Works matching IS 03051048 AND DT 2009 AND VI 37 AND IP 11

Results: 41

Nucleic Acids Research.

Published in:: Nucleic Acids Research, 2009, v. 37, n. 11, p. i, doi. 10.1093/nar/gkp008
Publication type:: Article

Subscriptions.

Published in:: Nucleic Acids Research, 2009, v. 37, n. 11, p. iii, doi. 10.1093/nar/gkp565
Publication type:: Article

Nucleic Acids Research.

Published in:: Nucleic Acids Research, 2009, v. 37, n. 11, p. ii, doi. 10.1093/nar/gkp564
Publication type:: Article

Sim4cc: a cross-species spliced alignment program.

Published in:

Nucleic Acids Research, 2009, v. 37, n. 11, p. e80, doi. 10.1093/nar/gkp319

By:

Zhou, Leming;
Pertea, Mihaela;
Delcher, Arthur L.;
Florea, Liliana

Publication type:

Article

MM-align: a quick algorithm for aligning multiple-chain protein complex structures using iterative dynamic programming.

Published in:

Nucleic Acids Research, 2009, v. 37, n. 11, p. e83, doi. 10.1093/nar/gkp318

By:

Mukherjee, Srayanta;
Zhang, Yang

Publication type:

Article

Tissue-specific regulatory network extractor (TS-REX): a database and software resource for the tissue and cell type-specific investigation of transcription factor-gene networks.

Published in:

Nucleic Acids Research, 2009, v. 37, n. 11, p. e82, doi. 10.1093/nar/gkp311

By:

Colecchia, Federico;
Kottwitz, Denise;
Wagner, Mandy;
Pfenninger, Cosima V.;
Thiel, Gerald;
Tamm, Ingo;
Peterson, Carsten;
Nuber, Ulrike A.

Publication type:

Article

Text-based over-representation analysis of microarray gene lists with annotation bias.

Published in:

Nucleic Acids Research, 2009, v. 37, n. 11, p. e79, doi. 10.1093/nar/gkp310

By:

Leong, Hui Sun;
Kipling, David

Publication type:

Article

TARGeT: a web-based pipeline for retrieving and characterizing gene and transposable element families from genomic sequences.

Published in:

Nucleic Acids Research, 2009, v. 37, n. 11, p. e78, doi. 10.1093/nar/gkp295

By:

Han, Yujun;
Burnette, James M.;
Wessler, Susan R.

Publication type:

Article

Robust methods for purification of histones from cultured mammalian cells with the preservation of their native modifications.

Published in:

Nucleic Acids Research, 2009, v. 37, n. 11, p. e81, doi. 10.1093/nar/gkp273

By:

Rodriguez-Collazo, Pedro;
Leuba, Sanford H.;
Zlatanova, Jordanka

Publication type:

Article

MicroRNA-338-3p and microRNA-451 contribute to the formation of basolateral polarity in epithelial cells.

Published in:

Nucleic Acids Research, 2009, v. 37, n. 11, p. 3821, doi. 10.1093/nar/gkp255

By:

Tsuchiya, Soken;
Oku, Masahito;
Imanaka, Yukako;
Kunimoto, Ryo;
Okuno, Yasushi;
Terasawa, Kazuya;
Sato, Fumiaki;
Tsujimoto, Gozoh;
Shimizu, Kazuharu

Publication type:

Article

Replication fork reversal and the maintenance of genome stability.

Published in:

Nucleic Acids Research, 2009, v. 37, n. 11, p. 3475, doi. 10.1093/nar/gkp244

By:

Atkinson, John;
McGlynn, Peter

Publication type:

Article

Silencing of a plant gene by transcriptional interference.

Published in:

Nucleic Acids Research, 2009, v. 37, n. 11, p. 3739, doi. 10.1093/nar/gkp241

By:

Hedtke, Boris;
Grimm, Bernhard

Publication type:

Article

Low modularity of aminoacyl-tRNA substrates in polymerization by the ribosome.

