Works matching IS 03051048 AND DT 2008 AND VI 36 AND IP 22

Results: 36

Editorial.

Published in:: Nucleic Acids Research, 2008, v. 36, n. 22, p. 6945, doi. 10.1093/nar/gkn997
Publication type:: Article

Thermodynamic stability and Watson–Crick base pairing in the seed duplex are major determinants of the efficiency of the siRNA-based off-target effect.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 22, p. 7100, doi. 10.1093/nar/gkn902

By:

Ui-Tei, Kumiko;
Naito, Yuki;
Nishi, Kenji;
Juni, Aya;
Saigo, Kaoru

Publication type:

Article

Small non-coding RNAs in Streptomyces coelicolor.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 22, p. 7240, doi. 10.1093/nar/gkn898

By:

Swiercz, Julia P.;
Hindra;
Bobek, Jan;
Haiser, Henry J.;
Di Berardo, Christina;
Tjaden, Brian;
Elliot, Marie A.

Publication type:

Article

Highly individual methylation patterns of alternative glucocorticoid receptor promoters suggest individualized epigenetic regulatory mechanisms.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 22, p. 7207, doi. 10.1093/nar/gkn897

By:

Turner, Jonathan D.;
Pelascini, Laetitia P. L.;
Macedo, Joana A.;
Muller, Claude P.

Publication type:

Article

Depurination within the intergenic region of Brome mosaic virus RNA3 inhibits viral replication in vitro and in vivo.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 22, p. 7230, doi. 10.1093/nar/gkn896

By:

Karran, Rajita A.;
Hudak, Katalin A.

Publication type:

Article

Novel bimodular DNA aptamers with guanosine quadruplexes inhibit phylogenetically diverse HIV-1 reverse transcriptases.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 22, p. 7124, doi. 10.1093/nar/gkn891

By:

Michalowski, Daniel;
Chitima-Matsiga, Rebecca;
Held, Daniel M.;
Burke, Donald H.

Publication type:

Article

Induction of PPM1D following DNA-damaging treatments through a conserved p53 response element coincides with a shift in the use of transcription initiation sites.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 22, p. 7168, doi. 10.1093/nar/gkn888

By:

Rossi, Matteo;
Demidov, Oleg N.;
Anderson, Carl W.;
Appella, Ettore;
Mazur, Sharlyn J.

Publication type:

Article

Synapsis and catalysis by activated Tn3 resolvase mutants.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 22, p. 7181, doi. 10.1093/nar/gkn885

By:

Olorunniji, Femi J.;
He, Jiuya;
Wenwieser, Sandra V.C.T.;
Boocock, Martin R.;
Stark, W. Marshall

Publication type:

Article

Efficient processing of TFO-directed psoralen DNA interstrand crosslinks by the UvrABC nuclease.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 22, p. 7136, doi. 10.1093/nar/gkn880

By:

Christensen, Laura A.;
Wang, Hong;
Van Houten, Bennett;
Vasquez, Karen M.

Publication type:

Article

A rugged free energy landscape separates multiple functional RNA folds throughout denaturation.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 22, p. 7088, doi. 10.1093/nar/gkn871

By:

Ditzler, Mark A.;
Rueda, David;
Mo, Jingjie;
Håkansson, Kristina;
Walter, Nils G.

Publication type:

Article

Common physical basis of macromolecule-binding sites in proteins.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 22, p. 7078, doi. 10.1093/nar/gkn868

By:

Chen, Yao Chi;
Lim, Carmay

Publication type:

Article

A diversity of uncharacterized reverse transcriptases in bacteria.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 22, p. 7219, doi. 10.1093/nar/gkn867

By:

Simon, Dawn M.;
Zimmerly, Steven

Publication type:

Article

Reciprocal regulation of glycine-rich RNA-binding proteins via an interlocked feedback loop coupling alternative splicing to nonsense-mediated decay in Arabidopsis.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 22, p. 6977, doi. 10.1093/nar/gkn847

By:

Schöning, Jan C.;
Streitner, Corinna;
Meyer, Irmtraud M.;
Gao, Yahong;
Staiger, Dorothee

Publication type:

Article

Recognition of a common rDNA target site in archaea and eukarya by analogous LAGLIDADG and His–Cys box homing endonucleases.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 22, p. 6988, doi. 10.1093/nar/gkn846

By:

Nomura, Norimichi;
Nomura, Yayoi;
Sussman, Django;
Klein, Daniel;
Stoddard, Barry L.

