Works matching IS 03051048 AND DT 2008 AND VI 36 AND IP 12

Results: 41

The antiparallel loops in gal DNA.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 12, p. 4204, doi. 10.1093/nar/gkn389

By:

Lia, Giuseppe;
Semsey, Szabolcs;
Lewis, Dale E. A.;
Adhya, Sankar;
Bensimon, David;
Dunlap, David;
Finzi, Laura

Publication type:

Article

Kinetics and mechanism of K+- and Na+-induced folding of models of human telomeric DNA into G-quadruplex structures.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 12, p. 4191, doi. 10.1093/nar/gkn379

By:

Gray, Robert D.;
Chaires, Jonathan B.

Publication type:

Article

Sliding and jumping of single EcoRV restriction enzymes on non-cognate DNA.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 12, p. 4118, doi. 10.1093/nar/gkn376

By:

Bonnet, Isabelle;
Biebricher, Andreas;
Porté, Pierre-Louis;
Loverdo, Claude;
Bénichou, Olivier;
Voituriez, Raphaël;
Escudé, Christophe;
Wende, Wolfgang;
Pingoud, Alfred;
Desbiolles, Pierre

Publication type:

Article

Structural and functional analyses of the DMC1-M200V polymorphism found in the human population.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 12, p. 4181, doi. 10.1093/nar/gkn362

By:

Hikiba, Juri;
Hirota, Kouji;
Kagawa, Wataru;
Ikawa, Shukuko;
Kinebuchi, Takashi;
Sakane, Isao;
Takizawa, Yoshimasa;
Yokoyama, Shigeyuki;
Mandon-Pépin, Béatrice;
Nicolas, Alain;
Shibata, Takehiko;
Ohta, Kunihiro;
Kurumizaka, Hitoshi

Publication type:

Article

Associating transcription factor-binding site motifs with target GO terms and target genes.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 12, p. 4108, doi. 10.1093/nar/gkn374

By:

Bodén, Mikael;
Bailey, Timothy L.

Publication type:

Article

Promoter library designed for fine-tuned gene expression in Pichia pastoris.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 12, p. e76, doi. 10.1093/nar/gkn369

By:

Hartner, Franz S.;
Ruth, Claudia;
Langenegger, David;
Johnson, Sabrina N.;
Hyka, Petr;
Lin-Cereghino, Geoffrey P.;
Lin-Cereghino, Joan;
Kovar, Karin;
Cregg, James M.;
Glieder, Anton

Publication type:

Article

Cis-regulatory modules in the mammalian liver: composition depends on strength of Foxa2 consensus site.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 12, p. 4149, doi. 10.1093/nar/gkn366

By:

Tuteja, Geetu;
Jensen, Shane T.;
White, Peter;
Kaestner, Klaus H.

Publication type:

Article

Inhibition of 3′ modification of small RNAs in virus-infected plants require spatial and temporal co-expression of small RNAs and viral silencing-suppressor proteins.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 12, p. 4099, doi. 10.1093/nar/gkn365

By:

Lózsa, Rita;
Csorba, Tibor;
Lakatos, Lóránt;
Burgyán, József

Publication type:

Article

Cytosine ribose flexibility in DNA: a combined NMR 13C spin relaxation and molecular dynamics simulation study.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 12, p. 4211, doi. 10.1093/nar/gkn375

By:

Duchardt, Elke;
Nilsson, Lennart;
Schleucher, Jürgen

Publication type:

Article

Extracting sequence features to predict protein–DNA interactions: a comparative study.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 12, p. 4137, doi. 10.1093/nar/gkn361

By:

Zhou, Qing;
Liu, Jun S.

Publication type:

Article

Studies on Methanocaldococcus jannaschii RNase P reveal insights into the roles of RNA and protein cofactors in RNase P catalysis.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 12, p. 4172, doi. 10.1093/nar/gkn360

By:

Pulukkunat, Dileep K.;
Gopalan, Venkat

Publication type:

Article

Development of a single tube 640-plex genotyping method for detection of nucleic acid variations on microarrays.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 12, p. e75, doi. 10.1093/nar/gkn357

By:

Krjutškov, Kaarel;
Andreson, Reidar;
Mägi, Reedik;
Nikopensius, Tiit;
Khrunin, Andrey;
Mihailov, Evelin;
Tammekivi, Veronika;
Sork, Helena;
Remm, Maido;
Metspalu, Andres

Publication type:

Article

TSA downregulates Wilms tumor gene 1 (Wt1) expression at multiple levels.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 12, p. 4067, doi. 10.1093/nar/gkn356

By:

Makki, Mohammad Shahidul;
Heinzel, Thorsten;
Englert, Christoph

Publication type:

Article

Computational design of orthogonal ribosomes.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 12, p. 4038, doi. 10.1093/nar/gkn354

By:

Chubiz, Lon M.;
Rao, Christopher V.