Published in:

Nucleic Acids Research, 2009, v. 37, n. 11, p. 3747, doi. 10.1093/nar/gkp240

By:

Forster, Anthony C.

Publication type:

Article

Molecular genetics and comparative genomics reveal RNAi is not functional in malaria parasites.

Published in:

Nucleic Acids Research, 2009, v. 37, n. 11, p. 3788, doi. 10.1093/nar/gkp239

By:

Baum, Jake;
Papenfuss, Anthony T.;
Mair, Gunnar R.;
Janse, Chris J.;
Vlachou, Dina;
Waters, Andrew P.;
Cowman, Alan F.;
Crabb, Brendan S.;
de Koning-Ward, Tania F.

Publication type:

Article

Low-fidelity DNA synthesis by the L979F mutator derivative of Saccharomyces cerevisiae DNA polymerase ζ.

Published in:

Nucleic Acids Research, 2009, v. 37, n. 11, p. 3774, doi. 10.1093/nar/gkp238

By:

Stone, Jana E.;
Kissling, Grace E.;
Lujan, Scott A.;
Rogozin, Igor B.;
Stith, Carrie M.;
Burgers, Peter M. J.;
Kunkel, Thomas A.

Publication type:

Article

Transcriptionally active TFIIH of the early-diverged eukaryote Trypanosoma brucei harbors two novel core subunits but not a cyclin-activating kinase complex.

Published in:

Nucleic Acids Research, 2009, v. 37, n. 11, p. 3811, doi. 10.1093/nar/gkp236

By:

Lee, Ju Huck;
Jung, Hyun Suk;
Günzl, Arthur

Publication type:

Article

Rapid Cdc13 turnover and telomere length homeostasis are controlled by Cdk1-mediated phosphorylation of Cdc13.

Published in:

Nucleic Acids Research, 2009, v. 37, n. 11, p. 3602, doi. 10.1093/nar/gkp235

By:

Tseng, Shun-Fu;
Shen, Zih-Jie;
Tsai, Hung-Ji;
Lin, Yi-Hsuan;
Teng, Shu-Chun

Publication type:

Article

Local and global effects of strong DNA bending induced during molecular dynamics simulations.

Published in:

Nucleic Acids Research, 2009, v. 37, n. 11, p. 3766, doi. 10.1093/nar/gkp234

By:

Curuksu, Jeremy;
Zacharias, Martin;
Lavery, Richard;
Zakrzewska, Krystyna

Publication type:

Article

Histone deacetylase Rpd3 antagonizes Sir2-dependent silent chromatin propagation.

Published in:

Nucleic Acids Research, 2009, v. 37, n. 11, p. 3699, doi. 10.1093/nar/gkp233

By:

Zhou, Jing;
Zhou, Bo O.;
Lenzmeier, Brian A.;
Zhou, Jin-Qiu

Publication type:

Article

The C. elegans Snail homolog CES-1 can activate gene expression in vivo and share targets with bHLH transcription factors.

Published in:

Nucleic Acids Research, 2009, v. 37, n. 11, p. 3689, doi. 10.1093/nar/gkp232

By:

Reece-Hoyes, John S.;
Deplancke, Bart;
Barrasa, M. Inmaculada;
Hatzold, Julia;
Smit, Ryan B.;
Arda, H. Efsun;
Pope, Patricia A.;
Gaudet, Jeb;
Conradt, Barbara;
Walhout, Albertha J. M.

Publication type:

Article

Transcriptional regulation shapes the organization of genes on bacterial chromosomes.

Published in:

Nucleic Acids Research, 2009, v. 37, n. 11, p. 3680, doi. 10.1093/nar/gkp231

By:

Janga, Sarath Chandra;
Salgado, Heladia;
Martínez-Antonio, Agustino

Publication type:

Article

Kinetics and thermodynamics of DNA hybridization on gold nanoparticles.

