Works matching IS 03051048 AND DT 2009 AND VI 37 AND IP suppl_1

Results: 184

Update of the Diatom EST Database: a new tool for digital transcriptomics.

Published in:

Nucleic Acids Research, 2009, v. 37, n. suppl_1, p. D1001, doi. 10.1093/nar/gkn905

By:

Maheswari, Uma;
Mock, Thomas;
Armbrust, E. Virginia;
Bowler, Chris

Publication type:

Article

The YH database: the first Asian diploid genome database.

Published in:

Nucleic Acids Research, 2009, v. 37, n. suppl_1, p. D1025

By:

Li, Guoqing;
Ma, Lijia;
Song, Chao;
Yang, Zhentao;
Wang, Xiulan;
Huang, Hui;
Li, Yingrui;
Li, Ruiqiang;
Zhang, Xiuqing;
Yang, Huanming;
Wang, Jian;
Wang, Jun

Publication type:

Article

Nucleic Acids Research annual Database Issue and the NAR online Molecular Biology Database Collection in 2009.

Published in:

Nucleic Acids Research, 2009, v. 37, n. suppl_1, p. D1, doi. 10.1093/nar/gkn942

By:

Galperin, Michael Y.;
Cochrane, Guy R.

Publication type:

Article

The HuRef Browser: a web resource for individual human genomics.

Published in:

Nucleic Acids Research, 2009, v. 37, n. suppl_1, p. D1018, doi. 10.1093/nar/gkn939

By:

Axelrod, Nelson;
Lin, Yuan;
Ng, Pauline C.;
Stockwell, Timothy B.;
Crabtree, Jonathan;
Huang, Jiaqi;
Kirkness, Ewen;
Strausberg, Robert L.;
Frazier, Marvin E.;
Venter, J. Craig;
Kravitz, Saul;
Levy, Samuel

Publication type:

Article

Human Protein Reference Database—2009 update.

Published in:

Nucleic Acids Research, 2009, v. 37, n. suppl_1, p. D767, doi. 10.1093/nar/gkn892

By:

Keshava Prasad, T. S.;
Goel, Renu;
Kandasamy, Kumaran;
Keerthikumar, Shivakumar;
Kumar, Sameer;
Mathivanan, Suresh;
Telikicherla, Deepthi;
Raju, Rajesh;
Shafreen, Beema;
Venugopal, Abhilash;
Balakrishnan, Lavanya;
Marimuthu, Arivusudar;
Banerjee, Sutopa;
Somanathan, Devi S.;
Sebastian, Aimy;
Rani, Sandhya;
Ray, Somak;
Harrys Kishore, C. J.;
Kanth, Sashi;
Ahmed, Mukhtar

Publication type:

Article

ArrayExpress update—from an archive of functional genomics experiments to the atlas of gene expression.

Published in:

Nucleic Acids Research, 2009, v. 37, n. suppl_1, p. D868, doi. 10.1093/nar/gkn889

By:

Parkinson, Helen;
Kapushesky, Misha;
Kolesnikov, Nikolay;
Rustici, Gabriella;
Shojatalab, Mohammad;
Abeygunawardena, Niran;
Berube, Hugo;
Dylag, Miroslaw;
Emam, Ibrahim;
Farne, Anna;
Holloway, Ele;
Lukk, Margus;
Malone, James;
Mani, Roby;
Pilicheva, Ekaterina;
Rayner, Tim F.;
Rezwan, Faisal;
Sharma, Anjan;
Williams, Eleanor;
Bradley, Xiangqun Zheng

Publication type:

Article

SpBase: the sea urchin genome database and web site.

Published in:

Nucleic Acids Research, 2009, v. 37, n. suppl_1, p. D750, doi. 10.1093/nar/gkn887

By:

Cameron, R. Andrew;
Samanta, Manoj;
Yuan, Autumn;
He, Dong;
Davidson, Eric

Publication type:

Article

The Mouse Genome Database genotypes::phenotypes.

Published in:

Nucleic Acids Research, 2009, v. 37, n. suppl_1, p. D712

By:

Blake, Judith A.;
Bult, Carol J.;
Eppig, Janan T.;
Kadin, James A.;
Richardson, Joel E.

