Works matching IS 03051048 AND DT 2009 AND VI 37 AND IP 9

Results: 39

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Published in:: Nucleic Acids Research, 2009, v. 37, n. 9, p. iii, doi. 10.1093/nar/gkp472
Publication type:: Article

Nucleic Acids Research.

Published in:: Nucleic Acids Research, 2009, v. 37, n. 9, p. i, doi. 10.1093/nar/gkp008
Publication type:: Article

Nucleic Acids Research.

Published in:: Nucleic Acids Research, 2009, v. 37, n. 9, p. ii, doi. 10.1093/nar/gkp458
Publication type:: Article

Database resources of the National Center for Biotechnology Information.

Published in:

Nucleic Acids Research, 2009, v. 37, n. 9, p. 3124, doi. 10.1093/nar/gkp382

By:

Sayers, Eric W.;
Barrett, Tanya;
Benson, Dennis A.;
Bryant, Stephen H.;
Canese, Kathi;
Chetvernin, Vyacheslav;
Church, Deanna M.;
DiCuccio, Michael;
Edgar, Ron;
Federhen, Scott;
Feolo, Michael;
Geer, Lewis Y.;
Helmberg, Wolfgang;
Kapustin, Yuri;
Landsman, David;
Lipman, David J.;
Madden, Thomas L.;
Maglott, Donna R.;
Miller, Vadim;
Mizrachi, Ilene

Publication type:

Article

Composite RNA aptamers as functional mimics of proteins.

Published in:

Nucleic Acids Research, 2009, v. 37, n. 9, p. e71

By:

Xu, Daiying;
Shi, Hua

Publication type:

Article

Mining small RNA sequencing data: a new approach to identify small nucleolar RNAs in Arabidopsis.

Published in:

Nucleic Acids Research, 2009, v. 37, n. 9, p. e69, doi. 10.1093/nar/gkp225

By:

Chen, Ho-Ming;
Wu, Shu-Hsing

Publication type:

Article

Comparative analysis of different laser systems to study cellular responses to DNA damage in mammalian cells.

Published in:

Nucleic Acids Research, 2009, v. 37, n. 9, p. e68, doi. 10.1093/nar/gkp221

By:

Kong, Xiangduo;
Mohanty, Samarendra K.;
Stephens, Jared;
Heale, Jason T.;
Gomez-Godinez, Veronica;
Shi, Linda Z.;
Kim, Jong-Soo;
Yokomori, Kyoko;
Berns, Michael W.

Publication type:

Article

Human Splicing Finder: an online bioinformatics tool to predict splicing signals.

Published in:

Nucleic Acids Research, 2009, v. 37, n. 9, p. e67, doi. 10.1093/nar/gkp215

By:

Desmet, François-Olivier;
Hamroun, Dalil;
Lalande, Marine;
Collod-Béroud, Gwenaëlle;
Claustres, Mireille;
Béroud, Christophe

Publication type:

Article

Accurate characterization of weak macromolecular interactions by titration of NMR residual dipolar couplings: application to the CD2AP SH3-C:ubiquitin complex.

Published in:

Nucleic Acids Research, 2009, v. 37, n. 9, p. e70, doi. 10.1093/nar/gkp211

By:

Ortega-Roldan, Jose Luis;
Jensen, Malene Ringkjøbing;
Brutscher, Bernhard;
Azuaga, Ana I.;
Blackledge, Martin;
van Nuland, Nico A. J.

Publication type:

Article

Identification and classification of ncRNA molecules using graph properties.

Published in:

Nucleic Acids Research, 2009, v. 37, n. 9, p. e66, doi. 10.1093/nar/gkp206

By:

Childs, Liam;
Nikoloski, Zoran;
May, Patrick;
Walther, Dirk

Publication type:

Article

Gene structures and processing of Arabidopsis thaliana HYL1-dependent pri-miRNAs.

Published in:

Nucleic Acids Research, 2009, v. 37, n. 9, p. 3083, doi. 10.1093/nar/gkp189

By:

Szarzynska, Bogna;
Sobkowiak, Lukasz;
Pant, Bikram Datt;
Balazadeh, Salma;
Scheible, Wolf-Rüdiger;
Mueller-Roeber, Bernd;
Jarmolowski, Artur;
Szweykowska-Kulinska, Zofia

Publication type:

Article

Selection, characterization and application of new RNA HIV gp 120 aptamers for facile delivery of Dicer substrate siRNAs into HIV infected cells.

