Works matching IS 03051048 AND DT 2008 AND VI 36 AND IP suppl_2

Results: 96

Keeping pace with the data: 2008 update on the Bioinformatics Links Directory.

Published in:

Nucleic Acids Research, 2008, v. 36, n. suppl_2, p. W2, doi. 10.1093/nar/gkn399

By:

Brazas, Michelle D.;
Fox, Joanne A.;
Brown, Timothy;
McMillan, Scott;
Ouellette, B. F. Francis

Publication type:

Article

Editorial.

Published in:

Nucleic Acids Research, 2008, v. 36, n. suppl_2, p. W1, doi. 10.1093/nar/gkn381

By:

Benson, Gary

Publication type:

Article

LocalMove: computing on-lattice fits for biopolymers.

Published in:

Nucleic Acids Research, 2008, v. 36, n. suppl_2, p. W216, doi. 10.1093/nar/gkn367

By:

Ponty, Y.;
Istrate, R.;
Porcelli, E.;
Clote, P.

Publication type:

Article

KFC Server: interactive forecasting of protein interaction hot spots.

Published in:

Nucleic Acids Research, 2008, v. 36, n. suppl_2, p. W265, doi. 10.1093/nar/gkn346

By:

Darnell, Steven J.;
LeGault, Laura;
Mitchell, Julie C.

Publication type:

Article

Standard and generalized McDonald–Kreitman test: a website to detect selection by comparing different classes of DNA sites.

Published in:

Nucleic Acids Research, 2008, v. 36, n. suppl_2, p. W157, doi. 10.1093/nar/gkn337

By:

Egea, Raquel;
Casillas, Sònia;
Barbadilla, Antonio

Publication type:

Article

NeAT: a toolbox for the analysis of biological networks, clusters, classes and pathways.

Published in:

Nucleic Acids Research, 2008, v. 36, n. suppl_2, p. W444, doi. 10.1093/nar/gkn336

By:

Brohée, Sylvain;
Faust, Karoline;
Lima-Mendez, Gipsi;
Sand, Olivier;
Janky, Rekin's;
Vanderstocken, Gilles;
Deville, Yves;
van Helden, Jacques

Publication type:

Article

bioNMF: a web-based tool for nonnegative matrix factorization in biology.

Published in:

Nucleic Acids Research, 2008, v. 36, n. suppl_2, p. W523, doi. 10.1093/nar/gkn335

By:

Mejía-Roa, E.;
Carmona-Saez, P.;
Nogales, R.;
Vicente, C.;
Vázquez, M.;
Yang, X. Y.;
García, C.;
Tirado, F.;
Pascual-Montano, A.

Publication type:

Article

GeConT 2: gene context analysis for orthologous proteins, conserved domains and metabolic pathways.

Published in:

Nucleic Acids Research, 2008, v. 36, n. suppl_2, p. W176, doi. 10.1093/nar/gkn330

By:

Martinez-Guerrero, C. E.;
Ciria, R.;
Abreu-Goodger, C.;
Moreno-Hagelsieb, G.;
Merino, E.

Publication type:

Article

SARSA: a web tool for structural alignment of RNA using a structural alphabet.

Published in:

Nucleic Acids Research, 2008, v. 36, n. suppl_2, p. W19, doi. 10.1093/nar/gkn327

By:

Chang, Yen-Fu;
Huang, Yen-Lin;
Lu, Chin Lung

Publication type:

Article

Domain Hierarchy and closed Loops (DHcL): a server for exploring hierarchy of protein domain structure.

Published in:

Nucleic Acids Research, 2008, v. 36, n. suppl_2, p. W239, doi. 10.1093/nar/gkn326

By:

Koczyk, Grzegorz;
Berezovsky, Igor N.

Publication type:

Article

Endeavour update: a web resource for gene prioritization in multiple species.

Published in:

Nucleic Acids Research, 2008, v. 36, n. suppl_2, p. W377, doi. 10.1093/nar/gkn325

By:

Tranchevent, Léon-Charles;
Barriot, Roland;
Yu, Shi;
Van Vooren, Steven;
Van Loo, Peter;
Coessens, Bert;
De Moor, Bart;
Aerts, Stein;
Moreau, Yves

Publication type:

Article

E1DS: catalytic site prediction based on 1D signatures of concurrent conservation.

Published in:

Nucleic Acids Research, 2008, v. 36, n. suppl_2, p. W291, doi. 10.1093/nar/gkn324

By:

Chien, Ting-Ying;
Chang, Darby Tien-Hao;
Chen, Chien-Yu;
Weng, Yi-Zhong;
Hsu, Chen-Ming

Publication type:

Article

Onto-CC: a web server for identifying Gene Ontology conceptual clusters.

