Works matching IS 03051048 AND DT 2008 AND VI 36 AND IP 7

Results: 38

Positional gene enrichment analysis of gene sets for high-resolution identification of overrepresented chromosomal regions.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 7, p. e43, doi. 10.1093/nar/gkn114

By:

De Preter, Katleen;
Barriot, Roland;
Speleman, Frank;
Vandesompele, Jo;
Moreau, Yves

Publication type:

Article

Sensitive Melting Analysis after Real Time- Methylation Specific PCR (SMART-MSP): high-throughput and probe-free quantitative DNA methylation detection.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 7, p. e42, doi. 10.1093/nar/gkn113

By:

Kristensen, Lasse S.;
Mikeska, Thomas;
Krypuy, Michael;
Dobrovic, Alexander

Publication type:

Article

wuHMM: a robust algorithm to detect DNA copy number variation using long oligonucleotide microarray data.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 7, p. e41, doi. 10.1093/nar/gkn110

By:

Cahan, Patrick;
Godfrey, Laura E.;
Eis, Peggy S.;
Richmond, Todd A.;
Selzer, Rebecca R.;
Brent, Michael;
McLeod, Howard L.;
Ley, Timothy J.;
Graubert, Timothy A.

Publication type:

Article

Labeling of unique sequences in double-stranded DNA at sites of vicinal nicks generated by nicking endonucleases.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 7, p. e40, doi. 10.1093/nar/gkn107

By:

Kuhn, Heiko;
Frank-Kamenetskii, Maxim D.

Publication type:

Article

Generation of ρ0 cells utilizing a mitochondrially targeted restriction endonuclease and comparative analyses.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 7, p. e44, doi. 10.1093/nar/gkn124

By:

Kukat, Alexandra;
Kukat, Christian;
Brocher, Jan;
Schäfer, Ingo;
Krohne, Georg;
Trounce, Ian A.;
Villani, Gaetano;
Seibel, Peter

Publication type:

Article

The Molecule Pages Database.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 7, p. 2457, doi. 10.1093/nar/gkn139

By:

Saunders, Brian;
Lyon, Stephen;
Day, Matthew;
Riley, Brenda;
Chenette, Emily;
Subramaniam, Shankar

Publication type:

Article

High-resolution array comparative genomic hybridization of single micrometastatic tumor cells.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 7, p. e39, doi. 10.1093/nar/gkn101

By:

Fuhrmann, Christine;
Schmidt-Kittler, Oleg;
Stoecklein, Nikolas H.;
Petat-Dutter, Karina;
Vay, Christian;
Bockler, Kerstin;
Reinhardt, Richard;
Ragg, Thomas;
Klein, Christoph A.

Publication type:

Article

An upstream open reading frame within an IRES controls expression of a specific VEGF-A isoform.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 7, p. 2434, doi. 10.1093/nar/gkn093

By:

Bastide, Amandine;
Karaa, Zeineb;
Bornes, Stéphanie;
Hieblot, Corinne;
Lacazette, Eric;
Prats, Hervé;
Touriol, Christian

Publication type:

Article

SNP panel identification assay (SPIA): a genetic-based assay for the identification of cell lines.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 7, p. 2446, doi. 10.1093/nar/gkn089

By:

Demichelis, Francesca;
Greulich, Heidi;
Macoska, Jill A.;
Beroukhim, Rameen;
Sellers, William R.;
Garraway, Levi;
Rubin, Mark A.

Publication type:

Article

Solution structure of a let-7 miRNA:lin-41 mRNA complex from C. elegans.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 7, p. 2330, doi. 10.1093/nar/gkn088

By:

Cevec, Mirko;
Thibaudeau, Christophe;
Plavec, Janez

Publication type:

Article

Specificity of DNA microarray hybridization: characterization, effectors and approaches for data correction.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 7, p. 2395, doi. 10.1093/nar/gkn087

By:

Koltai, Hinanit;
Weingarten-Baror, Carmiya

Publication type:

Article

Position effect variegation and imprinting of transgenes in lymphocytes.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 7, p. 2320, doi. 10.1093/nar/gkn085

By:

Williams, Adam;
Harker, Nicola;
Ktistaki, Eleni;
Veiga-Fernandes, Henrique;
Roderick, Kathleen;
Tolaini, Mauro;
Norton, Trisha;
Williams, Keith;
Kioussis, Dimitris

Publication type:

Article

Elevated α-synuclein mRNA levels in individual UV-laser-microdissected dopaminergic substantia nigra neurons in idiopathic Parkinson's disease.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 7, p. e38, doi. 10.1093/nar/gkn084

By:

Gründemann, Jan;
Schlaudraff, Falk;
Haeckel, Olga;
Liss, Birgit

Publication type:

Article

Towards a molecular dynamics consensus view of B-DNA flexibility.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 7, p. 2379, doi. 10.1093/nar/gkn082

By:

Pérez, Alberto;
Lankas, Filip;
Luque, F. Javier;
Orozco, Modesto

Publication type:

Article

The complete nucleotide sequences of the five genetically distinct plastid genomes of Oenothera, subsection Oenothera: I. Sequence evaluation and plastome evolution†.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 7, p. 2366, doi. 10.1093/nar/gkn081

By:

Greiner, Stephan;
Wang, Xi;
Rauwolf, Uwe;
Silber, Martina V.;
Mayer, Klaus;
Meurer, Jörg;
Haberer, Georg;
Herrmann, Reinhold G.

Publication type:

Article

Molecular dissection of mRNA poly(A) tail length control in yeast.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 7, p. 2418, doi. 10.1093/nar/gkn080

By:

Viphakone, Nicolas;
Voisinet-Hakil, Florence;
Minvielle-Sebastia, Lionel

Publication type:

Article

Identification of functional microRNAs released through asymmetrical processing of HIV-1 TAR element†.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 7, p. 2353, doi. 10.1093/nar/gkn076

By:

Ouellet, Dominique L.;
Plante, Isabelle;
Landry, Patricia;
Barat, Corinne;
Janelle, Marie-Ève;
Flamand, Louis;
Tremblay, Michel J.;
Provost, Patrick

Publication type:

Article

Human branch point consensus sequence is yUnAy.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 7, p. 2257, doi. 10.1093/nar/gkn073

By:

Gao, Kaiping;
Masuda, Akio;
Matsuura, Tohru;
Ohno, Kinji

Publication type:

Article

PROMALS3D: a tool for multiple protein sequence and structure alignments.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 7, p. 2295, doi. 10.1093/nar/gkn072

By:

Pei, Jimin;
Kim, Bong-Hyun;
Grishin, Nick V.

Publication type:

Article

Nucleocapsid mutations turn HIV-1 into a DNA-containing virus.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 7, p. 2311, doi. 10.1093/nar/gkn069

By:

Houzet, Laurent;
Morichaud, Zakia;
Didierlaurent, Ludovic;
Muriaux, Delphine;
Darlix, Jean-Luc;
Mougel, Marylène

Publication type:

Article

Requirements for gene silencing mediated by U1 snRNA binding to a target sequence.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 7, p. 2338, doi. 10.1093/nar/gkn068

By:

Abad, Xabi;
Vera, Maria;
Jung, Stephen P.;
Oswald, Evelyn;
Romero, Inés;
Amin, Vaibhav;
Fortes, Puri;
Gunderson, Samuel I.

Publication type:

Article

Binding of sulphonated indigo derivatives to RepA-WH1 inhibits DNA-induced protein amyloidogenesis.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 7, p. 2249, doi. 10.1093/nar/gkn067

By:

Gasset-Rosa, Fátima;
Maté, María Jesús;
Dávila-Fajardo, Cristina;
Bravo, Jerónimo;
Giraldo, Rafael

Publication type:

Article

Accurate statistical model of comparison between multiple sequence alignments.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 7, p. 2240, doi. 10.1093/nar/gkn065

By:

Sadreyev, Ruslan I.;
Grishin, Nick V.

Publication type:

Article

Empirical comparison of ab initio repeat finding programs.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 7, p. 2284, doi. 10.1093/nar/gkn064

By:

Saha, Surya;
Bridges, Susan;
Magbanua, Zenaida V.;
Peterson, Daniel G.

Publication type:

Article

Trace amounts of 8-oxo-dGTP in mitochondrial dNTP pools reduce DNA polymerase γ replication fidelity.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 7, p. 2174, doi. 10.1093/nar/gkn062

By:

Pursell, Zachary F.;
McDonald, J. Tyson;
Mathews, Christopher K.;
Kunkel, Thomas A.

Publication type:

Article

LARP7 is a stable component of the 7SK snRNP while P-TEFb, HEXIM1 and hnRNP A1 are reversibly associated.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 7, p. 2219, doi. 10.1093/nar/gkn061

By:

Krueger, Brian J.;
Jeronimo, Célia;
Roy, Bibhuti Bhusan;
Bouchard, Annie;
Barrandon, Charlotte;
Byers, Sarah A.;
Searcey, Courtney E.;
Cooper, Jeffrey J.;
Bensaude, Olivier;
Cohen, Éric A.;
Coulombe, Benoit;
Price, David H.