Publication type:

Article

Eukaryotic HMGB proteins as replacements for HU in E. coli repression loop formation.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 12, p. 4009, doi. 10.1093/nar/gkn353

By:

Becker, Nicole A.;
Kahn, Jason D.;
Maher, L. James

Publication type:

Article

A comparative analysis of Dmc1 and Rad51 nucleoprotein filaments.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 12, p. 4057, doi. 10.1093/nar/gkn352

By:

Sheridan, Sean D.;
Yu, Xiong;
Roth, Robyn;
Heuser, John E.;
Sehorn, Michael G.;
Sung, Patrick;
Egelman, Edward H.;
Bishop, Douglas K.

Publication type:

Article

Structural polymorphism of intramolecular quadruplex of human telomeric DNA: effect of cations, quadruplex-binding drugs and flanking sequences.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 12, p. 4079, doi. 10.1093/nar/gkn351

By:

Gaynutdinov, Timur I.;
Neumann, Ronald D.;
Panyutin, Igor G.

Publication type:

Article

Structural change in a B-DNA helix with hydrostatic pressure.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 12, p. 4032, doi. 10.1093/nar/gkn350

By:

Wilton, David J.;
Ghosh, Mahua;
Chary, K. V. A.;
Akasaka, Kazuyuki;
Williamson, Mike P.

Publication type:

Article

Comparative genomics supports a deep evolutionary origin for the large, four-module transcriptional mediator complex.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 12, p. 3993, doi. 10.1093/nar/gkn349

By:

Bourbon, Henri-Marc

Publication type:

Article

DNA protection by histone-like protein HU from the hyperthermophilic eubacterium Thermotoga maritima.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 12, p. 3956, doi. 10.1093/nar/gkn348

By:

Mukherjee, Anirban;
Sokunbi, Abimbola O.;
Grove, Anne

Publication type:

Article

Hierarchy of nonhomologous end-joining, single-strand annealing and gene conversion at site-directed DNA double-strand breaks.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 12, p. 4088, doi. 10.1093/nar/gkn347

By:

Mansour, Wael Y.;
Schumacher, Sabine;
Rosskopf, Raphael;
Rhein, Tim;
Schmidt-Petersen, Filip;
Gatzemeier, Fruszina;
Haag, Friedrich;
Borgmann, Kerstin;
Willers, Henning;
Dahm-Daphi, Jochen

Publication type:

Article

A mechanism for DNA-PK activation requiring unique contributions from each strand of a DNA terminus and implications for microhomology-mediated nonhomologous DNA end joining.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 12, p. 4022, doi. 10.1093/nar/gkn344

By:

Pawelczak, Katherine S.;
Turchi, John J.

Publication type:

Article

Template-directed addition of nucleosides to DNA by the BfiI restriction enzyme.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 12, p. 3969, doi. 10.1093/nar/gkn343

By:

Sasnauskas, Giedrius;
Connolly, Bernard A.;
Halford, Stephen E.;
Siksnys, Virginijus

Publication type:

Article

Mechanisms and strategies for effective delivery of antisense and siRNA oligonucleotides.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 12, p. 4158, doi. 10.1093/nar/gkn342

By:

Juliano, Rudy;
Alam, Md. Rowshon;
Dixit, Vidula;
Kang, Hyumin

Publication type:

Article

Alkylation damage causes MMR-dependent chromosomal instability in vertebrate embryos.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 12, p. 4047, doi. 10.1093/nar/gkn341

By:

Feitsma, Harma;
Akay, Alper;
Cuppen, Edwin

Publication type:

Article

Differential binding of quadruplex structures of muscle-specific genes regulatory sequences by MyoD, MRF4 and myogenin.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 12, p. 3916, doi. 10.1093/nar/gkn340

By:

Yafe, Anat;
Shklover, Jeny;
Weisman-Shomer, Pnina;
Bengal, Eyal;
Fry, Michael

Publication type:

Article

The Escherichia coli RutR transcription factor binds at targets within genes as well as intergenic regions.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 12, p. 3950, doi. 10.1093/nar/gkn339

By:

Shimada, Tomohiro;
Ishihama, Akira;
Busby, Stephen J. W.;
Grainger, David C.