Published in:

Nucleic Acids Research, 2008, v. 36, n. suppl_2, p. W352, doi. 10.1093/nar/gkn323

By:

Romero-Zaliz, R.;
del Val, C.;
Cobb, J. P.;
Zwir, I.

Publication type:

Article

PROMALS3D web server for accurate multiple protein sequence and structure alignments.

Published in:

Nucleic Acids Research, 2008, v. 36, n. suppl_2, p. W30, doi. 10.1093/nar/gkn322

By:

Pei, Jimin;
Tang, Ming;
Grishin, Nick V.

Publication type:

Article

MAGNOLIA: multiple alignment of protein–coding and structural RNA sequences.

Published in:

Nucleic Acids Research, 2008, v. 36, n. suppl_2, p. W14, doi. 10.1093/nar/gkn321

By:

Fontaine, Arnaud;
de Monte, Antoine;
Touzet, Hélène

Publication type:

Article

SCANPS: a web server for iterative protein sequence database searching by dynamic programing, with display in a hierarchical SCOP browser.

Published in:

Nucleic Acids Research, 2008, v. 36, n. suppl_2, p. W25, doi. 10.1093/nar/gkn320

By:

Walsh, Thomas P.;
Webber, Caleb;
Searle, Stephen;
Sturrock, Shane S.;
Barton, Geoffrey J.

Publication type:

Article

BIOSMILE web search: a web application for annotating biomedical entities and relations.

Published in:

Nucleic Acids Research, 2008, v. 36, n. suppl_2, p. W390, doi. 10.1093/nar/gkn319

By:

Dai, Hong-Jie;
Huang, Chi-Hsin;
Lin, Ryan T. K.;
Tsai, Richard Tzong-Han;
Hsu, Wen-Lian

Publication type:

Article

Babelomics: advanced functional profiling of transcriptomics, proteomics and genomics experiments.

Published in:

Nucleic Acids Research, 2008, v. 36, n. suppl_2, p. W341, doi. 10.1093/nar/gkn318

By:

Al-Shahrour, Fátima;
Carbonell, José;
Minguez, Pablo;
Goetz, Stefan;
Conesa, Ana;
Tárraga, Joaquín;
Medina, Ignacio;
Alloza, Eva;
Montaner, David;
Dopazo, Joaquín

Publication type:

Article

BioLit: integrating biological literature with databases.

Published in:

Nucleic Acids Research, 2008, v. 36, n. suppl_2, p. W385, doi. 10.1093/nar/gkn317

By:

Fink, J. Lynn;
Kushch, Sergey;
Williams, Parker R.;
Bourne, Philip E.

Publication type:

Article

IMGT/V-QUEST: the highly customized and integrated system for IG and TR standardized V-J and V-D-J sequence analysis.

Published in:

Nucleic Acids Research, 2008, v. 36, n. suppl_2, p. W503, doi. 10.1093/nar/gkn316

By:

Brochet, Xavier;
Lefranc, Marie-Paule;
Giudicelli, Véronique

Publication type:

Article

The University of Minnesota pathway prediction system: predicting metabolic logic.

Published in:

Nucleic Acids Research, 2008, v. 36, n. suppl_2, p. W427, doi. 10.1093/nar/gkn315

By:

Ellis, Lynda B.M.;
Gao, Junfeng;
Fenner, Kathrin;
Wackett, Lawrence P.

Publication type:

Article

PBEQ-Solver for online visualization of electrostatic potential of biomolecules.

Published in:

Nucleic Acids Research, 2008, v. 36, n. suppl_2, p. W270, doi. 10.1093/nar/gkn314

By:

Jo, Sunhwan;
Vargyas, Miklos;
Vasko-Szedlar, Judit;
Roux, Benoît;
Im, Wonpil

Publication type:

Article

3D-Fun: predicting enzyme function from structure.

Published in:

Nucleic Acids Research, 2008, v. 36, n. suppl_2, p. W303, doi. 10.1093/nar/gkn308

By:

von Grotthuss, Marcin;
Plewczynski, Dariusz;
Vriend, Gert;
Rychlewski, Leszek

Publication type:

Article

SuperPred: drug classification and target prediction.

Published in:

Nucleic Acids Research, 2008, v. 36, n. suppl_2, p. W55, doi. 10.1093/nar/gkn307

By:

Dunkel, Mathias;
Günther, Stefan;
Ahmed, Jessica;
Wittig, Burghardt;
Preissner, Robert

Publication type:

Article

CS23D: a web server for rapid protein structure generation using NMR chemical shifts and sequence data.

