Works matching IS 03051048 AND DT 2008 AND VI 36 AND IP 8

Results: 33

Exalign: a new method for comparative analysis of exon–intron gene structures.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 8, p. e47, doi. 10.1093/nar/gkn153

By:

Pavesi, Giulio;
Zambelli, Federico;
Caggese, Corrado;
Pesole, Graziano

Publication type:

Article

A BBP–Mud2p heterodimer mediates branchpoint recognition and influences splicing substrate abundance in budding yeast.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 8, p. 2787, doi. 10.1093/nar/gkn144

By:

Wang, Qiang;
Zhang, Li;
Lynn, Bert;
Rymond, Brian C.

Publication type:

Article

Detecting cis-regulatory binding sites for cooperatively binding proteins.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 8, p. e46, doi. 10.1093/nar/gkn140

By:

van Oeffelen, Liesbeth;
Cornelis, Pierre;
Van Delm, Wouter;
De Ridder, Fedor;
De Moor, Bart;
Moreau, Yves

Publication type:

Article

The biological function of some human transcription factor binding motifs varies with position relative to the transcription start site.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 8, p. 2777, doi. 10.1093/nar/gkn137

By:

Tharakaraman, Kannan;
Bodenreider, Olivier;
Landsman, David;
Spouge, John L.;
Mariño-Ramírez, Leonardo

Publication type:

Article

Structural probing of the HIV-1 polypurine tract RNA:DNA hybrid using classic nucleic acid ligands.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 8, p. 2799, doi. 10.1093/nar/gkn129

By:

Turner, Kevin B.;
Brinson, Robert G.;
Yi-Brunozzi, Hye Young;
Rausch, Jason W.;
Miller, Jennifer T.;
Le Grice, Stuart F.J.;
Marino, John P.;
Fabris, Daniele

Publication type:

Article

Small ncRNA transcriptome analysis from Aspergillus fumigatus suggests a novel mechanism for regulation of protein synthesis.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 8, p. 2677, doi. 10.1093/nar/gkn123

By:

Jöchl, Christoph;
Rederstorff, Mathieu;
Hertel, Jana;
Stadler, Peter F.;
Hofacker, Ivo L.;
Schrettl, Markus;
Haas, Hubertus;
Hüttenhofer, Alexander

Publication type:

Article

Autoregulation of the Escherichia coli melR promoter: repression involves four molecules of MelR.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 8, p. 2667, doi. 10.1093/nar/gkn119

By:

Samarasinghe, Shivanthi;
El-Robh, Mohamed Samir;
Grainger, David C.;
Zhang, Wenke;
Soultanas, Panos;
Busby, Stephen J. W.

Publication type:

Article

Human abasic endonuclease action on multilesion abasic clusters: implications for radiation-induced biological damage.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 8, p. 2717, doi. 10.1093/nar/gkn118

By:

Paap, Brigitte;
Wilson, David M.;
Sutherland, Betsy M.

Publication type:

Article

Determinants of a transcriptionally competent environment at the GM-CSF promoter.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 8, p. 2639, doi. 10.1093/nar/gkn117

By:

Brettingham-Moore, K. H.;
Sprod, O. R.;
Chen, X.;
Oakford, P.;
Shannon, M. F.;
Holloway, A. F.

Publication type:

Article

Intracellular delivery of an anionic antisense oligonucleotide via receptor-mediated endocytosis.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 8, p. 2764, doi. 10.1093/nar/gkn115

By:

Alam, Md Rowshon;
Dixit, Vidula;
Kang, Hyunmin;
Li, Zi-Bo;
Chen, Xiaoyuan;
Trejo, JoAnn;
Fisher, Michael;
Juliano, Rudy L.