Publication type:

Article

Single-molecule imaging of full protein synthesis by immobilized ribosomes.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 12, p. e70, doi. 10.1093/nar/gkn338

By:

Uemura, Sotaro;
Iizuka, Ryo;
Ueno, Taro;
Shimizu, Yoshihiro;
Taguchi, Hideki;
Ueda, Takuya;
Puglisi, Joseph D.;
Funatsu, Takashi

Publication type:

Article

The modulation of topoisomerase I-mediated DNA cleavage and the induction of DNA–topoisomerase I crosslinks by crotonaldehyde-derived DNA adducts.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 12, p. 4128, doi. 10.1093/nar/gkn334

By:

Dexheimer, Thomas S.;
Kozekova, Albena;
Rizzo, Carmelo J.;
Stone, Michael P.;
Pommier, Yves

Publication type:

Article

A RecB-family nuclease motif in the Type I restriction endonuclease EcoR124I.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 12, p. 3939

By:

Šišáková, Eva;
Stanley, Louise K.;
Weiserová, Marie;
Szczelkun, Mark D.

Publication type:

Article

DBD-Hunter: a knowledge-based method for the prediction of DNA–protein interactions.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 12, p. 3978, doi. 10.1093/nar/gkn332

By:

Gao, Mu;
Skolnick, Jeffrey

Publication type:

Article

Efficient cytosolic delivery of molecular beacon conjugates and flow cytometric analysis of target RNA.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 12, p. e69, doi. 10.1093/nar/gkn331

By:

Chen, Antony K.;
Behlke, Mark A.;
Tsourkas, Andrew

Publication type:

Article

Minimally invasive determination of mRNA concentration in single living bacteria.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 12, p. e73, doi. 10.1093/nar/gkn329

By:

Guet, Călin C.;
Bruneaux, Luke;
Min, Taejin L.;
Siegal-Gaskins, Dan;
Figueroa, Israel;
Emonet, Thierry;
Cluzel, Philippe

Publication type:

Article

Development of a single-chain, quasi-dimeric zinc-finger nuclease for the selective degradation of mutated human mitochondrial DNA.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 12, p. 3926, doi. 10.1093/nar/gkn313

By:

Minczuk, Michal;
Papworth, Monika A.;
Miller, Jeffrey C.;
Murphy, Michael P.;
Klug, Aaron

Publication type:

Article

Characterization of a replicative DNA polymerase mutant with reduced fidelity and increased translesion synthesis capacity.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 12, p. 3892, doi. 10.1093/nar/gkn312

By:

Zhong, Xuejun;
Pedersen, Lars C.;
Kunkel, Thomas A.

Publication type:

Article

Mechanism of double-base lesion bypass catalyzed by a Y-family DNA polymerase.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 12, p. 3867, doi. 10.1093/nar/gkn309

By:

Brown, Jessica A.;
Newmister, Sean A.;
Fiala, Kevin A.;
Suo, Zucai

Publication type:

Article

Improved assay-dependent searching of nucleic acid sequence databases.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 12, p. e74, doi. 10.1093/nar/gkn301

By:

Gans, Jason D.;
Wolinsky, Murray

Publication type:

Article

Inversing the natural hydrogen bonding rule to selectively amplify GC-rich ADAR-edited RNAs.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 12, p. e72

By:

Suspène, Rodolphe;
Renard, Myrtille;
Henry, Michel;
Guétard, Denise;
Puyraimond-Zemmour, David;
Billecocq, Agnès;
Bouloy, Michèle;
Tangy, Frederic;
Vartanian, Jean-Pierre;
Wain-Hobson, Simon

Publication type:

Article

Transcriptional regulation of the Drosophila moira and osa genes by the DREF pathway.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 12, p. 3905, doi. 10.1093/nar/gkn291

By:

Nakamura, Kumi;
Ida, Hiroyuki;
Yamaguchi, Masamitsu

Publication type:

Article

Nuclear delivery of NFκB-assisted DNA/polymer complexes: plasmid DNA quantitation by confocal laser scanning microscopy and evidence of nuclear polyplexes by FRET imaging.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 12, p. e71, doi. 10.1093/nar/gkn287

By:

Breuzard, Gilles;
Tertil, Magdalena;
Gonçalves, Cristine;
Cheradame, Hervé;
Géguan, Philippe;
Pichon, Chantal;
Midoux, Patrick

Publication type:

Article

A motif in the C-terminal domain of ϕC31 integrase controls the directionality of recombination.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 12, p. 3879, doi. 10.1093/nar/gkn269

By:

Rowley, Paul A.;
Smith, Matthew C. A.;
Younger, Ellen;
Smith, Margaret C. M.

Publication type:

Article