Published in:

Nucleic Acids Research, 2009, v. 37, n. 9, p. 3094, doi. 10.1093/nar/gkp185

By:

Zhou, Jiehua;
Swiderski, Piotr;
Li, Haitang;
Zhang, Jane;
Neff, C. Preston;
Akkina, Ramesh;
Rossi, John J.

Publication type:

Article

Creation of a type IIS restriction endonuclease with a long recognition sequence.

Published in:

Nucleic Acids Research, 2009, v. 37, n. 9, p. 3061, doi. 10.1093/nar/gkp182

By:

Lippow, Shaun M.;
Aha, Patti M.;
Parker, Matthew H.;
Blake, William J.;
Baynes, Brian M.;
Lipovšek, Daša

Publication type:

Article

Heat shock factor-1 modulates p53 activity in the transcriptional response to DNA damage.

Published in:

Nucleic Acids Research, 2009, v. 37, n. 9, p. 2962, doi. 10.1093/nar/gkp180

By:

Logan, Ian R.;
McNeill, Hesta V.;
Cook, Susan;
Lu, Xiaohong;
Meek, David W.;
Fuller-Pace, Frances V.;
Lunec, John;
Robson, Craig N.

Publication type:

Article

Dazap2 modulates transcription driven by the Wnt effector TCF-4.

Published in:

Nucleic Acids Research, 2009, v. 37, n. 9, p. 3007, doi. 10.1093/nar/gkp179

By:

Lukas, Jan;
Mazna, Petr;
Valenta, Tomas;
Doubravska, Lenka;
Pospichalova, Vendula;
Vojtechova, Martina;
Fafilek, Bohumil;
Ivanek, Robert;
Plachy, Jiri;
Novak, Jakub;
Korinek, Vladimir

Publication type:

Article

A role for hydrophobicity in a Diels–Alder reaction catalyzed by pyridyl-modified RNA.

Published in:

Nucleic Acids Research, 2009, v. 37, n. 9, p. 3074, doi. 10.1093/nar/gkp177

By:

Gagnon, Keith T.;
Ju, Show-Yi;
Goshe, Michael B.;
Maxwell, E. Stuart;
Franzen, Stefan

Publication type:

Article

The proapoptotic dp5 gene is a direct target of the MLK-JNK-c-Jun pathway in sympathetic neurons.

Published in:

Nucleic Acids Research, 2009, v. 37, n. 9, p. 3044, doi. 10.1093/nar/gkp175

By:

Towers, Emily;
Gilley, Jonathan;
Randall, Rebecca;
Hughes, Rosie;
Kristiansen, Mark;
Ham, Jonathan

Publication type:

Article

Creation of the two isoforms of rodent NKG2D was driven by a B1 retrotransposon insertion.

Published in:

Nucleic Acids Research, 2009, v. 37, n. 9, p. 3032, doi. 10.1093/nar/gkp174

By:

Lai, C. Benjamin;
Zhang, Ying;
Rogers, Sally L.;
Mager, Dixie L.

Publication type:

Article

The RRM domain in GW182 proteins contributes to miRNA-mediated gene silencing.

Published in:

Nucleic Acids Research, 2009, v. 37, n. 9, p. 2974, doi. 10.1093/nar/gkp173

By:

Eulalio, Ana;
Tritschler, Felix;
Büttner, Regina;
Weichenrieder, Oliver;
Izaurralde, Elisa;
Truffault, Vincent

Publication type:

Article

The solution structure of the first PHD finger of autoimmune regulator in complex with non-modified histone H3 tail reveals the antagonistic role of H3R2 methylation.

Published in:

Nucleic Acids Research, 2009, v. 37, n. 9, p. 2951, doi. 10.1093/nar/gkp166

By:

Chignola, Francesca;
Gaetani, Massimiliano;
Rebane, Ana;
Org, Tõnis;
Mollica, Luca;
Zucchelli, Chiara;
Spitaleri, Andrea;
Mannella, Valeria;
Peterson, Pärt;
Musco, Giovanna

Publication type:

Article

Expression profiling of hypothetical genes in Desulfovibrio vulgaris leads to improved functional annotation.