Publication type:

Article

Nucleosome formation with the testis-specific histone H3 variant, H3t, by human nucleosome assembly proteins in vitro.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 7, p. 2208, doi. 10.1093/nar/gkn060

By:

Tachiwana, Hiroaki;
Osakabe, Akihisa;
Kimura, Hiroshi;
Kurumizaka, Hitoshi

Publication type:

Article

Computer design of obligate heterodimer meganucleases allows efficient cutting of custom DNA sequences.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 7, p. 2163, doi. 10.1093/nar/gkn059

By:

Fajardo-Sanchez, Emmanuel;
Stricher, François;
Pâques, Frédéric;
Isalan, Mark;
Serrano, Luis

Publication type:

Article

Eukaryotic Y-family polymerases bypass a 3-methyl-2′-deoxyadenosine analog in vitro and methyl methanesulfonate-induced DNA damage in vivo.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 7, p. 2152, doi. 10.1093/nar/gkn058

By:

Plosky, Brian S.;
Frank, Ekaterina G.;
Berry, David A.;
Vennall, Graham P.;
McDonald, John P.;
Woodgate, Roger

Publication type:

Article

Epigenetics of a tandem DNA repeat: chromatin DNaseI sensitivity and opposite methylation changes in cancers.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 7, p. 2196, doi. 10.1093/nar/gkn055

By:

Tsumagari, Koji;
Qi, Lixin;
Jackson, Kesmic;
Shao, Chunbo;
Lacey, Michelle;
Sowden, Janet;
Tawil, Rabi;
Vedanarayanan, Vettaikorumakankav;
Ehrlich, Melanie

Publication type:

Article

PARTS: Probabilistic Alignment for RNA joinT Secondary structure prediction.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 7, p. 2406, doi. 10.1093/nar/gkn043

By:

Harmanci, Arif Ozgun;
Sharma, Gaurav;
Mathews, David H.

Publication type:

Article

Functional dissection of siRNA sequence by systematic DNA substitution: modified siRNA with a DNA seed arm is a powerful tool for mammalian gene silencing with significantly reduced off-target effect.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 7, p. 2136, doi. 10.1093/nar/gkn042

By:

Ui-Tei, Kumiko;
Naito, Yuki;
Zenno, Shuhei;
Nishi, Kenji;
Yamato, Kenji;
Takahashi, Fumitaka;
Juni, Aya;
Saigo, Kaoru

Publication type:

Article

Phylogenetic classification of short environmental DNA fragments.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 7, p. 2230, doi. 10.1093/nar/gkn038

By:

Krause, Lutz;
Diaz, Naryttza N.;
Goesmann, Alexander;
Kelley, Scott;
Nattkemper, Tim W.;
Rohwer, Forest;
Edwards, Robert A.;
Stoye, Jens

Publication type:

Article

Single-molecule observations of topotecan-mediated TopIB activity at a unique DNA sequence.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 7, p. 2301, doi. 10.1093/nar/gkn035

By:

Koster, Daniel A.;
Czerwinski, Fabian;
Halby, Ludovic;
Crut, Aurélien;
Vekhoff, Pierre;
Palle, Komaraiah;
Arimondo, Paola B.;
Dekker, Nynke H.

Publication type:

Article

Lsr2 of Mycobacterium tuberculosis is a DNA-bridging protein.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 7, p. 2123, doi. 10.1093/nar/gkm1162

By:

Chen, Jeffrey M.;
Ren, Huiping;
Shaw, James E.;
Wang, Yu Jing;
Li, Ming;
Leung, Andrea S.;
Tran, Vanessa;
Berbenetz, Nicolas M.;
Kocíncová, Dana;
Yip, Christopher M.;
Reyrat, Jean-Marc;
Liu, Jun

Publication type:

Article

Saccharomyces cerevisiae Mus81-Mms4 is a catalytic, DNA structure-selective endonuclease.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 7, p. 2182, doi. 10.1093/nar/gkm1152

By:

Ehmsen, Kirk Tevebaugh;
Heyer, Wolf-Dietrich

Publication type:

Article

PDZ domain-mediated dimerization and homeodomain-directed specificity are required for high-affinity DNA binding by SATB1.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 7, p. 2107, doi. 10.1093/nar/gkm1151

By:

Purbey, Prabhat Kumar;
Singh, Sunita;
Kumar, P. Pavan;
Mehta, Sameet;
Ganesh, K. N.;
Mitra, Debashis;
Galande, Sanjeev

Publication type:

Article

Magnitude and direction of DNA bending induced by screw-axis orientation: influence of sequence, mismatches and abasic sites.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 7, p. 2268, doi. 10.1093/nar/gkm1135

By:

Curuksu, Jeremy;
Zakrzewska, Krystyna;
Zacharias, Martin

Publication type:

Article