Published in:

Nucleic Acids Research, 2008, v. 36, n. suppl_2, p. W496, doi. 10.1093/nar/gkn305

By:

Wishart, David S.;
Arndt, David;
Berjanskii, Mark;
Tang, Peter;
Zhou, Jianjun;
Lin, Guohui

Publication type:

Article

RSAT: regulatory sequence analysis tools.

Published in:

Nucleic Acids Research, 2008, v. 36, n. suppl_2, p. W119, doi. 10.1093/nar/gkn304

By:

Thomas-Chollier, Morgane;
Sand, Olivier;
Turatsinze, Jean-Valéry;
Janky, Rekin's;
Defrance, Matthieu;
Vervisch, Eric;
Brohée, Sylvain;
van Helden, Jacques

Publication type:

Article

GEPAS, a web-based tool for microarray data analysis and interpretation.

Published in:

Nucleic Acids Research, 2008, v. 36, n. suppl_2, p. W308, doi. 10.1093/nar/gkn303

By:

Tárraga, Joaquín;
Medina, Ignacio;
Carbonell, José;
Huerta-Cepas, Jaime;
Minguez, Pablo;
Alloza, Eva;
Al-Shahrour, Fátima;
Vegas-Azcárate, Susana;
Goetz, Stefan;
Escobar, Pablo;
Garcia-Garcia, Francisco;
Conesa, Ana;
Montaner, David;
Dopazo, Joaquín

Publication type:

Article

DiRE: identifying distant regulatory elements of co-expressed genes.

Published in:

Nucleic Acids Research, 2008, v. 36, n. suppl_2, p. W133, doi. 10.1093/nar/gkn300

By:

Gotea, Valer;
Ovcharenko, Ivan

Publication type:

Article

pssRNAMiner: a plant short small RNA regulatory cascade analysis server.

Published in:

Nucleic Acids Research, 2008, v. 36, n. suppl_2, p. W114, doi. 10.1093/nar/gkn297

By:

Dai, Xinbin;
Zhao, Patrick Xuechun

Publication type:

Article

PolySearch: a web-based text mining system for extracting relationships between human diseases, genes, mutations, drugs and metabolites.

Published in:

Nucleic Acids Research, 2008, v. 36, n. suppl_2, p. W399, doi. 10.1093/nar/gkn296

By:

Cheng, Dean;
Knox, Craig;
Young, Nelson;
Stothard, Paul;
Damaraju, Sambasivarao;
Wishart, David S.

Publication type:

Article

QUMA: quantification tool for methylation analysis.

Published in:

Nucleic Acids Research, 2008, v. 36, n. suppl_2, p. W170, doi. 10.1093/nar/gkn294

By:

Kumaki, Yuichi;
Oda, Masaaki;
Okano, Masaki

Publication type:

Article

Uprobe 2008: an online resource for universal overgo hybridization-based probe retrieval and design†.

Published in:

Nucleic Acids Research, 2008, v. 36, n. suppl_2, p. W149

By:

Sullivan, Robert T.;
Morehouse, Caroline B.;
Thomas, James W.

Publication type:

Article

GeneCAT—novel webtools that combine BLAST and co-expression analyses.

Published in:

Nucleic Acids Research, 2008, v. 36, n. suppl_2, p. W320, doi. 10.1093/nar/gkn292

By:

Mutwil, Marek;
Øbro, Jens;
Willats, William G. T.;
Persson, Staffan

Publication type:

Article

MADNet: microarray database network web server.

Published in:

Nucleic Acids Research, 2008, v. 36, n. suppl_2, p. W332, doi. 10.1093/nar/gkn289

By:

Šegota, Igor;
Bartoniček, Nenad;
Vlahoviček, Kristian

Publication type:

Article

E3Miner: a text mining tool for ubiquitin-protein ligases.

Published in:

Nucleic Acids Research, 2008, v. 36, n. suppl_2, p. W416, doi. 10.1093/nar/gkn286

By:

Lee, Hodong;
Yi, Gwan-Su;
Park, Jong C.

Publication type:

Article

Superimposé: a 3D structural superposition server.

Published in:

Nucleic Acids Research, 2008, v. 36, n. suppl_2, p. W47, doi. 10.1093/nar/gkn285

By:

Bauer, Raphael A.;
Bourne, Philip E.;
Formella, Arno;
Frömmel, Cornelius;
Gille, Christoph;
Goede, Andrean;
Guerler, Aysam;
Hoppe, Andreas;
Knapp, Ernst-Walter;
Pöschel, Thorsten;
Wittig, Burghardt;
Ziegler, Valentin;
Preissner, Robert

Publication type:

Article

Comparative Pathway Analyzer—a web server for comparative analysis, clustering and visualization of metabolic networks in multiple organisms.