Publication type:

Article

Derivatization of DNAs with selenium at 6-position of guanine for function and crystal structure studies.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 22, p. 7009, doi. 10.1093/nar/gkn843

By:

Salon, Jozef;
Jiang, Jiansheng;
Sheng, Jia;
Gerlits, Oksana O.;
Huang, Zhen

Publication type:

Article

Reinitiated viral RNA-dependent RNA polymerase resumes replication at a reduced rate.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 22, p. 7059, doi. 10.1093/nar/gkn836

By:

Vilfan, Igor D.;
Candelli, Andrea;
Hage, Susanne;
Aalto, Antti P.;
Poranen, Minna M.;
Bamford, Dennis H.;
Dekker, Nynke H.

Publication type:

Article

Exploring TAR–RNA aptamer loop–loop interaction by X-ray crystallography, UV spectroscopy and surface plasmon resonance.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 22, p. 7146, doi. 10.1093/nar/gkn831

By:

Lebars, Isabelle;
Legrand, Pierre;
Aimé, Ahissan;
Pinaud, Noël;
Fribourg, Sébastien;
Di Primo, Carmelo

Publication type:

Article

Functional characterization of alternatively spliced human SECISBP2 transcript variants.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 22, p. 7192, doi. 10.1093/nar/gkn829

By:

Papp, Laura V.;
Wang, Junning;
Kennedy, Derek;
Boucher, Didier;
Zhang, Yan;
Gladyshev, Vadim N.;
Singh, Ravindra N.;
Khanna, Kum Kum

Publication type:

Article

Structural and functional characterization of the LldR from Corynebacterium glutamicum: a transcriptional repressor involved in l-lactate and sugar utilization.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 22, p. 7110, doi. 10.1093/nar/gkn827

By:

Gao, Yong-Gui;
Suzuki, Hiroaki;
Itou, Hiroshi;
Zhou, Yong;
Tanaka, Yoshikazu;
Wachi, Masaaki;
Watanabe, Nobuhisa;
Tanaka, Isao;
Yao, Min

Publication type:

Article

A novel method to generate unmarked gene deletions in the intracellular pathogen Rhodococcus equi using 5-fluorocytosine conditional lethality.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 22, p. e151, doi. 10.1093/nar/gkn811

By:

van der Geize, R.;
de Jong, W.;
Hessels, G. I.;
Grommen, A. W. F.;
Jacobs, A. A. C.;
Dijkhuizen, L.

Publication type:

Article

Bacteriophage Mu integration in yeast and mammalian genomes.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 22, p. e148, doi. 10.1093/nar/gkn801

By:

Paatero, Anja O.;
Turakainen, Hilkka;
Happonen, Lotta J.;
Olsson, Cia;
Palomäki, Tiina;
Pajunen, Maria I.;
Meng, Xiaojuan;
Otonkoski, Timo;
Tuuri, Timo;
Berry, Charles;
Malani, Nirav;
Frilander, Mikko J.;
Bushman, Frederic D.;
Savilahti, Harri

Publication type:

Article

A cytoplasmic variant of the KH-type splicing regulatory protein serves as a decay-promoting factor for phosphoglycerate kinase 2 mRNA in murine male germ cells.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 22, p. 7157

By:

Xu, Mingang;
McCarrey, John R.;
Hecht, Norman B.

Publication type:

Article

Proteome-wide identification of poly(ADP-ribose) binding proteins and poly(ADP-ribose)-associated protein complexes.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 22, p. 6959, doi. 10.1093/nar/gkn771

By:

Gagné, Jean-Philippe;
Isabelle, Maxim;
Lo, Ken Sin;
Bourassa, Sylvie;
Hendzel, Michael J.;
Dawson, Valina L.;
Dawson, Ted M.;
Poirier, Guy G.

