Works matching IS 03051048 AND DT 2009 AND VI 37 AND IP 21

Results: 39

Fine-grained annotation and classification of de novo predicted LTR retrotransposons.

Published in:

Nucleic Acids Research, 2009, v. 37, n. 21, p. 7002, doi. 10.1093/nar/gkp759

By:

Steinbiss, Sascha;
Willhoeft, Ute;
Gremme, Gordon;
Kurtz, Stefan

Publication type:

Article

Nuclear export factor RBM15 facilitates the access of DBP5 to mRNA.

Published in:

Nucleic Acids Research, 2009, v. 37, n. 21, p. 7151, doi. 10.1093/nar/gkp782

By:

Zolotukhin, Andrei S.;
Uranishi, Hiroaki;
Lindtner, Susan;
Bear, Jenifer;
Pavlakis, George N.;
Felber, Barbara K.

Publication type:

Article

Crystal structure of the EndoG/EndoGI complex: mechanism of EndoG inhibition.

Published in:

Nucleic Acids Research, 2009, v. 37, n. 21, p. 7312, doi. 10.1093/nar/gkp770

By:

Loll, Bernhard;
Gebhardt, Maike;
Wahle, Elmar;
Meinhart, Anton

Publication type:

Article

Primary sequence and epigenetic determinants of in vivo occupancy of genomic DNA by GATA1.

Published in:

Nucleic Acids Research, 2009, v. 37, n. 21, p. 7024, doi. 10.1093/nar/gkp747

By:

Zhang, Ying;
Wu, Weisheng;
Cheng, Yong;
King, David C.;
Harris, Robert S.;
Taylor, James;
Chiaromonte, Francesca;
Hardison, Ross C.

Publication type:

Article

The transcriptional co-activator PCAF regulates cdk2 activity.

Published in:

Nucleic Acids Research, 2009, v. 37, n. 21, p. 7072, doi. 10.1093/nar/gkp777

By:

Mateo, Francesca;
Vidal-Laliena, Miriam;
Canela, Núria;
Zecchin, Annalisa;
Martínez-Balbás, Marian;
Agell, Neus;
Giacca, Mauro;
Pujol, María Jesús;
Bachs, Oriol

Publication type:

Article

An analytical platform for mass spectrometry-based identification and chemical analysis of RNA in ribonucleoprotein complexes.

Published in:

Nucleic Acids Research, 2009, v. 37, n. 21, p. e140, doi. 10.1093/nar/gkp732

By:

Taoka, Masato;
Yamauchi, Yoshio;
Nobe, Yuko;
Masaki, Shunpei;
Nakayama, Hiroshi;
Ishikawa, Hideaki;
Takahashi, Nobuhiro;
Isobe, Toshiaki

Publication type:

Article

Bioinformatics and functional analysis define four distinct groups of AlkB DNA-dioxygenases in bacteria.

Published in:

Nucleic Acids Research, 2009, v. 37, n. 21, p. 7124, doi. 10.1093/nar/gkp774

By:

van den Born, Erwin;
Bekkelund, Anders;
Moen, Marivi N.;
Omelchenko, Marina V.;
Klungland, Arne;
Falnes, Pål Ø.

Publication type:

Article

Impact of DNA-binding position variants on yeast gene expression.

Published in:

Nucleic Acids Research, 2009, v. 37, n. 21, p. 6991, doi. 10.1093/nar/gkp743

By:

Swamy, Krishna B. S.;
Cho, Chung-Yi;
Chiang, Sufeng;
Tsai, Zing Tsung-Yeh;
Tsai, Huai-Kuang

Publication type:

Article

A universal description for the experimental behavior of salt-(in)dependent oligocation-induced DNA condensation.

Published in:

Nucleic Acids Research, 2009, v. 37, n. 21, p. 7137, doi. 10.1093/nar/gkp683

By:

Korolev, Nikolay;
Berezhnoy, Nikolay V.;
Eom, Khee Dong;
Tam, James P.;
Nordenskiöld, Lars

Publication type:

Article

Evolutionarily conserved proteins MnmE and GidA catalyze the formation of two methyluridine derivatives at tRNA wobble positions.

Published in:

Nucleic Acids Research, 2009, v. 37, n. 21, p. 7177, doi. 10.1093/nar/gkp762

By:

Moukadiri, Ismaïl;
Prado, Silvia;
Piera, Julio;
Velázquez-Campoy, Adrián;
Björk, Glenn R.;
Armengod, M.-Eugenia

Publication type:

Article

A trimeric DNA polymerase complex increases the native replication processivity.

Published in:

Nucleic Acids Research, 2009, v. 37, n. 21, p. 7194, doi. 10.1093/nar/gkp767

By:

Mikheikin, Andrey L.;
Lin, Hsiang-Kai;
Mehta, Preeti;
Jen-Jacobson, Linda;
Trakselis, Michael A.

Publication type:

Article

An Alu-derived intronic splicing enhancer facilitates intronic processing and modulates aberrant splicing in ATM.

