Works matching IS 03051048 AND DT 2008 AND VI 36 AND IP 5

Results: 39

Bisulfite sequencing Data Presentation and Compilation (BDPC) web server—a useful tool for DNA methylation analysis.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 5, p. e34, doi. 10.1093/nar/gkn083

By:

Rohde, Christian;
Zhang, Yingying;
Jurkowski, Tomasz P.;
Stamerjohanns, Heinrich;
Reinhardt, Richard;
Jeltsch, Albert

Publication type:

Article

Performance comparison between k-tuple distance and four model-based distances in phylogenetic tree reconstruction.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 5, p. e33, doi. 10.1093/nar/gkn075

By:

Yang, Kuan;
Zhang, Liqing

Publication type:

Article

The use of multiple displacement amplification to amplify complex DNA libraries.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 5, p. e32, doi. 10.1093/nar/gkn074

By:

Fullwood, Melissa J.;
Tan, Jack J. S.;
Ng, Patrick W. P.;
Chiu, Kuo Ping;
Liu, Jun;
Wei, Chia Lin;
Ruan, Yijun

Publication type:

Article

Facile SNP detection using bifunctional, cross-linking oligonucleotide probes.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 5, p. e31, doi. 10.1093/nar/gkn052

By:

Peng, Xiaohua;
Greenberg, Marc M.

Publication type:

Article

Target accessibility and signal specificity in live-cell detection of BMP-4 mRNA using molecular beacons.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 5, p. e30, doi. 10.1093/nar/gkn039

By:

Rhee, Won Jong;
Santangelo, Philip J.;
Jo, Hanjoong;
Bao, Gang

Publication type:

Article

Role of ATM in the telomere response to the G-quadruplex ligand 360A.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 5, p. 1741, doi. 10.1093/nar/gkn026

By:

Pennarun, Gaëlle;
Granotier, Christine;
Hoffschir, Françoise;
Mandine, Eliane;
Biard, Denis;
Gauthier, Laurent R.;
Boussin, François D.

Publication type:

Article

Substitution of a residue contacting the triphosphate moiety of the incoming nucleotide increases the fidelity of yeast DNA polymerase ζ.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 5, p. 1731, doi. 10.1093/nar/gkn023

By:

Howell, Craig A.;
Kondratick, Christine M.;
Washington, M. Todd

Publication type:

Article

Analysis of transcription factor interactions in osteoblasts using competitive chromatin immunoprecipitation.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 5, p. 1723, doi. 10.1093/nar/gkn022

By:

Roca, Hernan;
Franceschi, Renny T.

Publication type:

Article

Analysis of adenovirus VA RNAI structure and stability using compensatory base pair modifications.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 5, p. 1645, doi. 10.1093/nar/gkn020

By:

Coventry, Veronica K.;
Conn, Graeme L.

Publication type:

Article

Deadenylation-independent stage-specific mRNA degradation in Leishmania.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 5, p. 1634, doi. 10.1093/nar/gkn019

By:

Haile, Simon;
Dupé, Aurélien;
Papadopoulou, Barbara

Publication type:

Article

Probing the mechanism of recognition of ssDNA by the Cdc13-DBD.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 5, p. 1624, doi. 10.1093/nar/gkn017

By:

Eldridge, Aimee M.;
Wuttke, Deborah S.

Publication type:

Article

Interaction of p21CDKN1A with PCNA regulates the histone acetyltransferase activity of p300 in nucleotide excision repair.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 5, p. 1713, doi. 10.1093/nar/gkn014

By:

Cazzalini, Ornella;
Perucca, Paola;
Savio, Monica;
Necchi, Daniela;
Bianchi, Livia;
Stivala, Lucia A.;
Ducommun, Bernard;
Scovassi, A. Ivana;
Prosperi, Ennio

Publication type:

Article

Histone H1 functions as a stimulatory factor in backup pathways of NHEJ.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 5, p. 1610, doi. 10.1093/nar/gkn013

By:

Rosidi, Bustanur;
Wang, Minli;
Wu, Wenqi;
Sharma, Aparna;
Wang, Huichen;
Iliakis, George

Publication type:

Article

Spliceosomal introns as tools for genomic and evolutionary analysis.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 5, p. 1703, doi. 10.1093/nar/gkn012

By:

Irimia, Manuel;
Roy, Scott William

Publication type:

Article

Proton-guided movements of tRNA within the Leishmania mitochondrial RNA import complex.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 5, p. 1599, doi. 10.1093/nar/gkn010

By:

Basu, Sudarshana;
Mukherjee, Saikat;
Adhya, Samit

Publication type:

Article

Functional analysis of the zinc finger and activation domains of Glis3 and mutant Glis3(NDH1).

