Works matching IS 03051048 AND DT 2008 AND VI 36 AND IP 11

Results: 38

A single amino acid change in histone H4 enhances UV survival and DNA repair in yeast.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 11, p. 3857, doi. 10.1093/nar/gkn311

By:

Nag, Ronita;
Gong, Feng;
Fahy, Deirdre;
Smerdon, Michael J.

Publication type:

Article

Low-fidelity DNA synthesis by human DNA polymerase theta.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 11, p. 3847, doi. 10.1093/nar/gkn310

By:

Arana, Mercedes E.;
Seki, Mineaki;
Wood, Richard D.;
Rogozin, Igor B.;
Kunkel, Thomas A.

Publication type:

Article

bZIP-Type transcription factors CREB and OASIS bind and stimulate the promoter of the mammalian transcription factor GCMa/Gcm1 in trophoblast cells.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 11, p. 3834, doi. 10.1093/nar/gkn306

By:

Schubert, Steffen Wolfgang;
Abendroth, Alexandra;
Kilian, Karin;
Vogler, Tina;
Mayr, Bernhard;
Knerr, Ina;
Hashemolhosseini, Said

Publication type:

Article

Mechanistic studies on bleomycin-mediated DNA damage: multiple binding modes can result in double-stranded DNA cleavage.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 11, p. 3781, doi. 10.1093/nar/gkn302

By:

Chen, Jingyang;
Ghorai, Manas K.;
Kenney, Grace;
Stubbe, JoAnne

Publication type:

Article

Electrochemical detection of low-copy number salivary RNA based on specific signal amplification with a hairpin probe.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 11, p. e65, doi. 10.1093/nar/gkn299

By:

Wei, Fang;
Wang, Jianghua;
Liao, Wei;
Zimmermann, Bernhard G.;
Wong, David T.;
Ho, Chih-Ming

Publication type:

Article

Regulated gene insertion by steroid-induced ΦC31 integrase.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 11, p. e67, doi. 10.1093/nar/gkn298

By:

Sharma, Nynne;
Moldt, Brian;
Dalsgaard, Trine;
Jensen, Thomas G.;
Mikkelsen, Jacob Giehm

Publication type:

Article

Predicting failure rate of PCR in large genomes.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 11, p. e66, doi. 10.1093/nar/gkn290

By:

Andreson, Reidar;
Möls, Tõnu;
Remm, Maido

Publication type:

Article

SCUMBLE: a method for systematic and accurate detection of codon usage bias by maximum likelihood estimation.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 11, p. 3819, doi. 10.1093/nar/gkn288

By:

Kloster, Morten;
Tang, Chao

Publication type:

Article

The simple and rapid detection of specific PCR products from bacterial genomes using Zn finger proteins.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 11, p. e68, doi. 10.1093/nar/gkn274

By:

Osawa, Yuko;
Ikebukuro, Kazunori;
Motoki, Hiroaki;
Matsuo, Takafumi;
Horiuchi, Michio;
Sode, Koji

Publication type:

Article

Recruitment of RNA polymerase III in vivo.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 11, p. 3757, doi. 10.1093/nar/gkn272

By:

Kenneth, Niall S.;
Marshall, Lynne;
White, Robert J.

Publication type:

Article

In vivo identification of novel STAT5 target genes.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 11, p. 3802, doi. 10.1093/nar/gkn271

By:

Basham, Beth;
Sathe, Manjiri;
Grein, Jeffrey;
McClanahan, Terrill;
D’Andrea, Annalisa;
Lees, Emma;
Rascle, Anne

Publication type:

Article

TRE-dependent transcription activation by JDP2–CHOP10 association.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 11, p. 3608, doi. 10.1093/nar/gkn268

By:

Weidenfeld-Baranboim, Keren;
Bitton-Worms, Keren;
Aronheim, Ami

Publication type:

Article

High-throughput single-nucleotide structural mapping by capillary automated footprinting analysis.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 11, p. e63, doi. 10.1093/nar/gkn267

By:

Mitra, Somdeb;
Shcherbakova, Inna V.;
Altman, Russ B.;
Brenowitz, Michael;
Laederach, Alain

Publication type:

Article

Fundamental differences in the equilibrium considerations for siRNA and antisense oligodeoxynucleotide design.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 11, p. 3738

By:

Lu, Zhi John;
Mathews, David H.