Publication type:

Article

Influenza sequence and epitope database.

Published in:

Nucleic Acids Research, 2009, v. 37, n. suppl_1, p. D423, doi. 10.1093/nar/gkn881

By:

Yang, Seok;
Lee, Joo-Yeon;
Lee, Joon Seung;
Mitchell, Wayne P.;
Oh, Hee-Bok;
Kang, Chun;
Kim, Kyung Hyun

Publication type:

Article

The Ribosomal Database Project: improved alignments and new tools for rRNA analysis.

Published in:

Nucleic Acids Research, 2009, v. 37, n. suppl_1, p. D141, doi. 10.1093/nar/gkn879

By:

Cole, J. R.;
Wang, Q.;
Cardenas, E.;
Fish, J.;
Chai, B.;
Farris, R. J.;
Kulam-Syed-Mohideen, A. S.;
McGarrell, D. M.;
Marsh, T.;
Garrity, G. M.;
Tiedje, J. M.

Publication type:

Article

CleanEx: new data extraction and merging tools based on MeSH term annotation.

Published in:

Nucleic Acids Research, 2009, v. 37, n. suppl_1, p. D880, doi. 10.1093/nar/gkn878

By:

Praz, Viviane;
Bucher, Philipp

Publication type:

Article

The CATH classification revisited—architectures reviewed and new ways to characterize structural divergence in superfamilies.

Published in:

Nucleic Acids Research, 2009, v. 37, n. suppl_1, p. D310, doi. 10.1093/nar/gkn877

By:

Cuff, Alison L.;
Sillitoe, Ian;
Lewis, Tony;
Redfern, Oliver C.;
Garratt, Richard;
Thornton, Janet;
Orengo, Christine A.

Publication type:

Article

Aspergillus Genomes and the Aspergillus Cloud.

Published in:

Nucleic Acids Research, 2009, v. 37, n. suppl_1, p. D509, doi. 10.1093/nar/gkn876

By:

Mabey Gilsenan, Jane E.;
Atherton, Graham;
Bartholomew, Jennifer;
Giles, Peter F.;
Attwood, Teresa K.;
Denning, David W.;
Bowyer, Paul

Publication type:

Article

The UCSC Genome Browser Database: update 2009.

Published in:

Nucleic Acids Research, 2009, v. 37, n. suppl_1, p. D755, doi. 10.1093/nar/gkn875

By:

Kuhn, R. M.;
Karolchik, D.;
Zweig, A. S.;
Wang, T.;
Smith, K. E.;
Rosenbloom, K. R.;
Rhead, B.;
Raney, B. J.;
Pohl, A.;
Pheasant, M.;
Meyer, L.;
Hsu, F.;
Hinrichs, A. S.;
Harte, R. A.;
Giardine, B.;
Fujita, P.;
Diekhans, M.;
Dreszer, T.;
Clawson, H.;
Barber, G. P.

Publication type:

Article

TcSNP: a database of genetic variation in Trypanosoma cruzi.

Published in:

Nucleic Acids Research, 2009, v. 37, n. suppl_1, p. D544, doi. 10.1093/nar/gkn874

By:

Ackermann, Alejandro A.;
Carmona, Santiago J.;
Agüero, Fernán

Publication type:

Article

Arabidopsis Hormone Database: a comprehensive genetic and phenotypic information database for plant hormone research in Arabidopsis.

Published in:

Nucleic Acids Research, 2009, v. 37, n. suppl_1, p. D975, doi. 10.1093/nar/gkn873

By:

Peng, Zhi-yu;
Zhou, Xin;
Li, Linchuan;
Yu, Xiangchun;
Li, Hongjiang;
Jiang, Zhiqiang;
Cao, Guangyu;
Bai, Mingyi;
Wang, Xingchun;
Jiang, Caifu;
Lu, Haibin;
Hou, Xianhui;
Qu, Lijia;
Wang, Zhiyong;
Zuo, Jianru;
Fu, Xiangdong;
Su, Zhen;
Li, Songgang;
Guo, Hongwei

Publication type:

Article

Human Gene and Protein Database (HGPD): a novel database presenting a large quantity of experiment-based results in human proteomics.