Published in:

Nucleic Acids Research, 2009, v. 37, n. 9, p. 2926, doi. 10.1093/nar/gkp164

By:

Elias, Dwayne A.;
Mukhopadhyay, Aindrila;
Joachimiak, Marcin P.;
Drury, Elliott C.;
Redding, Alyssa M.;
Yen, Huei-Che B.;
Fields, Matthew W.;
Hazen, Terry C.;
Arkin, Adam P.;
Keasling, Jay D.;
Wall, Judy D.

Publication type:

Article

The transcriptional coactivator MAML1 regulates p300 autoacetylation and HAT activity.

Published in:

Nucleic Acids Research, 2009, v. 37, n. 9, p. 2996, doi. 10.1093/nar/gkp163

By:

Hansson, Magnus L.;
Popko-Ścibor, Anita E.;
Saint Just Ribeiro, Mariana;
Dancy, Beverley M.;
Lindberg, Mikael J.;
Cole, Philip A.;
Wallberg, Annika E.

Publication type:

Article

Structural basis of tRNA modification with CO2 fixation and methylation by wybutosine synthesizing enzyme TYW4†.

Published in:

Nucleic Acids Research, 2009, v. 37, n. 9, p. 2910, doi. 10.1093/nar/gkp158

By:

Suzuki, Yoko;
Noma, Akiko;
Suzuki, Tsutomu;
Ishitani, Ryuichiro;
Nureki, Osamu

Publication type:

Article

Proofreading exonuclease activity of human DNA polymerase δ and its effects on lesion-bypass DNA synthesis.

Published in:

Nucleic Acids Research, 2009, v. 37, n. 9, p. 2854, doi. 10.1093/nar/gkp155

By:

Fazlieva, Ruzaliya;
Spittle, Cynthia S.;
Morrissey, Darlene;
Hayashi, Harutoshi;
Yan, Hong;
Matsumoto, Yoshihiro

Publication type:

Article

The universal YrdC/Sua5 family is required for the formation of threonylcarbamoyladenosine in tRNA.

Published in:

Nucleic Acids Research, 2009, v. 37, n. 9, p. 2894, doi. 10.1093/nar/gkp152

By:

El Yacoubi, Basma;
Lyons, Benjamin;
Cruz, Yulien;
Reddy, Robert;
Nordin, Brian;
Agnelli, Fabio;
Williamson, James R.;
Schimmel, Paul;
Swairjo, Manal A.;
de Crécy-Lagard, Valérie

Publication type:

Article

AEBP2 as a potential targeting protein for Polycomb Repression Complex PRC2.

Published in:

Nucleic Acids Research, 2009, v. 37, n. 9, p. 2940, doi. 10.1093/nar/gkp149

By:

Kim, Hana;
Kang, Keunsoo;
Kim, Joomyeong

Publication type:

Article

From damaged genome to cell surface: transcriptome changes during bacterial cell death triggered by loss of a restriction–modification gene complex.

Published in:

Nucleic Acids Research, 2009, v. 37, n. 9, p. 3021, doi. 10.1093/nar/gkp148

By:

Asakura, Yoko;
Kobayashi, Ichizo

Publication type:

Article

Long 3′-UTRs target wild-type mRNAs for nonsense-mediated mRNA decay in Saccharomyces cerevisiae.

Published in:

Nucleic Acids Research, 2009, v. 37, n. 9, p. 2771, doi. 10.1093/nar/gkp146

By:

Kebaara, Bessie W.;
Atkin, Audrey L.

Publication type:

Article

Protein hnRNP A1 and its derivative Up1 unfold quadruplex DNA in the human KRAS promoter: implications for transcription.

Published in:

Nucleic Acids Research, 2009, v. 37, n. 9, p. 2841, doi. 10.1093/nar/gkp138

By:

Paramasivam, Manikandan;
Membrino, Alexandro;
Cogoi, Susanna;
Fukuda, Hirokazu;
Nakagama, Hitoshi;
Xodo, Luigi E.

Publication type:

Article

Bending modes of DNA directly addressed by cryo-electron microscopy of DNA minicircles.