Publication type:

Article

In vitro initial attachment of HIV-1 integrase to viral ends: control of the DNA specific interaction by the oligomerization state.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 22, p. 7043, doi. 10.1093/nar/gkn796

By:

Lesbats, P.;
Métifiot, M.;
Calmels, C.;
Baranova, S.;
Nevinsky, G.;
Andreola, M. L.;
Parissi, V.

Publication type:

Article

RecG interacts directly with SSB: implications for stalled replication fork regression.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 22, p. 7029, doi. 10.1093/nar/gkn795

By:

Buss, Jackson A.;
Kimura, Yuji;
Bianco, Piero R.

Publication type:

Article

Orientation-dependent interaction between Drosophila insulators is a property of this class of regulatory elements.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 22, p. 7019, doi. 10.1093/nar/gkn781

By:

Kyrchanova, Olga;
Chetverina, Darya;
Maksimenko, Oksana;
Kullyev, Andrey;
Georgiev, Pavel

Publication type:

Article

A NMR strategy to unambiguously distinguish nucleic acid hairpin and duplex conformations applied to a Xist RNA A-repeat.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 22, p. 7068, doi. 10.1093/nar/gkn776

By:

Duszczyk, Malgorzata M.;
Zanier, Katia;
Sattler, Michael

Publication type:

Article

Properties of pseudo-complementary DNA substituted with weakly pairing analogs of guanine or cytosine.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 22, p. 6999, doi. 10.1093/nar/gkn797

By:

Lahoud, Georges;
Timoshchuk, Victor;
Lebedev, Alexandre;
Arar, Khalil;
Hou, Ya-Ming;
Gamper, Howard

Publication type:

Article

Using Mahalanobis distance to compare genomic signatures between bacterial plasmids and chromosomes.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 22, p. e147, doi. 10.1093/nar/gkn753

By:

Suzuki, Haruo;
Sota, Masahiro;
Brown, Celeste J.;
Top, Eva M.

Publication type:

Article

A novel procedure for genotyping of single nucleotide polymorphisms in trisomy with genomic DNA and the invader assay.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 22, p. e145, doi. 10.1093/nar/gkn736

By:

Duffy, Kelly J.;
Littrell, Jack;
Locke, Adam;
Sherman, Stephanie L.;
Olivier, Michael

Publication type:

Article

Rolling circle amplification-mediated hairpin RNA (RMHR) library construction in plants.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 22, p. e149, doi. 10.1093/nar/gkn715

By:

Wang, Lei;
Luo, Yan-Zhong;
Zhang, Lan;
Jiao, Xiao-Ming;
Wang, Ming-Bo;
Fan, Yun-Liu

Publication type:

Article

Identification and recovery of minor HIV-1 variants using the heteroduplex tracking assay and biotinylated probes.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 22, p. e146, doi. 10.1093/nar/gkn713

By:

Schnell, Gretja;
Ince, William L.;
Swanstrom, Ronald

Publication type:

Article

Errors in the bisulfite conversion of DNA: modulating inappropriate- and failed-conversion frequencies.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 22, p. e150, doi. 10.1093/nar/gkn691

By:

Genereux, Diane P.;
Johnson, Winslow C.;
Burden, Alice F.;
Stöger, Reinhard;
Laird, Charles D.

Publication type:

Article

Subscriptions.

Published in:: Nucleic Acids Research, 2008, v. 36, n. 22, p. iii, doi. 10.1093/nar/gkn1033
Publication type:: Article

Nucleic Acids Research.

Published in:: Nucleic Acids Research, 2008, v. 36, n. 22, p. ii, doi. 10.1093/nar/gkn1031
Publication type:: Article

A whole-genome approach to identifying protein binding sites: promoters in Methanocaldococcus (Methanococcus) jannaschii.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 22, p. 6948

By:

Li, Enhu;
Reich, Claudia I.;
Olsen, Gary J.

Publication type:

Article