Published in:

Nucleic Acids Research, 2009, v. 37, n. suppl_1, p. D762, doi. 10.1093/nar/gkn872

By:

Maruyama, Yukio;
Wakamatsu, Ai;
Kawamura, Yoshifumi;
Kimura, Kouichi;
Yamamoto, Jun-ichi;
Nishikawa, Tetsuo;
Kisu, Yasutomo;
Sugano, Sumio;
Goshima, Naoki;
Isogai, Takao;
Nomura, Nobuo

Publication type:

Article

PIPs: human protein–protein interaction prediction database.

Published in:

Nucleic Acids Research, 2009, v. 37, n. suppl_1, p. D651, doi. 10.1093/nar/gkn870

By:

McDowall, Mark D.;
Scott, Michelle S.;
Barton, Geoffrey J.

Publication type:

Article

AS-ALPS: a database for analyzing the effects of alternative splicing on protein structure, interaction and network in human and mouse.

Published in:

Nucleic Acids Research, 2009, v. 37, n. suppl_1, p. D305, doi. 10.1093/nar/gkn869

By:

Shionyu, Masafumi;
Yamaguchi, Akihiro;
Shinoda, Kazuki;
Takahashi, Ken-ichi;
Go, Mitiko

Publication type:

Article

PDBsum new things.

Published in:

Nucleic Acids Research, 2009, v. 37, n. suppl_1, p. D355, doi. 10.1093/nar/gkn860

By:

Laskowski, Roman A.

Publication type:

Article

Bionemo: molecular information on biodegradation metabolism.

Published in:

Nucleic Acids Research, 2009, v. 37, n. suppl_1, p. D598, doi. 10.1093/nar/gkn864

By:

Carbajosa, Guillermo;
Trigo, Almudena;
Valencia, Alfonso;
Cases, Ildefonso

Publication type:

Article

Reactome knowledgebase of human biological pathways and processes.

Published in:

Nucleic Acids Research, 2009, v. 37, n. suppl_1, p. D619, doi. 10.1093/nar/gkn863

By:

Matthews, Lisa;
Gopinath, Gopal;
Gillespie, Marc;
Caudy, Michael;
Croft, David;
de Bono, Bernard;
Garapati, Phani;
Hemish, Jill;
Hermjakob, Henning;
Jassal, Bijay;
Kanapin, Alex;
Lewis, Suzanna;
Mahajan, Shahana;
May, Bruce;
Schmidt, Esther;
Vastrik, Imre;
Wu, Guanming;
Birney, Ewan;
Stein, Lincoln;
D’Eustachio, Peter

Publication type:

Article

The Transporter Classification Database: recent advances.

Published in:

Nucleic Acids Research, 2009, v. 37, n. suppl_1, p. D274, doi. 10.1093/nar/gkn862

By:

Saier, Milton H.;
Yen, Ming Ren;
Noto, Keith;
Tamang, Dorjee G.;
Elkan, Charles

Publication type:

Article

Pseudomonas Genome Database: facilitating user-friendly, comprehensive comparisons of microbial genomes.

Published in:

Nucleic Acids Research, 2009, v. 37, n. suppl_1, p. D483, doi. 10.1093/nar/gkn861

By:

Winsor, Geoffrey L.;
Van Rossum, Thea;
Lo, Raymond;
Khaira, Bhavjinder;
Whiteside, Matthew D.;
Hancock, Robert E. W.;
Brinkman, Fiona S. L.

Publication type:

Article

Minimotif miner 2nd release: a database and web system for motif search.

Published in:

Nucleic Acids Research, 2009, v. 37, n. suppl_1, p. D185, doi. 10.1093/nar/gkn865

By:

Rajasekaran, Sanguthevar;
Balla, Sudha;
Gradie, Patrick;
Gryk, Michael R.;
Kadaveru, Krishna;
Kundeti, Vamsi;
Maciejewski, Mark W.;
Mi, Tian;
Rubino, Nicholas;
Vyas, Jay;
Schiller, Martin R.