Published in:

Nucleic Acids Research, 2009, v. 37, n. 9, p. 2882, doi. 10.1093/nar/gkp137

By:

Demurtas, Davide;
Amzallag, Arnaud;
Rawdon, Eric J.;
Maddocks, John H.;
Dubochet, Jacques;
Stasiak, Andrzej

Publication type:

Article

CK1δ modulates the transcriptional activity of ERα via AIB1 in an estrogen-dependent manner and regulates ERα–AIB1 interactions.

Published in:

Nucleic Acids Research, 2009, v. 37, n. 9, p. 3110, doi. 10.1093/nar/gkp136

By:

Giamas, Georgios;
Castellano, Leandro;
Feng, Qin;
Knippschild, Uwe;
Jacob, Jimmy;
Thomas, Ross S.;
Coombes, R. Charles;
Smith, Carolyn L.;
Jiao, Long R.;
Stebbing, Justin

Publication type:

Article

Silencing by nuclear matrix attachment distinguishes cell-type specificity: association with increased proliferation capacity.

Published in:

Nucleic Acids Research, 2009, v. 37, n. 9, p. 2779, doi. 10.1093/nar/gkp135

By:

Linnemann, Amelia K.;
Krawetz, Stephen A.

Publication type:

Article

Direct demonstration and quantification of long-range DNA looping by the λ bacteriophage repressor.

Published in:

Nucleic Acids Research, 2009, v. 37, n. 9, p. 2789, doi. 10.1093/nar/gkp134

By:

Zurla, Chiara;
Manzo, Carlo;
Dunlap, David;
Lewis, Dale E. A.;
Adhya, Sankar;
Finzi, Laura

Publication type:

Article

The poly dA helix: a new structural motif for high performance DNA-based molecular switches.

Published in:

Nucleic Acids Research, 2009, v. 37, n. 9, p. 2810, doi. 10.1093/nar/gkp133

By:

Chakraborty, Saikat;
Sharma, Suruchi;
Maiti, Prabal K.;
Krishnan, Yamuna

Publication type:

Article

Contributions of the individual hydrophobic clefts of the Escherichia coli β sliding clamp to clamp loading, DNA replication and clamp recycling.

Published in:

Nucleic Acids Research, 2009, v. 37, n. 9, p. 2796, doi. 10.1093/nar/gkp128

By:

Scouten Ponticelli, Sarah K.;
Duzen, Jill M.;
Sutton, Mark D.

Publication type:

Article

Promoter targeted small RNAs induce long-term transcriptional gene silencing in human cells.

Published in:

Nucleic Acids Research, 2009, v. 37, n. 9, p. 2984, doi. 10.1093/nar/gkp127

By:

Hawkins, Peter G.;
Santoso, Sharon;
Adams, Christopher;
Anest, Vasiliki;
Morris, Kevin V.

Publication type:

Article

Distinctive sequence patterns in metazoan and yeast nucleosomes: Implications for linker histone binding to AT-rich and methylated DNA.

Published in:

Nucleic Acids Research, 2009, v. 37, n. 9, p. 2818, doi. 10.1093/nar/gkp113

By:

Cui, Feng;
Zhurkin, Victor B.

Publication type:

Article

A large-scale chemical modification screen identifies design rules to generate siRNAs with high activity, high stability and low toxicity.

Published in:

Nucleic Acids Research, 2009, v. 37, n. 9, p. 2867, doi. 10.1093/nar/gkp106

By:

Bramsen, Jesper B.;
Laursen, Maria B.;
Nielsen, Anne F.;
Hansen, Thomas B.;
Bus, Claus;
Langkjær, Niels;
Babu, B. Ravindra;
Højland, Torben;
Abramov, Mikhail;
Van Aerschot, Arthur;
Odadzic, Dalibor;
Smicius, Romualdas;
Haas, Jens;
Andree, Cordula;
Barman, Jharna;
Wenska, Malgorzata;
Srivastava, Puneet;
Zhou, Chuanzheng;
Honcharenko, Dmytro;
Hess, Simone

Publication type:

Article

The efficiency and fidelity of 8-oxo-guanine bypass by DNA polymerases δ and η.

Published in:

Nucleic Acids Research, 2009, v. 37, n. 9, p. 2830, doi. 10.1093/nar/gkp103

By:

McCulloch, Scott D.;
Kokoska, Robert J.;
Garg, Parie;
Burgers, Peter M.;
Kunkel, Thomas A.

Publication type:

Article