Publication type:

Article

The bacterial and mitochondrial ribosomal A-site molecular switches possess different conformational substates.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 8, p. 2654, doi. 10.1093/nar/gkn112

By:

Kondo, Jiro;
Westhof, Eric

Publication type:

Article

A dual-tag microarray platform for high-performance nucleic acid and protein analyses.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 8, p. e45, doi. 10.1093/nar/gkn106

By:

Ericsson, Olle;
Jarvius, Jonas;
Schallmeiner, Edith;
Howell, Mathias;
Nong, Rachel Yuan;
Reuter, Hendrik;
Hahn, Meinhard;
Stenberg, Johan;
Nilsson, Mats;
Landegren, Ulf

Publication type:

Article

A space-efficient and accurate method for mapping and aligning cDNA sequences onto genomic sequence.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 8, p. 2630, doi. 10.1093/nar/gkn105

By:

Gotoh, Osamu

Publication type:

Article

Sequence homology and microhomology dominate chromosomal double-strand break repair in African trypanosomes.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 8, p. 2608, doi. 10.1093/nar/gkn104

By:

Glover, Lucy;
McCulloch, Richard;
Horn, David

Publication type:

Article

Dissecting protein–RNA recognition sites.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 8, p. 2705, doi. 10.1093/nar/gkn102

By:

Bahadur, Ranjit Prasad;
Zacharias, Martin;
Janin, Joël

Publication type:

Article

A new kinetic model reveals the synergistic effect of E-, P- and A-sites on +1 ribosomal frameshifting.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 8, p. 2619, doi. 10.1093/nar/gkn100

By:

Liao, Pei-Yu;
Gupta, Prateek;
Petrov, Alexey N.;
Dinman, Jonathan D.;
Lee, Kelvin H.

Publication type:

Article

Mitogen-induced recruitment of ERK and MSK to SRE promoter complexes by ternary complex factor Elk-1.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 8, p. 2594, doi. 10.1093/nar/gkn099

By:

Zhang, Hong-Mei;
Li, Li;
Papadopoulou, Nektaria;
Hodgson, Glenn;
Evans, Emma;
Galbraith, Matthew;
Dear, Mark;
Vougier, Stéphanie;
Saxton, Janice;
Shaw, Peter E.

Publication type:

Article

Real-time kinetics of restriction–modification gene expression after entry into a new host cell.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 8, p. 2581, doi. 10.1093/nar/gkn097

By:

Mruk, Iwona;
Blumenthal, Robert M.

Publication type:

Article

Bioinformatic and functional analysis of RNA secondary structure elements among different genera of human and animal caliciviruses.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 8, p. 2530, doi. 10.1093/nar/gkn096

By:

Simmonds, Peter;
Karakasiliotis, Ioannis;
Bailey, Dalan;
Chaudhry, Yasmin;
Evans, David J.;
Goodfellow, Ian G.

Publication type:

Article

Distinct roles of XRCC4 and Ku80 in non-homologous end-joining of endonuclease- and ionizing radiation-induced DNA double-strand breaks.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 8, p. 2561, doi. 10.1093/nar/gkn094

By:

Schulte-Uentrop, Leonie;
El-Awady, Raafat A.;
Schliecker, Lena;
Willers, Henning;
Dahm-Daphi, Jochen

Publication type:

Article

The small RNA GlmY acts upstream of the sRNA GlmZ in the activation of glmS expression and is subject to regulation by polyadenylation in Escherichia coli.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 8, p. 2570, doi. 10.1093/nar/gkn091

By:

Reichenbach, Birte;
Maes, Alexandre;
Kalamorz, Falk;
Hajnsdorf, Eliane;
Görke, Boris

Publication type:

Article

Spontaneous symmetry breaking in genome evolution.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 8, p. 2756, doi. 10.1093/nar/gkn086

By:

Ryabov, Yaroslav;
Gribskov, Michael

Publication type:

Article

The relationship of potential G-quadruplex sequences in cis-upstream regions of the human genome to SP1-binding elements.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 8, p. 2700, doi. 10.1093/nar/gkn078

By:

Todd, Alan K.;
Neidle, Stephen

Publication type:

Article

Combined in silico and experimental identification of the Pyrococcus abyssi H/ACA sRNAs and their target sites in ribosomal RNAs.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 8, p. 2459, doi. 10.1093/nar/gkn077