Publication type:

Article

Génolevures: protein families and synteny among complete hemiascomycetous yeast proteomes and genomes.

Published in:

Nucleic Acids Research, 2009, v. 37, n. suppl_1, p. D550, doi. 10.1093/nar/gkn859

By:

Sherman, David J.;
Martin, Tiphaine;
Nikolski, Macha;
Cayla, Cyril;
Souciet, Jean-Luc;
Durrens, Pascal

Publication type:

Article

DEG 5.0, a database of essential genes in both prokaryotes and eukaryotes.

Published in:

Nucleic Acids Research, 2009, v. 37, n. suppl_1, p. D455, doi. 10.1093/nar/gkn858

By:

Zhang, Ren;
Lin, Yan

Publication type:

Article

VectorBase: a data resource for invertebrate vector genomics.

Published in:

Nucleic Acids Research, 2009, v. 37, n. suppl_1, p. D583, doi. 10.1093/nar/gkn857

By:

Lawson, Daniel;
Arensburger, Peter;
Atkinson, Peter;
Besansky, Nora J.;
Bruggner, Robert V.;
Butler, Ryan;
Campbell, Kathryn S.;
Christophides, George K.;
Christley, Scott;
Dialynas, Emmanuel;
Hammond, Martin;
Hill, Catherine A.;
Konopinski, Nathan;
Lobo, Neil F.;
MacCallum, Robert M.;
Madey, Greg;
Megy, Karine;
Meyer, Jason;
Redmond, Seth;
Severson, David W.

Publication type:

Article

Full-Malaria/Parasites and Full-Arthropods: databases of full-length cDNAs of parasites and arthropods, update 2009.

Published in:

Nucleic Acids Research, 2009, v. 37, n. suppl_1, p. D520, doi. 10.1093/nar/gkn856

By:

Wakaguri, Hiroyuki;
Suzuki, Yutaka;
Katayama, Toshiaki;
Kawashima, Shuichi;
Kibukawa, Eri;
Hiranuka, Kazushi;
Sasaki, Masahide;
Sugano, Sumio;
Watanabe, Junichi

Publication type:

Article

The GTOP database in 2009: updated content and novel features to expand and deepen insights into protein structures and functions.

Published in:

Nucleic Acids Research, 2009, v. 37, n. suppl_1, p. D333, doi. 10.1093/nar/gkn855

By:

Fukuchi, Satoshi;
Homma, Keiichi;
Sakamoto, Shigetaka;
Sugawara, Hideaki;
Tateno, Yoshio;
Gojobori, Takashi;
Nishikawa, Ken

Publication type:

Article

BloodExpress: a database of gene expression in mouse haematopoiesis.

Published in:

Nucleic Acids Research, 2009, v. 37, n. suppl_1, p. D873, doi. 10.1093/nar/gkn854

By:

Miranda-Saavedra, Diego;
De, Subhajyoti;
Trotter, Matthew W.;
Teichmann, Sarah A.;
Göttgens, Berthold

Publication type:

Article

EcID. A database for the inference of functional interactions in E. coli.

Published in:

Nucleic Acids Research, 2009, v. 37, n. suppl_1, p. D629, doi. 10.1093/nar/gkn853

By:

Andres Leon, Eduardo;
Ezkurdia, Iakes;
García, Beatriz;
Valencia, Alfonso;
Juan, David

Publication type:

Article

sRNAMap: genomic maps for small non-coding RNAs, their regulators and their targets in microbial genomes.

Published in:

Nucleic Acids Research, 2009, v. 37, n. suppl_1, p. D150, doi. 10.1093/nar/gkn852

By:

Huang, Hsi-Yuan;
Chang, Heng-Yi;
Chou, Chih-Hung;
Tseng, Ching-Ping;
Ho, Shinn-Ying;
Yang, Chi-Dung;
Ju, Yih-Wei;
Huang, Hsien-Da

Publication type:

Article

Ensembl 2009.