Published in:

Nucleic Acids Research, 2008, v. 36, n. 5, p. 1690, doi. 10.1093/nar/gkn009

By:

Beak, Ju Youn;
Kang, Hong Soon;
Kim, Yong-Sik;
Jetten, Anton M.

Publication type:

Article

Predicting RNA-binding sites from the protein structure based on electrostatics, evolution and geometry.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 5, p. e29, doi. 10.1093/nar/gkn008

By:

Chen, Yao Chi;
Lim, Carmay

Publication type:

Article

Solution structure of stem-loop α of the hepatitis B virus post-transcriptional regulatory element.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 5, p. 1681, doi. 10.1093/nar/gkn006

By:

Schwalbe, Martin;
Ohlenschläger, Oliver;
Marchanka, Aliaksandr;
Ramachandran, Ramadurai;
Häfner, Sabine;
Heise, Tilman;
Görlach, Matthias

Publication type:

Article

Functional relevance of novel p300-mediated lysine 314 and 315 acetylation of RelA/p65.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 5, p. 1665, doi. 10.1093/nar/gkn003

By:

Buerki, Christine;
Rothgiesser, Karin M.;
Valovka, Taras;
Owen, Heather R.;
Rehrauer, Hubert;
Fey, Monika;
Lane, William S.;
Hottiger, Michael O.

Publication type:

Article

Regulation of the MAD1 promoter by G-CSF.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 5, p. 1517, doi. 10.1093/nar/gkn002

By:

Jiang, Kan;
Hein, Nadine;
Eckert, Kolja;
Lüscher-Firzlaff, Juliane;
Lüscher, Bernhard

Publication type:

Article

Insights into structure, dynamics and hydration of locked nucleic acid (LNA) strand-based duplexes from molecular dynamics simulations.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 5, p. 1508, doi. 10.1093/nar/gkm1182

By:

Pande, Vineet;
Nilsson, Lennart

Publication type:

Article

Pentamidine binds to tRNA through non-specific hydrophobic interactions and inhibits aminoacylation and translation.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 5, p. 1654, doi. 10.1093/nar/gkm1180

By:

Sun, Tao;
Zhang, Yi

Publication type:

Article

rRNA mutants in the yeast peptidyltransferase center reveal allosteric information networks and mechanisms of drug resistance.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 5, p. 1497, doi. 10.1093/nar/gkm1179

By:

Rakauskaitė, Rasa;
Dinman, Jonathan D.

Publication type:

Article

Identification and characterization of coumestans as novel HCV NS5B polymerase inhibitors.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 5, p. 1482, doi. 10.1093/nar/gkm1178

By:

Kaushik-Basu, Neerja;
Bopda-Waffo, Alain;
Talele, Tanaji T.;
Basu, Amartya;
Costa, Paulo R. R.;
da Silva, Alcides J. M.;
Sarafianos, Stefan G.;
Noël, François

Publication type:

Article

Crystal structure of IcaR, a repressor of the TetR family implicated in biofilm formation in Staphylococcus epidermidis.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 5, p. 1567, doi. 10.1093/nar/gkm1176

By:

Jeng, Wen-Yih;
Ko, Tzu-Ping;
Liu, Chia-I;
Guo, Rey-Ting;
Liu, Chien-Liang;
Shr, Hui-Lin;
Wang, Andrew H.-J.

Publication type:

Article

Sequence-function relationships provide new insight into the cleavage site selectivity of the 8–17 RNA-cleaving deoxyribozyme.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 5, p. 1472, doi. 10.1093/nar/gkm1175

By:

Schlosser, Kenny;
Gu, Jimmy;
Sule, Lauren;
Li, Yingfu

Publication type:

Article

Regulation of the human AP-endonuclease (APE1/Ref-1) expression by the tumor suppressor p53 in response to DNA damage.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 5, p. 1555, doi. 10.1093/nar/gkm1173

By:

Zaky, Amira;
Busso, Carlos;
Izumi, Tadahide;
Chattopadhyay, Ranajoy;
Bassiouny, Ahmad;
Mitra, Sankar;
Bhakat, Kishor K.

