin binds and nicks kDNA as well as inhibits decatenation activity of type II topoisomerase.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 10, p. 3308, doi. 10.1093/nar/gkq051

By:

Kapoor, Prabodh;
Kumar, Ashutosh;
Naik, Rangeetha;
Ganguli, Munia;
Siddiqi, Mohammad I.;
Sahasrabuddhe, Amogh A.;
Gupta, Chhitar M.

Publication type:

Article

Structure of Smad1 MH1/DNA complex reveals distinctive rearrangements of BMP and TGF-β effectors.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 10, p. 3477, doi. 10.1093/nar/gkq046

By:

BabuRajendran, Nithya;
Palasingam, Paaventhan;
Narasimhan, Kamesh;
Sun, Wenjie;
Prabhakar, Shyam;
Jauch, Ralf;
Kolatkar, Prasanna R.

Publication type:

Article

Assessing serotonin receptor mRNA editing frequency by a novel ultra high-throughput sequencing method.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 10, p. e118, doi. 10.1093/nar/gkq107

By:

Abbas, Atheir I.;
Urban, Daniel J.;
Jensen, Niels H.;
Farrell, Martilias S.;
Kroeze, Wesley K.;
Mieczkowski, Piotr;
Wang, Zefeng;
Roth, Bryan L.

Publication type:

Article

Establishment of an in vitro trans-splicing system in Trypanosoma brucei that requires endogenous spliced leader RNA.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 10, p. e114, doi. 10.1093/nar/gkq065

By:

Shaked, Hadassa;
Wachtel, Chaim;
Tulinski, Pawel;
Yahia, Nasreen Hag;
Barda, Omer;
Darzynkiewicz, Edward;
Nilsen, Timothy W.;
Michaeli, Shulamit

Publication type:

Article

NIR, an inhibitor of histone acetyltransferases, regulates transcription factor TAp63 and is controlled by the cell cycle.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 10, p. 3159, doi. 10.1093/nar/gkq016

By:

Heyne, Kristina;
Willnecker, Vivienne;
Schneider, Julia;
Conrad, Marcel;
Raulf, Nina;
Schüle, Roland;
Roemer, Klaus

Publication type:

Article

Optimizing copy number variation analysis using genome-wide short sequence oligonucleotide arrays.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 10, p. 3275, doi. 10.1093/nar/gkq073

By:

Oldridge, Derek A.;
Banerjee, Samprit;
Setlur, Sunita R.;
Sboner, Andrea;
Demichelis, Francesca

Publication type:

Article

Boosting the prediction and understanding of DNA-binding domains from sequence.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 10, p. 3149, doi. 10.1093/nar/gkq061

By:

Langlois, Robert E.;
Lu, Hui

Publication type:

Article

The DNA binding CXC domain of MSL2 is required for faithful targeting the Dosage Compensation Complex to the X chromosome.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 10, p. 3209, doi. 10.1093/nar/gkq026

By:

Fauth, Torsten;
Müller-Planitz, Felix;
König, Cornelia;
Straub, Tobias;
Becker, Peter B.

Publication type:

Article

The structure of DdrB from Deinococcus: a new fold for single-stranded DNA binding proteins.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 10, p. 3432, doi. 10.1093/nar/gkq036

By:

Sugiman-Marangos, Seiji;
Junop, Murray S.

Publication type:

Article

Teolenn: an efficient and customizable workflow to design high-quality probes for microarray experiments.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 10, p. e117, doi. 10.1093/nar/gkq110

By:

Jourdren, Laurent;
Duclos, Aurélie;
Brion, Christian;
Portnoy, Thomas;
Mathis, Hugues;
Margeot, Antoine;
Le Crom, Stéphane

Publication type:

Article

A measure of bending in nucleic acids structures applied to A-tract DNA.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 10, p. 3414

By:

Lankaš, F.;
Špačková, N.;
Moakher, M.;
Enkhbayar, P.;
Šponer, J.

Publication type:

Article

Modifications in host cell cytoskeleton structure and function mediated by intracellular HIV-1 Tat protein are greatly dependent on the second coding exon.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 10, p. 3287, doi. 10.1093/nar/gkq037

By:

López-Huertas, M. R.;
Callejas, S.;
Abia, D.;
Mateos, E.;
Dopazo, A.;
Alcamí, J.;
Coiras, M.

Publication type:

Article

Strong dependence between functional domains in a dual-function snoRNA infers coupling of rRNA processing and modification events.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 10, p. 3376, doi. 10.1093/nar/gkq043

By:

Liang, Xue-hai;
Liu, Qing;
Liu, Quansheng;
King, Thomas H.;
Fournier, Maurille J.

Publication type:

Article

Identification of antisense RNA stem–loops that inhibit RNA–protein interactions using a bacterial reporter system.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 10, p. 3489, doi. 10.1093/nar/gkq027

By:

Yano, Akiko;
Horiya, Satoru;
Minami, Takako;
Haneda, Eri;
Ikeda, Makiko;
Harada, Kazuo

Publication type:

Article

Evolutionary optimization of a modular ligase ribozyme: a small catalytic unit and a hairpin motif masking an element that could form an inactive structure.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 10, p. 3328, doi. 10.1093/nar/gkq018

By:

Fujita, Yuki;
Furuta, Hiroyuki;
Ikawa, Yoshiya

Publication type:

Article

Intronic elements in the Na+/I- symporter gene (NIS) interact with retinoic acid receptors and mediate initiation of transcription.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 10, p. 3172, doi. 10.1093/nar/gkq023

By:

Alotaibi, Hani;
Yaman, Elif;
Salvatore, Domenico;
Di Dato, Valeria;
Telkoparan, Pelin;
Di Lauro, Roberto;
Tazebay, Uygar H.

Publication type:

Article

Promoter chromatin remodeling of immediate-early genes is mediated through H3 phosphorylation at either serine 28 or 10 by the MSK1 multi-protein complex.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 10, p. 3196, doi. 10.1093/nar/gkq030

By:

Drobic, Bojan;
Pérez-Cadahía, Beatriz;
Yu, Jenny;
Kung, Sam Kam-Pun;
Davie, James R.

Publication type:

Article

Accurate SNP and mutation detection by targeted custom microarray-based genomic enrichment of short-fragment sequencing libraries.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 10, p. e116, doi. 10.1093/nar/gkq072

By:

Mokry, Michal;
Feitsma, Harma;
Nijman, Isaac J.;
de Bruijn, Ewart;
van der Zaag, Pieter J.;
Guryev, Victor;
Cuppen, Edwin

Publication type:

Article

Nucleic Acids Research.

Published in:: Nucleic Acids Research, 2010, v. 38, n. 10, p. ii, doi. 10.1093/nar/gkq539
Publication type:: Article

Structural determinants of specific DNA-recognition by the THAP zinc finger.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 10, p. 3466, doi. 10.1093/nar/gkq053

By:

Campagne, Sébastien;
Saurel, Olivier;
Gervais, Virginie;
Milon, Alain

Publication type:

Article

Nucleic Acids Research.

Published in:: Nucleic Acids Research, 2010, v. 38, n. 10, p. i, doi. 10.1093/nar/gkq289
Publication type:: Article