Published in:

Nucleic Acids Research, 2009, v. 37, n. suppl_1, p. D690, doi. 10.1093/nar/gkn828

By:

Hubbard, T. J. P.;
Aken, B. L.;
Ayling, S.;
Ballester, B.;
Beal, K.;
Bragin, E.;
Brent, S.;
Chen, Y.;
Clapham, P.;
Clarke, L.;
Coates, G.;
Fairley, S.;
Fitzgerald, S.;
Fernandez-Banet, J.;
Gordon, L.;
Graf, S.;
Haider, S.;
Hammond, M.;
Holland, R.;
Howe, K.

Publication type:

Article

miRecords: an integrated resource for microRNA–target interactions.

Published in:

Nucleic Acids Research, 2009, v. 37, n. suppl_1, p. D105, doi. 10.1093/nar/gkn851

By:

Xiao, Feifei;
Zuo, Zhixiang;
Cai, Guoshuai;
Kang, Shuli;
Gao, Xiaolian;
Li, Tongbin

Publication type:

Article

Sys-BodyFluid: a systematical database for human body fluid proteome research.

Published in:

Nucleic Acids Research, 2009, v. 37, n. suppl_1, p. D907

By:

Li, Su-Jun;
Peng, Mao;
Li, Hong;
Liu, Bo-Shu;
Wang, Chuan;
Wu, Jia-Rui;
Li, Yi-Xue;
Zeng, Rong

Publication type:

Article

Protein segment finder: an online search engine for segment motifs in the PDB.

Published in:

Nucleic Acids Research, 2009, v. 37, n. suppl_1, p. D224, doi. 10.1093/nar/gkn833

By:

Samson, Abraham O.;
Levitt, Michael

Publication type:

Article

SysPIMP: the web-based systematical platform for identifying human disease-related mutated sequences from mass spectrometry.

Published in:

Nucleic Acids Research, 2009, v. 37, n. suppl_1, p. D913

By:

Xi, Hong;
Park, Jongsun;
Ding, Guohui;
Lee, Yong-Hwan;
Li, Yixue

Publication type:

Article

UniHI 4: new tools for query, analysis and visualization of the human protein–protein interactome.

Published in:

Nucleic Acids Research, 2009, v. 37, n. suppl_1, p. D657, doi. 10.1093/nar/gkn841

By:

Chaurasia, Gautam;
Malhotra, Soniya;
Russ, Jenny;
Schnoegl, Sigrid;
Hänig, Christian;
Wanker, Erich E.;
Futschik, Matthias E.

Publication type:

Article

SuperToxic: a comprehensive database of toxic compounds.

Published in:

Nucleic Acids Research, 2009, v. 37, n. suppl_1, p. D295, doi. 10.1093/nar/gkn850

By:

Schmidt, Ulrike;
Struck, Swantje;
Gruening, Bjoern;
Hossbach, Julia;
Jaeger, Ines S.;
Parol, Roza;
Lindequist, Ulrike;
Teuscher, Eberhard;
Preissner, Robert

Publication type:

Article

The Rat Genome Database 2009: variation, ontologies and pathways.

Published in:

Nucleic Acids Research, 2009, v. 37, n. suppl_1, p. D744

By:

Dwinell, Melinda R.;
Worthey, Elizabeth A.;
Shimoyama, Mary;
Bakir-Gungor, Burcu;
DePons, Jeffrey;
Laulederkind, Stanley;
Lowry, Timothy;
Nigram, Rajni;
Petri, Victoria;
Smith, Jennifer;
Stoddard, Alexander;
Twigger, Simon N.;
Jacob, Howard J.

Publication type:

Article

MoKCa database—mutations of kinases in cancer.

Published in:

Nucleic Acids Research, 2009, v. 37, n. suppl_1, p. D824, doi. 10.1093/nar/gkn832

By:

Richardson, Christopher J.;
Gao, Qiong;
Mitsopoulous, Costas;
Zvelebil, Marketa;
Pearl, Laurence H.;
Pearl, Frances M. G.

Publication type:

Article

CDD: specific functional annotation with the Conserved Domain Database.