Published in:

Nucleic Acids Research, 2009, v. 37, n. 21, p. 7258, doi. 10.1093/nar/gkp778

By:

Pastor, Tibor;
Talotti, Gabriele;
Lewandowska, Marzena Anna;
Pagani, Franco

Publication type:

Article

A search for small noncoding RNAs in Staphylococcus aureus reveals a conserved sequence motif for regulation.

Published in:

Nucleic Acids Research, 2009, v. 37, n. 21, p. 7239, doi. 10.1093/nar/gkp668

By:

Geissmann, Thomas;
Chevalier, Clément;
Cros, Marie-Josée;
Boisset, Sandrine;
Fechter, Pierre;
Noirot, Céline;
Schrenzel, Jacques;
François, Patrice;
Vandenesch, François;
Gaspin, Christine;
Romby, Pascale

Publication type:

Article

Subscriptions.

Published in:: Nucleic Acids Research, 2009, v. 37, n. 21, p. iii, doi. 10.1093/nar/gkp1186
Publication type:: Article

Two Dot1 isoforms in Saccharomyces cerevisiae as a result of leaky scanning by the ribosome.

Published in:

Nucleic Acids Research, 2009, v. 37, n. 21, p. 7047, doi. 10.1093/nar/gkp765

By:

Frederiks, Floor;
Heynen, Guus J. J. E.;
van Deventer, Sjoerd J.;
Janssen, Hans;
van Leeuwen, Fred

Publication type:

Article

External oligonucleotide standards enable cross laboratory comparison and exchange of real-time quantitative PCR data.

Published in:

Nucleic Acids Research, 2009, v. 37, n. 21, p. e138, doi. 10.1093/nar/gkp721

By:

Vermeulen, Joëlle;
Pattyn, Filip;
De Preter, Katleen;
Vercruysse, Liesbeth;
Derveaux, Stefaan;
Mestdagh, Pieter;
Lefever, Steve;
Hellemans, Jan;
Speleman, Frank;
Vandesompele, Jo

Publication type:

Article

The single polypeptide restriction–modification enzyme LlaGI is a self-contained molecular motor that translocates DNA loops.

Published in:

Nucleic Acids Research, 2009, v. 37, n. 21, p. 7219, doi. 10.1093/nar/gkp794

By:

Smith, Rachel M.;
Josephsen, Jytte;
Szczelkun, Mark D.

Publication type:

Article

RNA–protein binding kinetics in an automated microfluidic reactor.

Published in:

Nucleic Acids Research, 2009, v. 37, n. 21, p. e142, doi. 10.1093/nar/gkp733

By:

Ridgeway, William K.;
Seitaridou, Effrosyni;
Phillips, Rob;
Williamson, James R.

Publication type:

Article

tRNA over-expression in breast cancer and functional consequences.

Published in:

Nucleic Acids Research, 2009, v. 37, n. 21, p. 7268, doi. 10.1093/nar/gkp787

By:

Pavon-Eternod, Mariana;
Gomes, Suzanna;
Geslain, Renaud;
Dai, Qing;
Rosner, Marsha Rich;
Pan, Tao

Publication type:

Article

RIP140 in thyroid hormone-repression and chromatin remodeling of Crabp1 gene during adipocyte differentiation.

Published in:

Nucleic Acids Research, 2009, v. 37, n. 21, p. 7085, doi. 10.1093/nar/gkp780

By:

Park, Sung Wook;
Huang, Wei-Hong;
Persaud, Shawna D.;
Wei, Li-Na

Publication type:

Article

Nucleic Acids Research.

Published in:: Nucleic Acids Research, 2009, v. 37, n. 21, p. i, doi. 10.1093/nar/gkp008
Publication type:: Article

PiggyBac transgenic strategies in the developing chicken spinal cord.

Published in:

Nucleic Acids Research, 2009, v. 37, n. 21, p. e141, doi. 10.1093/nar/gkp686

By:

Lu, Yanyan;
Lin, Chengyi;
Wang, Xiaozhong

Publication type:

Article

Ion-induced folding of a kink turn that departs from the conventional sequence.

Published in:

Nucleic Acids Research, 2009, v. 37, n. 21, p. 7281, doi. 10.1093/nar/gkp791

By:

Schroeder, Kersten T.;
Lilley, David M. J.

Publication type:

Article

Influence of local sequence context on damaged base conformation in human DNA polymerase ι: molecular dynamics studies of nucleotide incorporation opposite a benzo[a]pyrene-derived adenine lesion.

Published in:

Nucleic Acids Research, 2009, v. 37, n. 21, p. 7095, doi. 10.1093/nar/gkp745

By:

Donny-Clark, Kerry;
Broyde, Suse

Publication type:

Article

A SRS2 homolog from Arabidopsis thaliana disrupts recombinogenic DNA intermediates and facilitates single strand annealing.

Published in:

Nucleic Acids Research, 2009, v. 37, n. 21, p. 7163, doi. 10.1093/nar/gkp753

By:

Blanck, Sandra;
Kobbe, Daniela;
Hartung, Frank;
Fengler, Karin;
Focke, Manfred;
Puchta, Holger

Publication type:

Article

An Mrr-family nuclease motif in the single polypeptide restriction–modification enzyme LlaGI.