Publication type:

Article

The crystal structure of Nep1 reveals an extended SPOUT-class methyltransferase fold and a pre-organized SAM-binding site.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 5, p. 1542, doi. 10.1093/nar/gkm1172

By:

Taylor, Alexander B.;
Meyer, Britta;
Leal, Belinda Z.;
Kötter, Peter;
Schirf, Virgil;
Demeler, Borries;
Hart, P. John;
Entian, Karl-Dieter;
Wöhnert, Jens

Publication type:

Article

Discriminating single-base difference miRNA expressions using microarray Probe Design Guru (ProDeG).

Published in:

Nucleic Acids Research, 2008, v. 36, n. 5, p. e27, doi. 10.1093/nar/gkm1165

By:

Lee, Inhan;
Ajay, Subramanian S.;
Chen, Haiming;
Maruyama, Atsushi;
Wang, Nulang;
McInnis, Melvin G.;
Athey, Brian D.

Publication type:

Article

Chiral introduction of positive charges to PNA for double-duplex invasion to versatile sequences.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 5, p. 1464, doi. 10.1093/nar/gkm1154

By:

Ishizuka, Takumi;
Yoshida, Junya;
Yamamoto, Yoji;
Sumaoka, Jun;
Tedeschi, Tullia;
Corradini, Roberto;
Sforza, Stefano;
Komiyama, Makoto

Publication type:

Article

Primary T-lymphocytes rescue the replication of HIV-1 DIS RNA mutants in part by facilitating reverse transcription.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 5, p. 1578, doi. 10.1093/nar/gkm1149

By:

Jones, Kate L.;
Sonza, Secondo;
Mak, Johnson

Publication type:

Article

Insights into the selective activation of alternatively used splice acceptors by the human immunodeficiency virus type-1 bidirectional splicing enhancer.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 5, p. 1450, doi. 10.1093/nar/gkm1147

By:

Asang, Corinna;
Hauber, Ilona;
Schaal, Heiner

Publication type:

Article

Interaction of cationic surfactants with DNA: a single-molecule study.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 5, p. 1443, doi. 10.1093/nar/gkm1146

By:

Husale, Sudhir;
Grange, Wilfried;
Karle, Marc;
Bürgi, Stephan;
Hegner, Martin

Publication type:

Article

Influence of the incorporation of a cyclohexenyl nucleic acid (CeNA) residue onto the sequence d(CGCGAATTCGCG).

Published in:

Nucleic Acids Research, 2008, v. 36, n. 5, p. 1407, doi. 10.1093/nar/gkm1132

By:

Robeyns, Koen;
Herdewijn, Piet;
Van Meervelt, Luc

Publication type:

Article

Improvement of reporter activity by IRES-mediated polycistronic reporter system.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 5, p. e28, doi. 10.1093/nar/gkm1119

By:

Bouabe, Hicham;
Fässler, Reinhard;
Heesemann, Jürgen

Publication type:

Article

Transcription regulation of the type II restriction-modification system AhdI.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 5, p. 1429, doi. 10.1093/nar/gkm1116

By:

Bogdanova, Ekaterina;
Djordjevic, Marko;
Papapanagiotou, Ioanna;
Heyduk, Tomasz;
Kneale, Geoff;
Severinov, Konstantin

Publication type:

Article

A balance between NF-Y and p53 governs the pro- and anti-apoptotic transcriptional response.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 5, p. 1415, doi. 10.1093/nar/gkm1046

By:

Benatti, Paolo;
Basile, Valentina;
Merico, Daniele;
Fantoni, Luca Isaia;
Tagliafico, Enrico;
Imbriano, Carol

Publication type:

Article

Algorithm for prediction of tumour suppressor p53 affinity for binding sites in DNA.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 5, p. 1589, doi. 10.1093/nar/gkm1040

By:

Veprintsev, Dmitry B.;
Fersht, Alan R.

Publication type:

Article

Stretching and unzipping nucleic acid hairpins using a synthetic nanopore.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 5, p. 1532, doi. 10.1093/nar/gkm1017

By:

Zhao, Q.;
Comer, J.;
Dimitrov, V.;
Yemenicioglu, S.;
Aksimentiev, A.;
Timp, G.

Publication type:

Article