Published in:

Nucleic Acids Research, 2009, v. 37, n. suppl_1, p. D205, doi. 10.1093/nar/gkn845

By:

Marchler-Bauer, Aron;
Anderson, John B.;
Chitsaz, Farideh;
Derbyshire, Myra K.;
DeWeese-Scott, Carol;
Fong, Jessica H.;
Geer, Lewis Y.;
Geer, Renata C.;
Gonzales, Noreen R.;
Gwadz, Marc;
He, Siqian;
Hurwitz, David I.;
Jackson, John D.;
Ke, Zhaoxi;
Lanczycki, Christopher J.;
Liebert, Cynthia A.;
Liu, Chunlei;
Lu, Fu;
Lu, Shennan;
Marchler, Gabriele H.

Publication type:

Article

dictyBase—a Dictyostelium bioinformatics resource update.

Published in:

Nucleic Acids Research, 2009, v. 37, n. suppl_1, p. D515, doi. 10.1093/nar/gkn844

By:

Fey, Petra;
Gaudet, Pascale;
Curk, Tomaz;
Zupan, Blaz;
Just, Eric M.;
Basu, Siddhartha;
Merchant, Sohel N.;
Bushmanova, Yulia A.;
Shaulsky, Gad;
Kibbe, Warren A.;
Chisholm, Rex L.

Publication type:

Article

metaTIGER: a metabolic evolution resource.

Published in:

Nucleic Acids Research, 2009, v. 37, n. suppl_1, p. D531, doi. 10.1093/nar/gkn826

By:

Whitaker, John W.;
Letunic, Ivica;
McConkey, Glenn A.;
Westhead, David R.

Publication type:

Article

APD2: the updated antimicrobial peptide database and its application in peptide design.

Published in:

Nucleic Acids Research, 2009, v. 37, n. suppl_1, p. D933, doi. 10.1093/nar/gkn823

By:

Wang, Guangshun;
Li, Xia;
Wang, Zhe

Publication type:

Article

VIPERdb2: an enhanced and web API enabled relational database for structural virology.

Published in:

Nucleic Acids Research, 2009, v. 37, n. suppl_1, p. D436, doi. 10.1093/nar/gkn840

By:

Carrillo-Tripp, Mauricio;
Shepherd, Craig M.;
Borelli, Ian A.;
Venkataraman, Sangita;
Lander, Gabriel;
Natarajan, Padmaja;
Johnson, John E.;
Brooks, Charles L.;
Reddy, Vijay S.

Publication type:

Article

Update of KDBI: Kinetic Data of Bio-molecular Interaction database.

Published in:

Nucleic Acids Research, 2009, v. 37, n. suppl_1, p. D636, doi. 10.1093/nar/gkn839

By:

Kumar, Pankaj;
Han, B. C.;
Shi, Z.;
Jia, J.;
Wang, Y. P.;
Zhang, Y. T.;
Liang, L.;
Liu, Q. F.;
Ji, Z. L.;
Chen, Y. Z.

Publication type:

Article

IMGT®, the international ImMunoGeneTics information system®.

Published in:

Nucleic Acids Research, 2009, v. 37, n. suppl_1, p. D1006, doi. 10.1093/nar/gkn838

By:

Lefranc, Marie-Paule;
Giudicelli, Véronique;
Ginestoux, Chantal;
Jabado-Michaloud, Joumana;
Folch, Géraldine;
Bellahcene, Fatena;
Wu, Yan;
Gemrot, Elodie;
Brochet, Xavier;
Lane, Jérôme;
Regnier, Laetitia;
Ehrenmann, François;
Lefranc, Gérard;
Duroux, Patrice

Publication type:

Article

PRODORIC (release 2009): a database and tool platform for the analysis of gene regulation in prokaryotes.

Published in:

Nucleic Acids Research, 2009, v. 37, n. suppl_1, p. D61, doi. 10.1093/nar/gkn837

By:

Grote, Andreas;
Klein, Johannes;
Retter, Ida;
Haddad, Isam;
Behling, Susanne;
Bunk, Boyke;
Biegler, Ilona;
Yarmolinetz, Svitlana;
Jahn, Dieter;
Münch, Richard

Publication type:

Article