Published in:

Nucleic Acids Research, 2008, v. 36, n. suppl_2, p. W433, doi. 10.1093/nar/gkn284

By:

Oehm, Sebastian;
Gilbert, David;
Tauch, Andreas;
Stoye, Jens;
Goesmann, Alexander

Publication type:

Article

xREI: a phylo-grammar visualization webserver.

Published in:

Nucleic Acids Research, 2008, v. 36, n. suppl_2, p. W65, doi. 10.1093/nar/gkn283

By:

Barquist, Lars;
Holmes, Ian

Publication type:

Article

KEGG Atlas mapping for global analysis of metabolic pathways.

Published in:

Nucleic Acids Research, 2008, v. 36, n. suppl_2, p. W423, doi. 10.1093/nar/gkn282

By:

Okuda, Shujiro;
Yamada, Takuji;
Hamajima, Masami;
Itoh, Masumi;
Katayama, Toshiaki;
Bork, Peer;
Goto, Susumu;
Kanehisa, Minoru

Publication type:

Article

PIE: an online prediction system for protein–protein interactions from text.

Published in:

Nucleic Acids Research, 2008, v. 36, n. suppl_2, p. W411, doi. 10.1093/nar/gkn281

By:

Kim, Sun;
Shin, Soo-Yong;
Lee, In-Hee;
Kim, Soo-Jin;
Sriram, Ram;
Zhang, Byoung-Tak

Publication type:

Article

AsiDesigner: exon-based siRNA design server considering alternative splicing.

Published in:

Nucleic Acids Research, 2008, v. 36, n. suppl_2, p. W97, doi. 10.1093/nar/gkn280

By:

Park, Young-Kyu;
Park, Seong-Min;
Choi, Young-Chul;
Lee, Doheon;
Won, Misun;
Kim, Young Joo

Publication type:

Article

The Predikin webserver: improved prediction of protein kinase peptide specificity using structural information.

Published in:

Nucleic Acids Research, 2008, v. 36, n. suppl_2, p. W286, doi. 10.1093/nar/gkn279

By:

Saunders, Neil F. W.;
Kobe, Bostjan

Publication type:

Article

R-Coffee: a web server for accurately aligning noncoding RNA sequences.

Published in:

Nucleic Acids Research, 2008, v. 36, n. suppl_2, p. W10, doi. 10.1093/nar/gkn278

By:

Moretti, Sébastien;
Wilm, Andreas;
Higgins, Desmond G.;
Xenarios, Ioannis;
Notredame, Cédric

Publication type:

Article

Signature, a web server for taxonomic characterization of sequence samples using signature genes.

Published in:

Nucleic Acids Research, 2008, v. 36, n. suppl_2, p. W470, doi. 10.1093/nar/gkn277

By:

Dutilh, Bas E.;
He, Ying;
Hekkelman, Maarten L.;
Huynen, Martijn A.

Publication type:

Article

GOEAST: a web-based software toolkit for Gene Ontology enrichment analysis.

Published in:

Nucleic Acids Research, 2008, v. 36, n. suppl_2, p. W358, doi. 10.1093/nar/gkn276

By:

Zheng, Qi;
Wang, Xiu-Jie

Publication type:

Article

WAR: Webserver for aligning structural RNAs.

Published in:

Nucleic Acids Research, 2008, v. 36, n. suppl_2, p. W79, doi. 10.1093/nar/gkn275

By:

Torarinsson, Elfar;
Lindgreen, Stinus

Publication type:

Article

soaPDB: a web application for searching the Protein Data Bank, organizing results, and receiving automatic email alerts.

Published in:

Nucleic Acids Research, 2008, v. 36, n. suppl_2, p. W252, doi. 10.1093/nar/gkn270

By:

Lesburg, Charles A.;
Duca, José S.

Publication type:

Article

AMIC@: All MIcroarray Clusterings @ once.

Published in:

Nucleic Acids Research, 2008, v. 36, n. suppl_2, p. W315, doi. 10.1093/nar/gkn265

By:

Geraci, Filippo;
Pellegrini, Marco;
Renda, M. Elena

Publication type:

Article

TargetRNA: a tool for predicting targets of small RNA action in bacteria.

Published in:

Nucleic Acids Research, 2008, v. 36, n. suppl_2, p. W109, doi. 10.1093/nar/gkn264

By:

Tjaden, Brian

Publication type:

Article

pFlexAna: detecting conformational changes in remotely related proteins.

Published in:

Nucleic Acids Research, 2008, v. 36, n. suppl_2, p. W246, doi. 10.1093/nar/gkn259

By:

Nigham, Anshul;
Tucker-Kellogg, Lisa;
Mihalek, Ivana;
Verma, Chandra;
Hsu, David

Publication type:

Article