Publication type:

Article

DNA physical properties determine nucleosome occupancy from yeast to fly.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 11, p. 3746, doi. 10.1093/nar/gkn262

By:

Miele, Vincent;
Vaillant, Cédric;
d'Aubenton-Carafa, Yves;
Thermes, Claude;
Grange, Thierry

Publication type:

Article

LINE-1 methylation status of endogenous DNA double-strand breaks.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 11, p. 3667, doi. 10.1093/nar/gkn261

By:

Pornthanakasem, Wichai;
Kongruttanachok, Narisorn;
Phuangphairoj, Chutipa;
Suyarnsestakorn, Chotika;
Sanghangthum, Taweap;
Oonsiri, Sornjarod;
Ponyeam, Wanpen;
Thanasupawat, Thatchawan;
Matangkasombut, Oranart;
Mutirangura, Apiwat

Publication type:

Article

DNA conformations and their sequence preferences.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 11, p. 3690, doi. 10.1093/nar/gkn260

By:

Svozil, Daniel;
Kalina, Jan;
Omelka, Marek;
Schneider, Bohdan

Publication type:

Article

Mechanism of high-mobility group protein B enhancement of progesterone receptor sequence-specific DNA binding.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 11, p. 3655, doi. 10.1093/nar/gkn249

By:

Roemer, Sarah C.;
Adelman, James;
Churchill, Mair E. A.;
Edwards, Dean P.

Publication type:

Article

Comprehensive detection of human terminal oligo-pyrimidine (TOP) genes and analysis of their characteristics.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 11, p. 3707, doi. 10.1093/nar/gkn248

By:

Yamashita, Riu;
Suzuki, Yutaka;
Takeuchi, Nono;
Wakaguri, Hiroyuki;
Ueda, Takuya;
Sugano, Sumio;
Nakai, Kenta

Publication type:

Article

The bHLH/Per-Arnt-Sim transcription factor SIM2 regulates muscle transcript myomesin2 via a novel, non-canonical E-box sequence.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 11, p. 3716, doi. 10.1093/nar/gkn247

By:

Woods, Susan;
Farrall, Alexandra;
Procko, Carl;
Whitelaw, Murray L.

Publication type:

Article

DNA binding of dinuclear iron(II) metallosupramolecular cylinders. DNA unwinding and sequence preference.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 11, p. 3630, doi. 10.1093/nar/gkn244

By:

Malina, Jaroslav;
Hannon, Michael J.;
Brabec, Viktor

Publication type:

Article

Cooperation between EZH2, NSPc1-mediated histone H2A ubiquitination and Dnmt1 in HOX gene silencing.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 11, p. 3590, doi. 10.1093/nar/gkn243

By:

Wu, Xudong;
Gong, Yanhua;
Yue, Jiping;
Qiang, Boqin;
Yuan, Jiangang;
Peng, Xiaozhong

Publication type:

Article

Structural and functional insights into human Tudor-SN, a key component linking RNA interference and editing.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 11, p. 3579

By:

Li, Chia-Lung;
Yang, Wei-Zen;
Chen, Yi-Ping;
Yuan, Hanna S.

Publication type:

Article

Beyond tissueInfo: functional prediction using tissue expression profile similarity searches.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 11, p. 3728, doi. 10.1093/nar/gkn233

By:

Aguilar, Daniel;
Skrabanek, Lucy;
Gross, Steven S.;
Oliva, Baldo;
Campagne, Fabien

Publication type:

Article

Characterization of genome-wide p53-binding sites upon stress response.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 11, p. 3639, doi. 10.1093/nar/gkn232

By:

Smeenk, Leonie;
van Heeringen, Simon J.;
Koeppel, Max;
van Driel, Marc A.;
Bartels, Stefanie J. J.;
Akkers, Robert C.;
Denissov, Sergei;
Stunnenberg, Hendrik G.;
Lohrum, Marion

Publication type:

Article

Sequence-specific DNA cleavage mediated by bipyridine polyamide conjugates.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 11, p. 3531, doi. 10.1093/nar/gkn231