Published in:

Nucleic Acids Research, 2009, v. 37, n. 11, p. 3756, doi. 10.1093/nar/gkp230

By:

Chen, Chunlai;
Wang, Wenjuan;
Ge, Jing;
Zhao, Xin Sheng

Publication type:

Article

Molecular mechanism of poly(ADP-ribosyl)ation by PARP1 and identification of lysine residues as ADP-ribose acceptor sites.

Published in:

Nucleic Acids Research, 2009, v. 37, n. 11, p. 3723, doi. 10.1093/nar/gkp229

By:

Altmeyer, Matthias;
Messner, Simon;
Hassa, Paul O.;
Fey, Monika;
Hottiger, Michael O.

Publication type:

Article

Crystal structure of the ββα-Me type II restriction endonuclease Hpy99I with target DNA.

Published in:

Nucleic Acids Research, 2009, v. 37, n. 11, p. 3799, doi. 10.1093/nar/gkp228

By:

Sokolowska, Monika;
Czapinska, Honorata;
Bochtler, Matthias

Publication type:

Article

Nucleotide analogs and molecular modeling studies reveal key interactions involved in substrate recognition by the yeast RNA triphosphatase.

Published in:

Nucleic Acids Research, 2009, v. 37, n. 11, p. 3714, doi. 10.1093/nar/gkp227

By:

Issur, Moheshwarnath;
Despins, Simon;
Bougie, Isabelle;
Bisaillon, Martin

Publication type:

Article

Mutational analysis of the HIV-1 auxiliary protein Vif identifies independent domains important for the physical and functional interaction with HIV-1 reverse transcriptase.

Published in:

Nucleic Acids Research, 2009, v. 37, n. 11, p. 3660, doi. 10.1093/nar/gkp226

By:

Kataropoulou, Alexandra;
Bovolenta, Chiara;
Belfiore, Amalia;
Trabatti, Sonia;
Garbelli, Anna;
Porcellini, Simona;
Lupo, Rossella;
Maga, Giovanni

Publication type:

Article

Coupled termination/reinitiation for translation of the downstream open reading frame B of the prototypic hypovirus CHV1-EP713.

Published in:

Nucleic Acids Research, 2009, v. 37, n. 11, p. 3645, doi. 10.1093/nar/gkp224

By:

Guo, Li-hua;
Sun, Liying;
Chiba, Sotaro;
Araki, Hiroyuki;
Suzuki, Nobuhiro

Publication type:

Article

Alternative polyadenylation variants of the RNA binding protein, HuR: abundance, role of AU-rich elements and auto-Regulation.

Published in:

Nucleic Acids Research, 2009, v. 37, n. 11, p. 3612, doi. 10.1093/nar/gkp223

By:

Al-Ahmadi, Wijdan;
Al-Ghamdi, Maha;
Al-Haj, Latifa;
Al-Saif, Maher;
Khabar, Khalid S. A.

Publication type:

Article

A genotype-to-phenotype map of in vitro selected RNA-cleaving DNAzymes: implications for accessing the target phenotype.

Published in:

Nucleic Acids Research, 2009, v. 37, n. 11, p. 3545, doi. 10.1093/nar/gkp222

By:

Schlosser, Kenny;
Lam, Jeffrey C. F.;
Li, Yingfu

Publication type:

Article

Accurate prediction of NAGNAG alternative splicing.

Published in:

Nucleic Acids Research, 2009, v. 37, n. 11, p. 3569, doi. 10.1093/nar/gkp220

By:

Sinha, Rileen;
Nikolajewa, Swetlana;
Szafranski, Karol;
Hiller, Michael;
Jahn, Niels;
Huse, Klaus;
Platzer, Matthias;
Backofen, Rolf

Publication type:

Article

Non-specific interactions are sufficient to explain the position of heterochromatic chromocenters and nucleoli in interphase nuclei.

Published in:

Nucleic Acids Research, 2009, v. 37, n. 11, p. 3558, doi. 10.1093/nar/gkp219

By:

de Nooijer, S.;
Wellink, J.;
Mulder, B.;
Bisseling, T.