By:

Muller, Sébastien;
Leclerc, Fabrice;
Behm-Ansmant, Isabelle;
Fourmann, Jean-Baptiste;
Charpentier, Bruno;
Branlant, Christiane

Publication type:

Article

Single-molecule manipulation reveals supercoiling-dependent modulation of lac repressor-mediated DNA looping.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 8, p. 2505, doi. 10.1093/nar/gkn071

By:

Normanno, Davide;
Vanzi, Francesco;
Pavone, Francesco Saverio

Publication type:

Article

Two conserved modules of Schizosaccharomyces pombe Mediator regulate distinct cellular pathways.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 8, p. 2489, doi. 10.1093/nar/gkn070

By:

Linder, Tomas;
Rasmussen, Nina N.;
Samuelsen, Camilla O.;
Chatzidaki, Emmanouella;
Baraznenok, Vera;
Beve, Jenny;
Henriksen, Peter;
Gustafsson, Claes M.;
Holmberg, Steen

Publication type:

Article

Evolution of acceptor stem tRNA recognition by class II prolyl-tRNA synthetase.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 8, p. 2514

By:

An, Songon;
Barany, George;
Musier-Forsyth, Karin

Publication type:

Article

A systematic characterization of factors that regulate Drosophila segmentation via a bacterial one-hybrid system.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 8, p. 2547, doi. 10.1093/nar/gkn048

By:

Noyes, Marcus B.;
Meng, Xiangdong;
Wakabayashi, Atsuya;
Sinha, Saurabh;
Brodsky, Michael H.;
Wolfe, Scot A.

Publication type:

Article

Transforming growth factor-β-regulated miR-24 promotes skeletal muscle differentiation.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 8, p. 2690, doi. 10.1093/nar/gkn032

By:

Sun, Qiang;
Zhang, Yan;
Yang, Guang;
Chen, Xiaoping;
Zhang, Yingai;
Cao, Guojun;
Wang, Jian;
Sun, Yanxun;
Zhang, Peng;
Fan, Ming;
Shao, Ningsheng;
Yang, Xiao

Publication type:

Article

Structure of the DNA-binding domain of NgTRF1 reveals unique features of plant telomere-binding proteins.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 8, p. 2739, doi. 10.1093/nar/gkn030

By:

Ko, Sunggeon;
Jun, Sung-Hoon;
Bae, Hansol;
Byun, Jung-Sue;
Han, Woong;
Park, Heeyoung;
Yang, Seong Wook;
Park, Sam-Yong;
Jeon, Young Ho;
Cheong, Chaejoon;
Kim, Woo Taek;
Lee, Weontae;
Cho, Hyun-Soo

Publication type:

Article

Recognition of tRNALeu by Aquifex aeolicus leucyl-tRNA synthetase during the aminoacylation and editing steps.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 8, p. 2728, doi. 10.1093/nar/gkn028

By:

Yao, Peng;
Zhu, Bin;
Jaeger, Sophie;
Eriani, Gilbert;
Wang, En-Duo

Publication type:

Article

Step-wise formation of eukaryotic double-row polyribosomes and circular translation of polysomal mRNA.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 8, p. 2476, doi. 10.1093/nar/gkm1177

By:

Kopeina, Gelina S.;
Afonina, Zhanna A.;
Gromova, Kira V.;
Shirokov, Vladimir A.;
Vasiliev, Victor D.;
Spirin, Alexander S.

Publication type:

Article

Molecular dissection of Penelope transposable element regulatory machinery.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 8, p. 2522, doi. 10.1093/nar/gkm1166

By:

Schostak, Nataliya;
Pyatkov, Konstantin;
Zelentsova, Elena;
Arkhipova, Irina;
Shagin, Dmitrii;
Shagina, Irina;
Mudrik, Elena;
Blintsov, Anatolii;
Clark, Ivan;
Finnegan, David J.;
Evgen’ev, Michael

Publication type:

Article