By:

Simon, Philippe;
Cannata, Fabio;
Perrouault, Loïc;
Halby, Ludovic;
Concordet, Jean-Paul;
Boutorine, Alexandre;
Ryabinin, Vladimir;
Sinyakov, Alexandre;
Giovannangeli, Carine

Publication type:

Article

Ribosomal RNAs are tolerant toward genetic insertions: evolutionary origin of the expansion segments.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 11, p. 3539, doi. 10.1093/nar/gkn224

By:

Yokoyama, Takeshi;
Suzuki, Tsutomu

Publication type:

Article

Snap-to-it probes: chelate-constrained nucleobase oligomers with enhanced binding specificity.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 11, p. 3522, doi. 10.1093/nar/gkn219

By:

Morgan, Joel R.;
Lyon, Robert P.;
Maeda, Dean Y.;
Zebala, John A.

Publication type:

Article

Molecular basis for the lack of enantioselectivity of human 3-phosphoglycerate kinase.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 11, p. 3620, doi. 10.1093/nar/gkn212

By:

Gondeau, C.;
Chaloin, L.;
Lallemand, P.;
Roy, B.;
Périgaud, C.;
Barman, T.;
Varga, A.;
Vas, M.;
Lionne, C.;
Arold, S. T.

Publication type:

Article

A simple algorithm for quantifying DNA methylation levels on multiple independent CpG sites in bisulfite genomic sequencing electropherograms.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 11, p. e64, doi. 10.1093/nar/gkn210

By:

Leakey, Tatiana I.;
Zielinski, Jerzy;
Siegfried, Rachel N.;
Siegel, Eric R.;
Fan, Chun-Yang;
Cooney, Craig A.

Publication type:

Article

Selection of a novel class of RNA–RNA interaction motifs based on the ligase ribozyme with defined modular architecture.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 11, p. 3600, doi. 10.1093/nar/gkn206

By:

Ohuchi, Shoji P.;
Ikawa, Yoshiya;
Nakamura, Yoshikazu

Publication type:

Article

3D visualization software to analyze topological outcomes of topoisomerase reactions.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 11, p. 3515, doi. 10.1093/nar/gkn192

By:

Darcy, I. K.;
Scharein, R. G.;
Stasiak, A.

Publication type:

Article

Discovery of novel tumor suppressor p53 response elements using information theory.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 11, p. 3828, doi. 10.1093/nar/gkn189

By:

Lyakhov, Ilya G.;
Krishnamachari, Annangarachari;
Schneider, Thomas D.

Publication type:

Article

Structural and evolutionary classification of Type II restriction enzymes based on theoretical and experimental analyses.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 11, p. 3552, doi. 10.1093/nar/gkn175

By:

Orlowski, Jerzy;
Bujnicki, Janusz M.

Publication type:

Article

Spatial effects on the speed and reliability of protein–DNA search.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 11, p. 3570, doi. 10.1093/nar/gkn173

By:

Wunderlich, Zeba;
Mirny, Leonid A.

Publication type:

Article

Streptococcus pyogenes pSM19035 requires dynamic assembly of ATP-bound ParA and ParB on parS DNA during plasmid segregation.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 11, p. 3676, doi. 10.1093/nar/gkn170

By:

Pratto, Florencia;
Cicek, Aslan;
Weihofen, Wilhelm A.;
Lurz, Rudi;
Saenger, Wolfram;
Alonso, Juan C.

Publication type:

Article

Molecular basis for group-specific activation of the virulence regulator PlcR by PapR heptapeptides.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 11, p. 3791, doi. 10.1093/nar/gkn149

By:

Bouillaut, L.;
Perchat, S.;
Arold, S.;
Zorrilla, S.;
Slamti, L.;
Henry, C.;
Gohar, M.;
Declerck, N.;
Lereclus, D.

Publication type:

Article

Structural polymorphism within a regulatory element of the human KRAS promoter: formation of G4-DNA recognized by nuclear proteins.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 11, p. 3765, doi. 10.1093/nar/gkn120

By:

Cogoi, Susanna;
Paramasivam, Manikandan;
Spolaore, Barbara;
Xodo, Luigi E.

Publication type:

Article