Published in:

Nucleic Acids Research, 2009, v. 37, n. 21, p. 7231, doi. 10.1093/nar/gkp795

By:

Smith, Rachel M.;
Josephsen, Jytte;
Szczelkun, Mark D.

Publication type:

Article

A directed evolution design of a GCG-specific DNA hemimethylase.

Published in:

Nucleic Acids Research, 2009, v. 37, n. 21, p. 7332

By:

Gerasimaitė, Rūta;
Vilkaitis, Giedrius;
Klimašauskas, Saulius

Publication type:

Article

Nucleic Acids Research.

Published in:: Nucleic Acids Research, 2009, v. 37, n. 21, p. ii, doi. 10.1093/nar/gkp1184
Publication type:: Article

Demonstration of all-or-none loss of imprinting in mRNA expression in single cells.

Published in:

Nucleic Acids Research, 2009, v. 37, n. 21, p. 7039, doi. 10.1093/nar/gkp749

By:

Diplas, Andreas I.;
Hu, Jianzhong;
Lee, Men-Jean;
Ma, Yula Y.;
Lee, Yin L.;
Lambertini, Luca;
Chen, Jia;
Wetmur, James G.

Publication type:

Article

Revisiting the planarity of nucleic acid bases: Pyramidilization at glycosidic nitrogen in purine bases is modulated by orientation of glycosidic torsion.

Published in:

Nucleic Acids Research, 2009, v. 37, n. 21, p. 7321, doi. 10.1093/nar/gkp783

By:

Sychrovsky, Vladimir;
Foldynova-Trantirkova, Silvie;
Spackova, Nada;
Robeyns, Koen;
Van Meervelt, Luc;
Blankenfeldt, Wulf;
Vokacova, Zuzana;
Sponer, Jiri;
Trantirek, Lukas

Publication type:

Article

The HSV-1 ICP27 RGG box specifically binds flexible, GC-rich sequences but not G-quartet structures.

Published in:

Nucleic Acids Research, 2009, v. 37, n. 21, p. 7290, doi. 10.1093/nar/gkp793

By:

Corbin-Lickfett, Kara A.;
Chen, I-Hsiung Brandon;
Cocco, Melanie J.;
Sandri-Goldin, Rozanne M.

Publication type:

Article

Phage T4 mobE promotes trans homing of the defunct homing endonuclease I-TevIII.

Published in:

Nucleic Acids Research, 2009, v. 37, n. 21, p. 7110, doi. 10.1093/nar/gkp769

By:

Wilson, Gavin W.;
Edgell, David R.

Publication type:

Article

DNA cleavage and methylation specificity of the single polypeptide restriction–modification enzyme LlaGI.

Published in:

Nucleic Acids Research, 2009, v. 37, n. 21, p. 7206, doi. 10.1093/nar/gkp790

By:

Smith, Rachel M.;
Diffin, Fiona M.;
Savery, Nigel J.;
Josephsen, Jytte;
Szczelkun, Mark D.

Publication type:

Article

FSscan: a mechanism-based program to identify +1 ribosomal frameshift hotspots.

Published in:

Nucleic Acids Research, 2009, v. 37, n. 21, p. 7302, doi. 10.1093/nar/gkp796

By:

Liao, Pei-Yu;
Choi, Yong Seok;
Lee, Kelvin H.

Publication type:

Article

Universal function-specificity of codon usage.

Published in:

Nucleic Acids Research, 2009, v. 37, n. 21, p. 7014, doi. 10.1093/nar/gkp792

By:

Najafabadi, Hamed Shateri;
Goodarzi, Hani;
Salavati, Reza

Publication type:

Article

HMMConverter 1.0: a toolbox for hidden Markov models.

Published in:

Nucleic Acids Research, 2009, v. 37, n. 21, p. e139, doi. 10.1093/nar/gkp662

By:

Lam, Tin Yin;
Meyer, Irmtraud M.

Publication type:

Article

SMYD1, the myogenic activator, is a direct target of serum response factor and myogenin.

Published in:

Nucleic Acids Research, 2009, v. 37, n. 21, p. 7059

By:

Li, Dali;
Niu, Zhiyv;
Yu, Weishi;
Qian, Yu;
Wang, Qian;
Li, Qiang;
Yi, Zhengfang;
Luo, Jian;
Wu, Xiushan;
Wang, Yuequn;
Schwartz, Robert J.;
Liu, Mingyao

Publication type:

Article

MGEScan-non-LTR: computational identification and classification of autonomous non-LTR retrotransposons in eukaryotic genomes.

Published in:

Nucleic Acids Research, 2009, v. 37, n. 21, p. e143, doi. 10.1093/nar/gkp752

By:

Rho, Mina;
Tang, Haixu

Publication type:

Article

Phylogenetic screening of a bacterial, metagenomic library using homing endonuclease restriction and marker insertion.

Published in:

Nucleic Acids Research, 2009, v. 37, n. 21, p. e144, doi. 10.1093/nar/gkp746

By:

Yung, Pui Yi;
Burke, Catherine;
Lewis, Matt;
Egan, Suhelen;
Kjelleberg, Staffan;
Thomas, Torsten

Publication type:

Article