Publication type:

Article

Poly(ADP-ribosyl)ation of heterogeneous nuclear ribonucleoproteins modulates splicing.

Published in:

Nucleic Acids Research, 2009, v. 37, n. 11, p. 3501, doi. 10.1093/nar/gkp218

By:

Ji, Yingbiao;
Tulin, Alexei V.

Publication type:

Article

Targeted correction of a thalassemia-associated β-globin mutation induced by pseudo-complementary peptide nucleic acids.

Published in:

Nucleic Acids Research, 2009, v. 37, n. 11, p. 3635, doi. 10.1093/nar/gkp217

By:

Lonkar, Pallavi;
Kim, Ki-Hyun;
Kuan, Jean Y.;
Chin, Joanna Y.;
Rogers, Faye A.;
Knauert, Melissa P.;
Kole, Ryszard;
Nielsen, Peter E.;
Glazer, Peter M.

Publication type:

Article

Dramatic effect of single-base mutation on the conformational dynamics of human telomeric G-quadruplex.

Published in:

Nucleic Acids Research, 2009, v. 37, n. 11, p. 3625, doi. 10.1093/nar/gkp216

By:

Lee, Ja Yil;
Kim, D. S.

Publication type:

Article

Cleavage of a model DNA replication fork by a Type I restriction endonuclease.

Published in:

Nucleic Acids Research, 2009, v. 37, n. 11, p. 3531, doi. 10.1093/nar/gkp214

By:

Ishikawa, Ken;
Handa, Naofumi;
Kobayashi, Ichizo

Publication type:

Article

Protein-coding gene promoters in Methanocaldococcus (Methanococcus) jannaschii.

Published in:

Nucleic Acids Research, 2009, v. 37, n. 11, p. 3588, doi. 10.1093/nar/gkp213

By:

Zhang, Jian;
Li, Enhu;
Olsen, Gary J.

Publication type:

Article

PROCAIN: protein profile comparison with assisting information.

Published in:

Nucleic Acids Research, 2009, v. 37, n. 11, p. 3522, doi. 10.1093/nar/gkp212

By:

Wang, Yong;
Sadreyev, Ruslan I.;
Grishin, Nick V.

Publication type:

Article

The amino terminal domain from Mrt4 protein can functionally replace the RNA binding domain of the ribosomal P0 protein.

Published in:

Nucleic Acids Research, 2009, v. 37, n. 11, p. 3514

By:

Rodríguez-Mateos, María;
Abia, David;
García-Gómez, Juan J.;
Morreale, Antonio;
de la Cruz, Jesús;
Santos, Cruz;
Remacha, Miguel;
Ballesta, Juan P. G.

Publication type:

Article

mwr Xer site-specific recombination is hypersensitive to DNA supercoiling.

Published in:

Nucleic Acids Research, 2009, v. 37, n. 11, p. 3580, doi. 10.1093/nar/gkp208

By:

Trigueros, Sonia;
Tran, Tung;
Sorto, Nohemy;
Newmark, Jason;
Colloms, Sean D.;
Sherratt, David J.;
Tolmasky, Marcelo E.

Publication type:

Article

Nontarget DNA binding shapes the dynamic landscape for enzymatic recognition of DNA damage.

Published in:

Nucleic Acids Research, 2009, v. 37, n. 11, p. 3493, doi. 10.1093/nar/gkp161

By:

Friedman, Joshua I.;
Majumdar, Ananya;
Stivers, James T.

Publication type:

Article

Constructing RNA dynamical ensembles by combining MD and motionally decoupled NMR RDCs: new insights into RNA dynamics and adaptive ligand recognition.

Published in:

Nucleic Acids Research, 2009, v. 37, n. 11, p. 3670, doi. 10.1093/nar/gkp156

By:

Frank, Aaron T.;
Stelzer, Andrew C.;
Al-Hashimi, Hashim M.;
Andricioaei, Ioan

Publication type:

Article